rel (LOC107726948,LOC107666554,LOC107601890,LOC107655447,LOC107559337,LOC107743496)


Basic Information

Item Value
gene id rel
gene name LOC107726948,LOC107666554,LOC107601890,LOC107655447,LOC107559337,LOC107743496
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9584404 ~ 9594240 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255907.1
GAGAGAATGTATATAGTGGGGAATTCCCACTCAGTAAACTATTCTGTGTTGAAGTGTTACTGTATATCTGTTCAGCAGCTCAGAGCGCGGAGGTAAAACCTAAGACGAGGGTGTTCGGATAGCTATGGATGTGAATGCCCTTTCAATGCACAGGGATCCCAATCTAATGGGGGAGCCCTGTGTTCAGATCTTCGAGCAGCCAAAACAGAGAGGCATGCGCTTCAGGTACAAATGCGAAGGTCGTTCAGCAGGCAGCATACCCGGAGAAAGAAGCTCAGACAATAACAGAACCTACCCAAGCATTCAGATTCTGAATGTTACAGTGAAAGGAAAAGTACGTGTTTCCCTGGTGACCAAAAGTGACCCGTATAAACCGCATCCCCACGACTTGGTGGGTAAGGACTGCAAGGATGGTTATTATGAGGCCGAGTTTGGACCCGAACGAAGAGTCTTTGCgtttcaGAACCTGGGCATCCAGTGTGTGAGAAGAAGAGAAGTGAGAGATGCCATAATGCAGAGAATTACGCGGAGGATCAACCCCTTCAATGTTCCCCGGGAACAGCTGCTGCAGACTGAGGAATATGATCTGAACGTGGTGCGTCTTTGCTTCCAAGTTTTCCTGCAAGATGAGACCGGGATGTACAACACCGCGCTGCCTCCCATCATCTCCAACCCCATCTATGACAACAGGGCCCCGAATACAGCCGAACTGCGAATCTGCAGGGTGAACAAGAACAGCGGCAGCGTGAAGGGAGGTGATGAGATTTTCCTCCTCTGCGATAAAGTGCAGAAAGATGACATTGAGGTGAGGTTCTTCACTCAGACCTGGGAGGCCAAAGGCTCCTTCTCTCAGGCAGATGTACACAGGCAAGTGGCCATAGTGTTCAAGACACCCGCCTACTGTGACACCACCATCACAGCCCCTGTCACAGTGCGCATGCAGCTGCGCCGGCCCACAGACCAGGAGGTCAGTGAGCCCATGGAGTTCCGCTATCTGCCCGACGACAAAGATCCATATGGCTGTCAAGAGAAGAAACGTAAAACTGAAAGCCAAATGAAGTCCTTCTCTGGATTCTCCCAAGGAACCATGAGCTTCATGAACAGACCAAAAGCAGTGCCTTCGGCAAGTTTGATGAATCAGAGAATCAAAATTGAGCAACCAACTTATTATCGTGGATCAAACCGTGGGGTGATGCGTCCAAATCCAGCATCCTTTTATAACAAAACCCTAACGGAAACCCCACCATCAGGAGCACAGAATCAAGCATGGTCCAGTTTAATCACCAACACCATCAGTAATGGAGCAGGCCTACAGCAGGTGAACCCAAGTCCTAGCATGCCCACCACAGGAGAAAGTGGGAACAGCCTTCCTCAACTGAGCCCTATGGATCTGGAGTTACTTCTATCTAATGGCCCAACCAGTAGCCAGCCTCGACAGGACCAACCAAACCAGCAGGTCCAGCAATCCCAACAGCCAGCTCAAAGGCAAGGAGTAGAAGCAGCCCACAACTGGTATAACTATAACCAACAACAGCCTCAAAGCACCCAGAACGGGGCAACAGGCACCGGTGGGTCAATGGGAACAGGTTACTTGTATACAAGCAACATAAATGAAGATTTGTTTCAAAACTTCATCAGCAATCAGCCAGTCCTACCACTGAAACAGGAAGACCAAGGGTCGAGCAACATGGCTGTGCTGGGGCCCAGCTCGGACTGTGGGCAGTCCTTCACCGCACTCCTGAACTCCACCACCATTAATGGAAGTACCGCAGAGACCATGAGACAACTGGAACCTGGTGGGGTCAATCAGAGGGCCTCGCATATATCCTACCCTGCCAGCGGCTTGGGGCAGGAGAGCAATCTTGATTCTTTCGCCTGGCAGTACTTCCAATAGAATCGAATTCTATAAGTGTTCAAGatgattttgttctttaaatgtagGCTCTGATTTATGTTCACTGAATGTATTTTGTGAAAATCAGAAGGGCTAGTTGTCCTGGAAATACTGTAAGATGCTGCCACCAATTAGGTAAGCAGTGagattttatgaaatgtttatgtatataacAGTCTGATGGTCATATTGGAGACGTTATGTCCACAAATTATGACAGTTTAATTGTGTTCCTTAAAGTGGGAACTAGCAGGGAATTGTCCCTGGGTAATGgctatgtcattttaaacatgcTTCTTATCCAAGGTTCTCAAATGTACTGTTCAAACATGGGTTTTCTTTGCTTACTCAGAAGTGATATTATGGCTTTAGAAAACTAAGACCGATGCCttattctgtttttactttattcaacatACGCAAGCTTTTACATGATATTTTCTATTGGtgagtttttgtatttttataaaattaaagtttataCTACTGAACATGGATTTTATGATTTCATGTATGTAATGTTTGATACATTCTGTGCTGATTTGTGGCTACATTTTTTGATATGTAGAGGTGTCCaaagtttgttttcattcataattataatttgaatgcatcatttatttctttttcacattcCACTGTTTACGTTAAATAAAGGATAAACTCTGTAA

