rtf1 (rtf1,LOC107655008,LOC107588567)


Basic Information

Item Value
gene id rtf1
gene name rtf1,LOC107655008,LOC107588567
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12379697 ~ 12391749 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255916.1
GCGCCTTTGTGTGGAGGAGTGCGGCGCTgctgtttaaacacacacacaggggagCCAGGCAGCTAACCATGGTGAATGTAAAGAAACGGAAAGGTCGGGTCGTGATTGACTCTGACTCGGAGGATAGTGCAAGCGATGATAATTTGGATCAGGAGCTGCTGTCTCTTGCCAAGAGAAAGCGTGTGGATTCTGATGAACAGGAAGAGCCTGTTAGTAAACCTGCCGCCTCCACAGACTCTGAGACATCAGACAGTGATGATGAGTGGACTGTTGGAGgcactaaaaccaaaaaaaaagggaagCCCAGCAAAGGCCCTGAAAAGAAGAACACAGTCAAGAAAAGAAAGGGCAAGGCGGCTTCGTCCGGCAGCTCAAATGGAGACAGTTCAGCAGAGAGCTCGGCTCCAGAAGAGGgtgaggtgTCGGACTCGGACAGTAAcagctcttcctccagctcAGATTCTGACTCGTCGTCAGAGGATGAGGTTTTCCGGGATGGTTATGGAGATGATCTAATGGGGGATGAGGAGGATAGGGCCAGATTGGAGCAgatgacagaaaaagaaagagaacaggAGCTGTTCAACCGTATAGAGAAAAGAGAAGTTCTTAAGAGGAGGTTTGAAATCAAGCAAAAACTGAAGACAGCGAAGAAGaaggaaaaggaagaaaagaagaagaaacaggagGAGGagcaagagaaaagaaaacagtctCAGGTCCCCGACACTCAGGTGGTGATGTCCCATAACAAAGAGAGACGCATCAAGAGAGACGAGAAGCTGGACAAGAAATCACAGGCCATGGAAGAGCtgaaagcagaaagagagaaaaggaaaaacagaacCGCTGAACTACTTGCTAAAAGGCAGCCACTAAAGACAAGCGAGGTCTACTcagatgatgaagaggaggaggaagatgatgatgacAAGTCATCAGTAAAGAGTGACCGCAGCTCAAGGTCATCATCTtttgatgaagaggaggaGAAAGAAGAGGCTCCGCCCAAGTCCCAGCCAGTGTCTTTACCAGATGAGCTGAATCGGATCCGGCTGTCCCGACACAAGCTGGAGCGCTGGTGTCACATGCCATTCTTTGCTAAAACTGTCACTGGTTGTTTTGTTCGAATTGGCATtggaaacagcagcagcaagCCTGTTTATCGGGTGGCTGAAATCATTGATGTGGTGGAGACGGCTAAAGTTTATCAGTTGGGGTCCACACGGACAAATAAGGGCCTTCAGCTCCGACATGGAAATGACACGCGAGTCTTCAGACTTGAGTTTGTGTCCAATCAGGAGTTCACTGAAAGCGAATTCATGAAATGGAAAGAGGCGATGATGTCAGCAGGAATGCAGCTTCCTACTCTGGATGAGATCGCCAAAAAAGAGCAGTCCATCAAGGAGGCGGTCAACTACAAATTCAATGACAAAGACATTGAGGATattgtcaaagaaaaagacagattCCGAAAAGCACCACCAAACTATGCCATGAAGAAAACGCAGCTTCTTAAAGAGAAGGCCATGGCTGAGGAGAGTGGAGATGGAGAGAAGGTGAAAGTACTGCAAGATCAGTTGAATGAGCTTGAGGAGAGGGCAGAAGCGCTTGACCGACAGAGAACCAAAAATATCTCTGCCATCagctataTCAACCAGAGGAATAGGAGTTGGAATATTGTGGAGTCTGAGAAGGCATTGGTGGCAGAGGGTCAGAACTCAAAGAACCAGCAGATGGACCCGTTCACCAGACGACAGTGTAAACCAACTATGGTGTCTAATgCGAGAGATCCCTCAGTCCATGCTGCGATTTTGGCTCATCTCAACCAGAAGTACGGTTCTGGGTCAGGCCAAGACAGCAGTCAGCAGGCTAATAAACAGGGCCAGCCTAGCCAGAAAGACAAAGATGTTACCAAGCCAACCAGTGACCTCTCAGAGGACCTTTTTAAAGTTCATGACTTTGATGTCAAAATTGACCTGCAGGTTCCCAATGCTGAAGCTAAGTCTTTGGCAGTGAGTTCGAATGCATTACCTGTGAAAGATGGGGCACCACGCCGATCTCTCAACCTGGAGGACTACAAGAAGAGACGAGGACTCATCTGacctacgttttttttttttttttaacctctcCTGCATGATTGGACACCTGTGCTGGAGGTGTACAGCTGCGGCtacccctgtgtgtgtgtgtgtttgggaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagaaaaaaagagagtgtaTGATAAAGAGAAGGAATAAGTGCATACCTTTAAGactgagtgtgtctgtgtgagtgtgtgtttcacCTGTTTGTAAGAGGAAATATTGATGAATAATGATAACCTTCAGGTCTTTTCCTGCAAAGGGCCAATTTTCAAGAGATGAAAAGTCCTCTGCATTATTTACGGCGTGTGCAGACGTGAGAACAGAAATGCATTACCTCTGATTCTCCTTTTCGTACCAGTGTATTCAGCATATTTTGTCTCACTCAGACCCTCTCAGAAACGGCCCTTTTATATCCAAGCTTGTGAATGACTATCTCAAAGgacactattaaaaaaagacaacacaaaTCTTGGGTTTTTTGGAAAGTTGTAATTAGTTGTCAATAATGTGATTGGGTCTCCCTCGCTCCCTCGTTCCTCCTGAAAACGCTCTGAAGTTTTTGAAcaagcattttcttttcttcctccaACCCATACGTAATGGGTTGTTAGGACAGTCCTGCTTAACTCTGCTTGCTGGTTTAGAGGCCGAAGGGGGCCAACCAATCAGAGGGAGTCTGACAATGACATCACACTccctaaatataaatgtttgtttcatgTAAGACAATGATAAATAAACATGTCTGCCATGGACAAGAGAACTTTGAGAATTGatgtatctttttgtttttactgtttttttttttttttttttttgtttgttttttttacttttttttttttcctcctaccATACCCCTCTGTCTCCCTCAGAGCTGATGTAAGTGTTAATGATCAATAATTATTGAAGTCTTTTAGTCAGTTCTTGTATCGTTGTGGCATGCCTTGTAAATAAGCGATCTTGAGTGAGTGCGGCTGAATAAAGGAGGAACTGTTTCATAa

