agpat4 (agpat4,LOC107739871,LOC107553196,LOC107089284)


Basic Information

Item Value
gene id agpat4
gene name agpat4,LOC107739871,LOC107553196,LOC107089284
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13686039 ~ 13692349 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255897.1
AACCCTTCTCGTCCAGTAGAGGGCGCACTCGCCTTGATAATTGGCGTCGTACAGCCCACGTTTGAGGTGATGTCTTACGGTTGCCAGCGTGTTTGGCAATTACCTTCAACTGCCGGTCGAAGTGAGCAGTGGGAAGCAACCTGTGTAGGGACACTGAGGCAGCGTTGGCTCGAGACAGAGGAAATGACATAATGACCCTCTGAAGTTCCTGCCTACGTTCCAGCGCTCTTCGAGCAGCGTCTTATGCCGGGGTGTGGTCTCATATTCCGCTCACCAGCGCTGGAATCTCTTCTGCCCAACTTAAACATCCTCAAGACTCACATCTCTCGCGCGCTCTCCAGTTAGCTCCATGCGATGAGACGGATCCTCTGCTACTAACCGcgcaaggggaaaaaaagaGGATATAGCGGAGACTGGGGACGTCAAGACTGCATGATAAGGATGGGAATTGTTCAAGTGCTAAAAACTCAGTTGCTGTGCCATCTCATTATCTGTTACGTGTTCCTAGTCAGTGGATTCATTATCAACCTGCTGCAGCTCTGTACTCTACCACTGTGGCCCTTTAACAAGCAGCTCGCACGCAAGATCAACTGCAGATTGGGTTATTCCATTTCTAGCCaACTGGTGGCATTGTTGGAGTGGTGGTCTGGGACAGAATGCACACTTTACACAGATCCAGAAAGCTATAAACTTTATGGCAAAGAGAATGCCATTGTTGTCCTTAATCATAATTTTGAGATCGATTTCATGACAGGCTGGACCTTCTGTGAGAGATTTGGCGTTTTAGGAagCTCAAAGGTGTTGGCAAAGGAACTTTCCTTTGTTCCTGTGATCGGCTGGATGTGGTACTTCCTAGAGATCGTCTTCTGCAAGAGGAAATGGGAAGAGGATCGCAAGACAGTAGTGCAAAGTCTGCACAACCTTCGGGATTACCCAGAAAACTTTTGGTTCCTGTTGCACTGTGAGGGCACACGCTTCACAGAAAAGAAGCACAAGATTAGTATGGAGGTGGCAGAGAAGAAAGGTCTCCCCAAACTCAAGTACCACCTTCTACCTCGGACCAAGGGCTTTTGTGTCACGGTCCAGAACCTCAGAGGAAAAGTTACTGCTGTGTACGATTCTACACTTAATTTCAGAAACAACGAAATGCCAACTTTACTAGGGGTACTCAACGGGAAAAAGTACCATGCTGATTTATATGTGAGGCGAATTCCTCTGGACACGATCCCAGAGGACGAGTCTGAATGTGCCGTCTGGCTTCACAAACTCTACCAGGAAAAGTAAGATGAATTCCAAGAGCATTATAGACAGACAGGGCGTTTTCCGGGTCCCATTACAAGCCCTCCGCGTCGACCTTGGTCCCTGCTGAACTGGCTCTTCTGGGTTTGTTTGCTGGTCTACCCTCTCTGCATGTTACTTCTGCAGTTGCTGCTATCAGGATCCACCTTCACTGTCGTCTGTACATCGCTCTTCTGTCTAGCAGtgtcagTTGGTATCCGCTGGATGATCGGACAGACTGAAATTGACAAGGGTTCCAACTACGAAATAAAGAGATGCAAATGA

Function

symbol description
agpat4 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and mitochondrial outer membrane. Orthologous to human AGPAT4 (1-acylglycerol-3-phosphate O-acyltransferase 4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13523 AGPAT3_4; lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255897.1 True 1563 mRNA 0.48 10 13686039 13692349

Neighbor

gene id symbol gene type direction distance location
gpr75 gpr75,LOC107602942,LOC107654975,LOC107683917,LOC107705414,LOC107553188,LOC107739897 coding upstream 7407 13675767 ~ 13678632 (+)
psme4a psme4a,LOC107602941,LOC107654976,LOC107679520,LOC107739869 coding upstream 10991 13650908 ~ 13675048 (+)
thbs2a thbs2a,thbs2,LOC107705413,LOC107654977,LOC107739867 coding upstream 40458 13626598 ~ 13645581 (+)
wdr27 wdr27,LOC107739896,LOC107585515,LOC107683903 coding upstream 68766 13581226 ~ 13617273 (+)
mkks mkks,LOC107683876 coding upstream 122714 13559093 ~ 13563325 (+)
kcnk1b kcnk1b,kcnk1,LOC107705375,LOC107654970,LOC107680317,LOC107739872,LOC107553189,LOC108415485 coding downstream 29069 13721418 ~ 13727024 (+)
LOC122356827 LOC107736840,LOC107664175,LOC107568695,LOC107747274 coding downstream 106562 13798911 ~ 13801239 (+)
LOC122356401 agpat4,LOC107739871,LOC107553196 coding downstream 160238 13852587 ~ 13858805 (+)
mfsd2aa mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 coding downstream 225849 13918198 ~ 13929237 (+)
si:ch211-67f13.7 LOC107602918 coding downstream 238274 13930623 ~ 13936869 (+)
G93512 NA non-coding upstream 338001 13346861 ~ 13348038 (+)
LOC122357146 NA non-coding upstream 469282 13216658 ~ 13216757 (+)
G93485 sptlc3,LOC107705357,LOC107662809,LOC107654988,LOC107600566 non-coding upstream 494244 13187585 ~ 13191795 (+)
G93474 NA non-coding upstream 521726 13164037 ~ 13164313 (+)
G93306 NA non-coding upstream 1083498 12602191 ~ 12602541 (+)
G93643 NA non-coding downstream 68703 13761052 ~ 13930287 (+)
G93649 NA non-coding downstream 169702 13862051 ~ 13862660 (+)
G93659 LOC107654964,LOC107680818,LOC107602919,LOC107705424,LOC107553200,LOC107739876 non-coding downstream 252981 13945330 ~ 13950605 (+)
G93592 NA non-coding downstream 339033 14031382 ~ 14161320 (+)
G93685 LOC107553176,LOC107654957,LOC107705429,LOC107602958 non-coding downstream 398176 14090525 ~ 14091232 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 527599 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 1097041 12586886 ~ 12588998 (+)
G93296 rrbp1 other upstream 1110827 12571631 ~ 12575212 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other upstream 1150968 12502385 ~ 12535071 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other upstream 1249396 12431919 ~ 12436643 (+)
G93613 NA other downstream 47258 13739607 ~ 13909603 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other downstream 56786 13749135 ~ 13760734 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other downstream 492966 14185315 ~ 14188993 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 661766 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 1414109 15106458 ~ 15226722 (+)

Expression


Co-expression Network