Function

NR:

description
proto-oncogene c-Rel-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K09254 REL; c-Rel proto-oncogene protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255907.1 True 2565 mRNA 0.45 10 9584404 9594240

Neighbor

gene id symbol gene type direction distance location
pdlim1 pdlim1,LOC107666525,LOC107726967,LOC107601889,LOC107655446,LOC107743498,LOC107559336 coding downstream 9829 9569098 ~ 9574575 (-)
sgpl1 sgpl1,LOC107726953,LOC107601887,LOC107655444,LOC107559334,LOC107666355 coding downstream 20331 9553287 ~ 9564073 (-)
si:dkey-192p21.6 si:dkey-192p21.6,LOC107601802,LOC107726935,LOC107666356,LOC107655416,LOC107559314,LOC100702339 coding downstream 35437 9523227 ~ 9548967 (-)
ret ret,LOC107726966,LOC107666456,LOC107743501,LOC107655443 coding downstream 64427 9498234 ~ 9519977 (-)
csgalnact2 csgalnact2,LOC107666416,LOC107559332,LOC107655442 coding downstream 86691 9491569 ~ 9497713 (-)
papolg papolg,LOC107601893,LOC107726947,LOC107666450,LOC107559338,LOC107743495 coding upstream 2586 9596826 ~ 9606503 (-)
LOC122356762 vrk2,LOC107718826,LOC107693217,LOC107560458,LOC107585344 coding upstream 472685 10066925 ~ 10079168 (-)
LOC122356208 pcgf6,LOC107588739,LOC107707701,LOC107656932,LOC107585366,LOC107673880 coding upstream 704917 10299157 ~ 10305442 (-)
LOC122356628 LOC107707586,LOC107588654,LOC107688299,LOC107716331,LOC107673895,LOC107585321 coding upstream 751217 10345457 ~ 10349224 (-)
chata chata,LOC107588646,LOC107683741,LOC107707518,LOC107716339,LOC107673961,LOC107585314 coding upstream 1040725 10634965 ~ 10641860 (-)
G92367 LOC107666417,LOC107726946,LOC107655437,LOC107743505,LOC107601798 non-coding downstream 130097 9451223 ~ 9454307 (-)
G92314 NA non-coding downstream 133716 9450396 ~ 9450688 (-)
G92295 gsto1,gsto2,LOC107655421,LOC107743610,LOC107666511,LOC107601880,LOC107726961,LOC107559317,LOC107666561,LOC107726960,LOC107559318,LOC107743609,LOC107601879 non-coding downstream 178744 9398804 ~ 9405660 (-)
G92289 NA non-coding downstream 243334 9340345 ~ 9341070 (-)
G92277 NA non-coding downstream 449919 9134152 ~ 9134485 (-)
G92391 NA non-coding upstream 786 9595026 ~ 9595280 (-)
G92407 NA non-coding upstream 46229 9640469 ~ 9641201 (-)
LOC122356802 NA non-coding upstream 104773 9699013 ~ 10050383 (-)
G92427 NA non-coding upstream 106393 9700633 ~ 9700864 (-)
G92548 NA non-coding upstream 646026 10240266 ~ 10243061 (-)
G92267 NA other downstream 468853 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 1536503 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 1768025 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 3084831 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 3187978 6358201 ~ 6396426 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 580173 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1038010 10632250 ~ 10634566 (-)
G92819 NA other upstream 1330704 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 1606312 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 1931163 11525403 ~ 11532457 (-)

Expression


Co-expression Network