Function

symbol description
rtf1 Predicted to enable RNA polymerase II C-terminal domain phosphoserine binding activity. Acts upstream of or within several processes, including neural crest cell development; post-anal tail morphogenesis; and somitogenesis. Located in nucleus. Orthologous to human RTF1 (RTF1 homolog, Paf1/RNA polymerase II complex component).

NR:

description
PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0007507 heart development biological_process
GO:0001756 somitogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0016570 histone modification biological_process
GO:0014032 neural crest cell development biological_process
GO:0043473 pigmentation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15178 RTF1; RNA polymerase-associated protein RTF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255916.1 True 3155 mRNA 0.45 18 12379697 12391749

Neighbor

gene id symbol gene type direction distance location
golga5 golga5,LOC107588574,LOC107705390,LOC107585491 coding downstream 480 12373606 ~ 12379217 (-)
trip11 trip11,LOC107655016,LOC107588575,LOC107585490,LOC107675555 coding downstream 6706 12354697 ~ 12372991 (-)
fbln5 fbln5,LOC107585489,LOC107724235,LOC107588577,LOC107655017,LOC107705389,LOC107675578 coding downstream 28171 12341913 ~ 12351526 (-)
LOC122357133 tc2n,LOC107705388,LOC107654930,LOC107724545,LOC107588684,LOC107675517 coding downstream 37921 12333170 ~ 12341776 (-)
plek2 plek2,LOC107655018,LOC107705386,LOC107585533,LOC107724538,LOC107675532 coding downstream 48363 12327780 ~ 12331334 (-)
nusap1 nusap1,LOC107585493,LOC107724270 coding upstream 4032 12395781 ~ 12399528 (-)
LOC122356084 LOC107705397,LOC107654925,LOC107588565,LOC107675586 coding upstream 49290 12441039 ~ 12444878 (-)
btbd6a btbd6a,LOC107724364,LOC107588564,LOC107705400,LOC107655006,LOC107585501 coding upstream 66122 12457871 ~ 12461979 (-)
rrbp1a rrbp1,LOC107705351,LOC107654983,LOC107585504,LOC107675545 coding upstream 168409 12560158 ~ 12575184 (-)
snx5 snx5,LOC107654994,LOC107705401,LOC107724504 coding upstream 188399 12580148 ~ 12586465 (-)
LOC122357111 NA non-coding downstream 132757 12121940 ~ 12246940 (-)
G93315 NA non-coding downstream 212799 12114926 ~ 12166898 (-)
G93148 NA non-coding downstream 337768 12041695 ~ 12041929 (-)
G93144 NA non-coding downstream 342879 12036612 ~ 12036818 (-)
LOC122357025 LOC107585516,LOC108412594,LOC105899417 non-coding downstream 350075 11983711 ~ 12029622 (-)
LOC122356854 NA non-coding upstream 9922 12401671 ~ 12406933 (-)
G93392 jag2a,LOC107654986,LOC107705348,LOC107724379,LOC107675567,LOC107600569,LOC107585503 non-coding upstream 140232 12531981 ~ 12533886 (-)
G93394 NA non-coding upstream 142237 12533986 ~ 12535068 (-)
G93460 NA non-coding upstream 713330 13105079 ~ 13105684 (-)
G93470 NA non-coding upstream 765181 13156930 ~ 13158437 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other downstream 86103 12278454 ~ 12293594 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other downstream 580665 11771428 ~ 11799032 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other downstream 731662 11643930 ~ 11648035 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other downstream 847240 11525403 ~ 11532457 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other downstream 1160712 11200552 ~ 11218985 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other upstream 37448 12429197 ~ 12430778 (-)
LOC122356414 NA other upstream 165328 12557077 ~ 12597302 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other upstream 918203 13309952 ~ 13325051 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other upstream 1128664 13520413 ~ 13558834 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other upstream 1172673 13564422 ~ 13568025 (-)

Expression


Co-expression Network