ndufaf1 (ndufaf1,LOC107655011,LOC107705394,LOC107588570)


Basic Information

Item Value
gene id ndufaf1
gene name ndufaf1,LOC107655011,LOC107705394,LOC107588570
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12391759 ~ 12395946 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255920.1
ACTACGCATGCGCACACGTCACCCCATAAACATCGAGTACAAACATACCGGATCAAAAATGCGCTGTATCTAATTATTCATCATCTGTATACATACAGGGGCCGAAAATTATAATGGCATTTGTTAGTCGCTACATGCCTGCGAGAGAGATTTGTTGTCGGTAGGACCACAAGCACTTGTGATTGTTTCAGAATTCTACTGGATGTCAAAATGCAAATGATTCTCTCTAAACCAACATTAAAAACTCTGTTTGGAGTTTATGGTGTCATTCACAGACAGTCTCTGTTATTGCCATCTCCCCTGAGATGCTCAGCTGTACTAAGCACCATAAACATCTATAAGCGTGATTACCGCAGACCAGGCCAGCCTCTAGACAACCGCTGGCCCTGGCAAAAGATACAGTTTGATTTCTCCAAAGGTGTGGAGGGTATCAAGAAGCACATTGGGTTGTTGAAGGATGAGTTTGTTCAACCCTTGATTGGACCTGAAGGACGGCCGTTATTACATCACATGCTGGAACAAACACGCGTCCAGTGGGAGTTTCGTGGACCAGAGAGTCTCAAACAGTGGATGGTGTCATCCGATCAAGAGATTGGGGGCCGCAGTGAGGCATACATCAAACTAGGCAAGAACAACATCACATGTTTGCTGTACGGGACCTTGTGCTCTACACCTCCTCGTGATGGAGAGACACGATACAGTGGATACTGTACTCTGCGCTCCAAACTACCTCTGgcctcatttgacagaaaaaaaacctatgACTGGACAAATTTCAACACGTTACATATGCGTATCCGGGGAGATGGAAGACCGTGGATGGTAAACCTGGCTGCTGATACCTTCTTTTCTCATAACAAAGATGACATCTACAGTTACTTCCTCTACACTAGAGGGGGACCCTACTGGCAGGATGTCAAGATCCCATTCTCCAAGTTTCTATTTTCCAGCCGGGGAAGAATACAGGATAACCAAAATGTCCTCTGGTTAGATAAGATAAAGACTATTGGTTTTACATTGGGGGATAAAGCAGACGGCCCGTTTCAGCTGGAGATTGACTTCATTGGTCTGGCCAATGACCTTGCCCACACAGAGGAGTTTGCATATGAGCTTTACAAGAGAAACCCGGAAGTCTAATTGTAATTGGAAATAGATTCAGCAATtgtagatgacagacagacactgatttattatgaaaaactacacacacacacaaaatgacaaCATGTAAGACAAAATAGTACAAAACGATAATTTATGAATTCAGctcatattcaaataaacattttgtgtgaCCGAAGTTTTGAGTGACTTCACTGTTTTTATCTTTACAATTACTTTATGCCCAATACAAATAACAATTCATACTAAAAATACATCAGGGCAAACACTCTTTTTACAcaaatcaaaattttaaaagtttaaattctTATCtataaatggatttaaaaacaacaaatgctttAGTTGGGTGACCTCACCTCATACTAAGCATATTAACctagcaaaaaaatgtttacagaacagcaaaatatgtacaaaagtttggaaaaaaaaaaaaaagctaaacatgTACAGTGAGTGTATAAAATAgcaaacagtaaaaacactgGAGTTAGGCCATGACCAGACCTCGCCTGGCACCCAacatcttctctttcttttgttttcggTCTTCTGTCTGCTTGGCACGTCGCTcctctctaaaaaaataaataaataaaaaggcaaaa
>XM_043255921.1
ACTACGCATGCGCACACGTCACCCCATAAACATCGAGTACAAACATACCGGATCAAAAATGCGCTGTATCTAATTATTCATCATCTGTATACATACAGGGGCCGAAAATTATAATGGCATTTGTTAGTCGCTACATGCCTGCGAGAGAGATTTGTTGTCGGTAGGACCACAAGCACTTGTGATTGTTTCAGGTAAGGACAGATATATGACGGACCGTAATGGCGTGGATGAGTGTTAAAAATTCTACTGGATGTCAAAATGCAAATGATTCTCTCTAAACCAACATTAAAAACTCTGTTTGGAGTTTATGGTGTCATTCACAGACAGTCTCTGTTATTGCCATCTCCCCTGAGATGCTCAGCTGTACTAAGCACCATAAACATCTATAAGCGTGATTACCGCAGACCAGGCCAGCCTCTAGACAACCGCTGGCCCTGGCAAAAGATACAGTTTGATTTCTCCAAAGGTGTGGAGGGTATCAAGAAGCACATTGGGTTGTTGAAGGATGAGTTTGTTCAACCCTTGATTGGACCTGAAGGACGGCCGTTATTACATCACATGCTGGAACAAACACGCGTCCAGTGGGAGTTTCGTGGACCAGAGAGTCTCAAACAGTGGATGGTGTCATCCGATCAAGAGATTGGGGGCCGCAGTGAGGCATACATCAAACTAGGCAAGAACAACATCACATGTTTGCTGTACGGGACCTTGTGCTCTACACCTCCTCGTGATGGAGAGACACGATACAGTGGATACTGTACTCTGCGCTCCAAACTACCTCTGgcctcatttgacagaaaaaaaacctatgACTGGACAAATTTCAACACGTTACATATGCGTATCCGGGGAGATGGAAGACCGTGGATGGTAAACCTGGCTGCTGATACCTTCTTTTCTCATAACAAAGATGACATCTACAGTTACTTCCTCTACACTAGAGGGGGACCCTACTGGCAGGATGTCAAGATCCCATTCTCCAAGTTTCTATTTTCCAGCCGGGGAAGAATACAGGATAACCAAAATGTCCTCTGGTTAGATAAGATAAAGACTATTGGTTTTACATTGGGGGATAAAGCAGACGGCCCGTTTCAGCTGGAGATTGACTTCATTGGTCTGGCCAATGACCTTGCCCACACAGAGGAGTTTGCATATGAGCTTTACAAGAGAAACCCGGAAGTCTAATTGTAATTGGAAATAGATTCAGCAATtgtagatgacagacagacactgatttattatgaaaaactacacacacacacaaaatgacaaCATGTAAGACAAAATAGTACAAAACGATAATTTATGAATTCAGctcatattcaaataaacattttgtgtgaCCGAAGTTTTGAGTGACTTCACTGTTTTTATCTTTACAATTACTTTATGCCCAATACAAATAACAATTCATACTAAAAATACATCAGGGCAAACACTCTTTTTACAcaaatcaaaattttaaaagtttaaattctTATCtataaatggatttaaaaacaacaaatgctttAGTTGGGTGACCTCACCTCATACTAAGCATATTAACctagcaaaaaaatgtttacagaacagcaaaatatgtacaaaagtttggaaaaaaaaaaaaaagctaaacatgTACAGTGAGTGTATAAAATAgcaaacagtaaaaacactgGAGTTAGGCCATGACCAGACCTCGCCTGGCACCCAacatcttctctttcttttgttttcggTCTTCTGTCTGCTTGGCACGTCGCTcctctctaaaaaaataaataaataaaaaggcaaaa

