sirt1 (sirt1,LOC107565065,LOC106604510)


Basic Information

Item Value
gene id sirt1
gene name sirt1,LOC107565065,LOC106604510
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20607257 ~ 20616412 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255900.1
CCCGCGCTCCTCCTCCGTTCGTTCACTCTCTGGCGAAGATGGCGGACGGCGAAAATAAACGGGCCGAAGCCGCCGACGCCGCCGAGCCGCTCCCGAAGAGACCGAGACGCGCGGAGCCGCGCGGGGATCCGGAGCACGACGAGGCCGGCGGGACGGAGCCGGTGGAGGAGGaaccggcggcggcggcggacGAGTCCTGTCATCAGGCCTcgctgaacaacaacaacaacaacaacctcaccgaaccagaaccagaacccGAGCCCGAGCTCCCCGACCTGACTGAAGAAGGCGTCCACGCCAACGGTTTCACGTCTCCTGATCTTCTTCACGACGATGACGACTGCTCGTCTCACGCCAGCTCCAGTGACTGGACGCCTCAGCCGCAGATCGGCTCGTATCGGTTCATCCAGCAGCACATCATGAGAGGAACCGACCCCAGGGCCATCCTGAAAGACCTGCTGCCCGAGACGGTGCTCCCTCCGGACCTGGACGACATGACGCTGTGGCAGATCATCATCAACATCTCGGAGCCGCCCAAGAGGAAGAAGCGCAAGGACATCAACACCTTAGAGGACGTGGTGCGGCTCCTGAGCGAGAGGAAGAAGATCCTGGTGCTCACGGGAGCTGGGGTGTCCGTCTCCTGCGGGATCCCAGACTTTCGGTCTAGAGACGGGATATACGCCCGGCTCGCCGTGGACTTTCCCGACCTCCCTGACCCTCAAGCCATGTTCGACATAGACTACTTCAGAAGAGACCCGAGGCCTTTTTTCAAGTTCGCCAAGGAAATCTACCCGGGCCAGTTCCAGCCGTCTCCCTGTCACAGGTTCATCTCGATGCTGGATAAGAAGGGGAGGCTACTGAGGAACTACACTCAGAATATCGACACGCTGGAGCAGGCGGCTGGAATCCAGAAGATCATTCAGTGCCACGGTTCCTTCGCGACTGCCTCCTGCCTCGTCTGCAAGCATAAGGTCGACTGCGAAGCCGTGAGGGAGGACATATTCAACCAGGTCGTCCCTCACTGTCCGAGGTGTCCGTCAGACGTCCCGTACGCCATCATGAAACCAGACATCGTGTTCTTCGGCGAGAACCTTCCAGAGTTTTTCCACAGAGCCATGAAGCAGGACAAAGACGAGGTGGATCTTCTCATCGTCATCGGCTCCTCGCTGAAAGTTCGGCCGGTGGCTCTCATACCCAGCTCTATACCTCATGACGTGCCTCAAGTTCTGATTAACCGCGAGCCGCTGCCGCACCTGAACTTCGACGTGGAGCTGCTCGGAGACTGTGACGTGATCGTGAACGAACTCTGCCATCGTCTGGCTGGAGACTTCGAGCAGCTGTGCTTCAGCTCGTCCCGTCTCAGCGAGATCACGGAGAAGCCGTCCGCAGACGCCCAGGGGCCCGTCGCAGAGGACGTCCCGACCGCCGAATTTCAGAACTCGCCGGCCCCCGAGAACGAGGAGCCGCAAACGGCGTCTTCTCCGGCACCGACCGAAACCGGCGCGGACCGGTTAGAGCCCGACCCTAAAGAGTCGGAGAGGACGGCGGCAGACGCTCTGGACGCTGCTGAAGACCTGAAGGAGGAAGAACCGGCAGAGCGGCAGCTCGGAGAAGTACGGAGACGGTGCTGGAGGAGCCGAGTCTGTCAGAGTCCAATCAGTAAGCGACTCGCAGCCTCTCAGTACTTGTTTCAAGCGCCGAACCGCTACGTCTTCCACGGCGCCGAGGTGTACTCGAGCTCGGAGGACGAGTCGTCCAGCTCCTGCGGCAGCGACAGCGACAGCGCAGACGCCTTGGAGCGAGACGACAGCGAGGCGGAGGAGGACGGAAACACAGAGGCCGTACGGGACAGTGAACACAAACGCCTTCGGACGGACACAGACCTACAGGCCACTCAATAACTCACTAGCCGCGCTCAAgtctcttttatatatttttgtattcccCCGTTACGTCTCCTAATGCATGCGACCTCCTCCTTTCGTTCGGCTCGCCAACCTTTCTTTCCTTTCACCGCCggcctttttgtatttttgcatagCGTACGTTTAACTCCGGGGAATGTTTCCGCCTGAGAATCGACCTCGACGCGTGAtcgggggggaaaaaaaagaaaagggaatgATTTTCAAACCAAAGATCACTTTCTCCGTATCggcttcttgtttttcttcacaaGTTCCTTGTTGGATCCGCTCAGTGTTTCCAGCATGTGCACCAAACTGTGGCATTTTCAGACATTTGGCAGCTACGGTCGAAGTCTTTTATACCCAGTAAAGTTTGATAGCCATCGAACTGATGTTTTCCACTTGTTTTAAACCTACAGAAAGACATTGTTTACATGCATTCGCGTGCATTCCTGTCCTCGAGCACTTAGTAAGTTCTGAATCAGGTTTGATGTCTGTTCCTGCTCTCGTCGACGGCTTTACGACACTGTCCGGTCACGATTCGTGCTACCCTCGTGCACTtgatgcgttttttttttttttttttttggttgtttattGTGCATTTCATTTCCTCGATGTGCAAAGATAGGAATGTCCACGTCAGGTTTTTGTGTTTACGCAGGAAAAAAAAGCGAAAGagtaaattaatacttttgtcACCAAATACTTGACAAATGTAGCATTTCTGACTCTCTTCACTCGTCCTTGAGCTAAACGCTGTACATAATGCATGCACGTTTTAATGAAGAATGGTAGAGACGTATTTTGCCTGGTAATAAAACCTTCGGGAGTTTGCAGAACGAACAATTGAAGCGGTGTTTAAGTAGAAGCTGCGTTTTTAAACGATCTCctaaagttgcatttttaaaaatacatgtactGCGTTCTGCGTTTACGGCgtgttttaataattgcatAAGTTTATGTAGTTTATTAAAGCGGATTTCGGCTATAGTTTTAAGTTAAAGGAGGATAAGAGTCTTTAAAAGAGCGTCTTGATGAACTGCAGGCAACCAGCAAACATTTAGtgttattactaaataaataatccttGATAAAATccttgattaaataaatgactttgtaGCCTTA

