npm3 (npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732)


Basic Information

Item Value
gene id npm3
gene name npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6101631 ~ 6103986 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255892.1
ATGACGTCTTGATTCCCGCGACGGTTTTCGCGTTCTCGTCACATGTGTTTTGAAAACGAACGGGACTGTGGATGTTATAGCCTCGATTGAAGGGATTTTAGTAACGTTTGAGCAACTATGTCTTTTGTGGAGGACGAAGTGTCAGACAGTGGAGTGGAGTCCCGCTCGCGGTTGGAAAGCTATGTGTTCAGTTGTGAGCTGTCTTCCGAGGTTCCGTTTTACACATTTCAAGCAGATGAAGATGACGATGTGGAACATTTTCTCGAGCTTAGAACGATTTGTCTGGGTGACGGTGCCAAAGAGGAGAATAATGTTGTGGAAGTGACCGCTATGAATCACCAAGGAAAGAAAATATCAGTGCCCCTAGCTAATCTCAACATCTCCTGCCTGCCTATGGTAAGCCTCGGGGAGTTTGAGTTGATGGCTCCCGTCACGCTACGACTGAAGTCCGGCACTGGACCAGTGACCGTCAGTGGATTACATTTAGTTGCCACAGAGAATGAAGAGTCTGAGTTATCGGACGAAGACGACGACGAAGACGATGACAGTGAGGAGGAAATGCCCTCAGTCAAACCGGCCAAGAAAAAGCTGAAAGCCTAGAGATGTTCACGCCAGACCTTTACACGTTTTATACAGTATTAGACTTAATGTTCTACCACGAGACGTGACGGAGAGCGGCGTAGGATTTATCGGAGTTTTGTAATTGCAAGTGTTAAATGGAAAGGTTAGAGCCTCCATACAACCAGCTCCATGAACATTCATGTTgataatgttttaatggttaatACTGTTACTTATGTGAATGTAAGTAACTGCCAACACCAAACTTCAGATTCAGTTCTAGTTCAGGGTCTGAGCGTTCACTCCTGCTGAGCCCTGAAGTGAGGTTTGATTCCAGATCCCTGTAACCTACTGTTAAATCATGACACTGTCACAGTGGCAGCCTGTCACTCTTCTGCCTTTAGGGAATACACCAGCATTCTTCTCTACAGATGTTCCTCTCacgctgttttgttgtttgaaatttttgtccttttttaatttttttgcaatcaGGGTTTTTATATCCAAGTCCCTTTTTTGAAGGGCTGATCGAGTGCAGCTTTGCATGGAGCATTTTATGTTGAGATCAGTCTGGAAGGACTTGCCATGGTTGccgtttttgtatttttacagatttatttacagattctgtaaataaaatgtggtGTTTTAGTAGAA

Function

symbol description
npm3 Predicted to enable GTP binding activity. Predicted to be involved in cilium assembly. Predicted to be located in nucleus. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in several structures, including alar plate midbrain region; midbrain; pectoral fin bud; pectoral fin musculature; and segmental plate. Orthologous to human NPM3 (nucleophosmin/nucleoplasmin 3).

NR:

description
Nucleoplasmin-like protein NO29

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K11278 NPM3; nucleophosmin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255892.1 True 1221 mRNA 0.44 5 6101631 6103986

Neighbor

gene id symbol gene type direction distance location
oga mgea5,LOC107666422,LOC107585241,LOC107667060 coding upstream 438 6088952 ~ 6101193 (+)
pprc1 pprc1,LOC107666421,LOC107747555,LOC107569410,LOC107667059,LOC107733763,LOC107585240 coding upstream 14130 6078217 ~ 6087501 (+)
LOC122357047 enpep,LOC107747565,LOC107666571,LOC107585235,LOC107667073,LOC107733706 coding upstream 154729 5936401 ~ 5946902 (+)
lrit3b lrit3b,LOC107556923,LOC107666384 coding upstream 166047 5930197 ~ 5935584 (+)
nsd2 LOC107747575,LOC107666517,LOC107556918,LOC107733764 coding upstream 293755 5795240 ~ 5807876 (+)
arl3a arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158 coding downstream 140 6104126 ~ 6107776 (+)
zmp:0000000662 zmp:0000000662,LOC107666523,LOC107747548,LOC107733769,LOC107667074,LOC107585245,LOC108421699,LOC108263473,LOC107569423 coding downstream 48757 6152743 ~ 6159313 (+)
ube2d3 ube2d3,ube2d2,UBE2D2,ube2d1,LOC107585246,LOC108263550,LOC106611705,LOC105029919,LOC105015883 coding downstream 56392 6160378 ~ 6165669 (+)
manba manba,LOC107747546,LOC107733670 coding downstream 62516 6166502 ~ 6173714 (+)
slc39a8 slc39a8,LOC107666352,LOC107747545,LOC107733712,LOC107667057,LOC107585247,LOC107587916 coding downstream 70328 6174314 ~ 6179659 (+)
G91250 gabrb1,LOC106937613 non-coding upstream 99569 5998442 ~ 6002062 (+)
G91172 NA non-coding upstream 145033 5954891 ~ 5956598 (+)
G91180 NA non-coding upstream 173498 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 174883 5926358 ~ 5926748 (+)
G91178 NA non-coding upstream 175306 5924540 ~ 5926325 (+)
G91324 NA non-coding downstream 266224 6370210 ~ 6370528 (+)
G91343 NA non-coding downstream 348758 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 589676 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 619294 6723280 ~ 6755554 (+)
G91529 NA non-coding downstream 711024 6815010 ~ 6861516 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other upstream 114652 5982518 ~ 5986979 (+)
lamtor3 lamtor3 other upstream 149114 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 830384 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 903227 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 1103640 4992153 ~ 4997991 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 150617 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 989158 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1667574 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1732194 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 1754712 7858698 ~ 7886690 (+)

Expression


Co-expression Network