Function

symbol description
ndufaf1 Predicted to enable unfolded protein binding activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone and mitochondrial respiratory chain complex I assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 11. Orthologous to human NDUFAF1 (NADH:ubiquinone oxidoreductase complex assembly factor 1).

NR:

description
complex I intermediate-associated protein 30, mitochondrial

GO: NA

KEGG:

id description
K18159 NDUFAF1, CIA30; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255920.1 False 1733 mRNA 0.40 5 12391759 12395946
XM_043255921.1 True 1781 mRNA 0.40 5 12391759 12395946

Neighbor

gene id symbol gene type direction distance location
si:ch211-10a23.2 si:ch211-10a23.2,LOC107654931,LOC107724523,LOC107675536,LOC107588580,LOC107585488 coding upstream 64240 12324044 ~ 12327519 (+)
rdh12 rdh12,rdh11,LOC107705384,LOC107585486,LOC107588583,LOC107724212,LOC107675518,LOC108439707 coding upstream 93034 12294205 ~ 12298725 (+)
arg2 arg2,LOC107675544 coding upstream 106714 12278556 ~ 12285045 (+)
slc66a3 pqlc3,LOC107706924,LOC107681540,LOC107675554,LOC107757120 coding upstream 208494 12180247 ~ 12183265 (+)
sobpa sobpa,LOC107706905,LOC107681548,LOC107757118,LOC107585480,LOC107588585,LOC107675556 coding upstream 219416 12144638 ~ 12172343 (+)
oip5 oip5,LOC107655012,LOC107705396,LOC107588571 coding downstream 3718 12399664 ~ 12401608 (+)
tmem39b tmem39b,LOC107675583,LOC107705392,LOC107655009,LOC107585496 coding downstream 10965 12406911 ~ 12414269 (+)
ccdc28b ccdc28b,LOC107675524,LOC107585497,LOC107705395,LOC107588714,LOC107654929 coding downstream 18922 12414868 ~ 12420469 (+)
iqcc iqcc,LOC107705368,LOC107588566,LOC107655007 coding downstream 24669 12420615 ~ 12423344 (+)
dcdc2b LOC107654928,LOC107588713,LOC107724332,LOC107675534 coding downstream 27730 12423676 ~ 12429124 (+)
G93267 NA non-coding upstream 6141 12385307 ~ 12385618 (+)
G93219 NA non-coding upstream 10908 12379709 ~ 12380851 (+)
G93222 NA non-coding upstream 17628 12363065 ~ 12374131 (+)
G93200 NA non-coding upstream 124693 12202742 ~ 12267066 (+)
G93190 rock2,LOC107588686,LOC107681539,LOC107707968 non-coding upstream 202721 12186068 ~ 12189038 (+)
G93280 NA non-coding downstream 52428 12448374 ~ 12450446 (+)
G93295 NA non-coding downstream 172538 12568484 ~ 12569100 (+)
G93285 NA non-coding downstream 199976 12595922 ~ 12597301 (+)
G93306 NA non-coding downstream 206245 12602191 ~ 12602541 (+)
G93474 NA non-coding downstream 768091 13164037 ~ 13164313 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other upstream 786907 11603697 ~ 11604852 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other upstream 799159 11571660 ~ 11592600 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other upstream 978244 11389385 ~ 11413515 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other upstream 1129139 11255594 ~ 11262620 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 1173584 11213526 ~ 11218175 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 35973 12431919 ~ 12436643 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 106439 12502385 ~ 12535071 (+)
G93296 rrbp1 other downstream 175685 12571631 ~ 12575212 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other downstream 190940 12586886 ~ 12588998 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other downstream 738527 13134473 ~ 13158440 (+)

Expression


Co-expression Network