LOC122356831 (erlec1,LOC107654972,LOC107679899)


Basic Information

Item Value
gene id LOC122356831
gene name erlec1,LOC107654972,LOC107679899
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13846841 ~ 13852454 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255902.1
ATGTCATTTCCTCTGTCTCGAGCCAACGCTGCCTCAGTGTCCCTACACAGGTTGCTTCCCACTGCTCACTTCGACCGGCAGTTGAAGCTCTTTCTCTCTAATGTCCCGATAGCGCTTTTGGAGGCTCATCAGGGCGATGCGGTGTTTTGGCGTTGGTTTTTGTTGCTGATTTTGGTCGGAGTGTCTGCAAATCGTGCAGGATCTCCTGTGTTTACAGATGAAATCCCCTTCAAAATCAAATGGCCCGGGGCAGACTTCACCCTGTCAACGTCAGGAGGCCTGTACAAAGAAGATGACTATGTTATCATGACAactacagaaaaagaaaagtacaaATGTTTATTGCCGTCTTTGTCTGGCAACCAGGAGGATGATGTGAAGGAGTATGATGGGCCGAGTCCAGCTGTGCTGCTGGAGCCGTTGTTCAAACAGAGCAGCTGCTCCTACAGAATCGAATCATACTGGACATATGAAGTGTGCCACGGGAAGCATGTACGGCAGTACCATGAGGACAAAGAGACGGGGCAGAAGATCAACATTCAGGAATACTTTCTGGGTACcatgaaaaaagagagtgcagAATCAGAAACGGAAAAATCCAGTGACTCTGAATCAGAAAGATCAAACGTCAACACACAGGTGCCAACTAAGAATATAGAGGGTCAGCTGACACCATACTATCCATTAGAAATGGCACATGGGACTGAATGCTCTCTGAGACAGAATGAACCTCGCTCTACCACGGTGCTGTACGTCTGCCACCCAGAGGCAAAACATGAGATCCTCACGATCGCTGAGGTCATCACCTGTCAGTATGAAGTAGTGGTGCTCACACCCCTCATCTGTCCTCACCCGAAATACAGGTTCAAGTCGTCCCCAGTGAATGACATCTTTTGCCAGGCTCTGGGTGGCTCCCCTCTTAGACCTCAGAGTCTGTCCCAGCTGGATCGTGAGCAGGAAGAGCTGCTCAAACCACCGTTCAGCTCAAGCACCGAAAGAGATCAGAGAGGATCCAGGGAGGATTCATCTCCAGTGAAAGAAGAGGCGTATACTTCTACCCATAAGCCCCCTGACAGTGGGTGGCAAGCCCAGGTCACAGTTGGCACTACCCATATCTCTCGTTTGACTGATGAGCAGCTGATCAAGGAGTTTCTGAGTGGCTCATACTGTCTGCATGGGGGTGTTGGATGGTGGAAGTATGAATTCTGTTATGGAAAGCATGTCCATCAGTATCATGAGGATAAAGAACAAGGAAAGAACATTGTAGTGGTGGGCAGCTGGAACACTGAGGATCATTTTAACTGGGCCAAGAAAACGTGGCTCGATCTTATCATTTGAAAGATGATGGAGTACAGAAA

Function

symbol description
erlec1 Predicted to be located in endoplasmic reticulum. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; hatching gland; and otic placode. Orthologous to human ERLEC1 (endoplasmic reticulum lectin 1).

NR:

description
PREDICTED: endoplasmic reticulum lectin 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255902.1 True 1358 mRNA 0.49 13 13846841 13852454

Neighbor

gene id symbol gene type direction distance location
LOC122356402 mycla,LOC107680680,LOC107739875,LOC107553198,LOC107576479,LOC107654967 coding downstream 103817 13739649 ~ 13743024 (-)
LOC122356826 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 coding downstream 111019 13727742 ~ 13735822 (-)
erlec1 erlec1,LOC107654972,LOC107679899 coding downstream 162737 13679287 ~ 13684104 (-)
memo1 memo1,LOC107654980,LOC107705412 coding downstream 266745 13570790 ~ 13580096 (-)
LOC122356824 LOC107705409,LOC107600568,LOC107654911,LOC107683712 coding downstream 441298 13390572 ~ 13405543 (-)
LOC122356415 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 coding upstream 6376 13858830 ~ 13884172 (-)
zgc:153911 LOC107739899,LOC107683281,LOC107553199,LOC107705423 coding upstream 84314 13936768 ~ 13938825 (-)
si:dkey-157l19.2 LOC107705424,LOC107654964,LOC107602919,LOC107680818,LOC107739876,LOC107553200 coding upstream 93636 13946090 ~ 13968629 (-)
lgmn lgmn,LOC107705425,LOC107602950,LOC107654963,LOC107682791,LOC107739877,LOC107553201 coding upstream 117968 13970422 ~ 13977113 (-)
pcnx1 pcnx1,pcnx,LOC107683773 coding upstream 125638 13978092 ~ 14005778 (-)
G93855 NA non-coding downstream 158215 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 180581 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 182930 13661750 ~ 13663911 (-)
G93583 NA non-coding downstream 191492 13654379 ~ 13655349 (-)
LOC122356419 NA non-coding downstream 196108 13622766 ~ 13650733 (-)
G93905 NA non-coding upstream 335085 14187539 ~ 14189904 (-)
G94003 NA non-coding upstream 1019978 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 1128542 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 1426953 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 1752233 15604687 ~ 15605713 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 128527 13693026 ~ 13718314 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other downstream 278816 13564422 ~ 13568025 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other downstream 288007 13520413 ~ 13558834 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other downstream 521790 13309952 ~ 13325051 (-)
LOC122356414 NA other downstream 1249539 12557077 ~ 12597302 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 45804 13898258 ~ 13904702 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other upstream 57885 13910339 ~ 13911837 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other upstream 227078 14079532 ~ 14082790 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other upstream 307869 14160323 ~ 14164414 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 1172378 15024832 ~ 15099233 (-)

Expression


Co-expression Network