Function

symbol description
sirt1 Predicted to enable several functions, including NAD+ binding activity; NAD-dependent histone deacetylase activity; and p53 binding activity. Acts upstream of or within cell migration involved in sprouting angiogenesis; positive regulation of angiogenesis; and regulation of gliogenesis. Predicted to be active in nuclear inner membrane; nucleoplasm; and rDNA heterochromatin. Is expressed in female organism; liver; male organism; and retina. Human ortholog(s) of this gene implicated in Huntington's disease and prostate cancer. Orthologous to human SIRT1 (sirtuin 1).

NR:

description
PREDICTED: NAD-dependent protein deacetylase sirtuin-1

GO:

id name namespace
GO:0002042 cell migration involved in sprouting angiogenesis biological_process
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11411 SIRT1, SIR2L1; NAD+-dependent protein deacetylase sirtuin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255900.1 True 3044 mRNA 0.53 9 20607257 20616412

Neighbor

gene id symbol gene type direction distance location
cacul1 cacul1,LOC107689372,LOC107562395 coding downstream 751 20598724 ~ 20606506 (-)
mypn LOC107689354,LOC107562382,LOC107750149,LOC107565072 coding downstream 11268 20572320 ~ 20595989 (-)
LOC122356970 gpatch11,LOC107689758,LOC107562390,LOC107708600 coding downstream 60265 20542775 ~ 20546992 (-)
eif2ak2 NA coding downstream 64622 20521647 ~ 20542635 (-)
nid1a nid1,LOC107691203,LOC107750138,LOC107689759,LOC107728305,LOC107575665 coding downstream 104609 20347147 ~ 20502648 (-)
herc4 LOC107689351,LOC107750134,LOC107689752,LOC107728328 coding upstream 8565 20624977 ~ 20645338 (-)
ccnj ccnj,LOC107689370,LOC107565073,LOC107728310,LOC107750147,LOC107689765,LOC107750154 coding upstream 29282 20645694 ~ 20651555 (-)
blnk LOC107750133,LOC107728331,LOC107689749,LOC107689365 coding upstream 45790 20662202 ~ 20686920 (-)
vent NA coding upstream 328172 20944584 ~ 20946525 (-)
vox vox,LOC107750144,LOC107689360,LOC107580632 coding upstream 331575 20947987 ~ 20949698 (-)
G95524 NA non-coding downstream 87164 20518600 ~ 20520093 (-)
G95519 NA non-coding downstream 91946 20514773 ~ 20515311 (-)
G95506 NA non-coding downstream 369030 20236678 ~ 20238227 (-)
LOC122356209 NA non-coding downstream 466299 20108191 ~ 20140958 (-)
G95469 NA non-coding downstream 531320 20075371 ~ 20075937 (-)
G95537 NA non-coding upstream 3635 20620047 ~ 20620719 (-)
G95535 NA non-coding upstream 4850 20621262 ~ 20678269 (-)
G95549 NA non-coding upstream 212366 20828778 ~ 20829053 (-)
G95623 NA non-coding upstream 230885 20847297 ~ 20926743 (-)
G95635 NA non-coding upstream 359867 20976279 ~ 20976497 (-)
G95526 NA other downstream 35695 20570038 ~ 20571562 (-)
G95511 NA other downstream 110393 20493642 ~ 20496864 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other downstream 115181 20488785 ~ 20492076 (-)
G95520 NA other downstream 120553 20479925 ~ 20486704 (-)
LOC122356211 gng4 other downstream 331871 20264726 ~ 20275386 (-)
G95646 adgra1,LOC107750141,LOC107567015,LOC107663568,LOC106903219,LOC107720869 other upstream 391060 21007472 ~ 21180217 (-)
LOC122357128 NA other upstream 1520976 22137388 ~ 22143970 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other upstream 1535330 22151742 ~ 22156859 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other upstream 1615037 22231449 ~ 22250313 (-)
G95932 NA other upstream 1619692 22236104 ~ 22238570 (-)

Expression


Co-expression Network