gabrg1 (si:dkey-155h10.3,gabrg1,LOC107747559,LOC107666522,LOC107667066,LOC107585224,LOC107569420,LOC107733747)


Basic Information

Item Value
gene id gabrg1
gene name si:dkey-155h10.3,gabrg1,LOC107747559,LOC107666522,LOC107667066,LOC107585224,LOC107569420,LOC107733747
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6029208 ~ 6039909 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255926.1
ttttagCATTGTAGTAATTACATGTTTGCTTGGTGATCACCAAAGCTCTCTCTGCTGTGCTGTATATCATTAAACCCACATGCTGCCTCAGACGTTCATTCAATATCACTTTTGGATTTCAAAACCGAATGCAAAGCCAATGCCTGATAAGGCAGAGAGGCATAAAGTAAGCCGCCTGCTTTCAAATAAGGCCCTAAACACACGAACACACATTCACTTATGAATCTAAatggaaacacatttttacccaatctttttatataaagattttacCCAATCTTTTTTCTACAACCAACCCCACATCCTAATTTTTGTCTCGTCAGATTTAGCTCACttccaagtaaaaaaaaaaaaccttctcaAAGTATGGTTATAGTaggcacacacgcacatacataatgattatttgtttttcatgatGACACTTATGATTTTCATACTGTAAAACTGTCCATTTCTATTCTCTAAACCTAACCCTTACAGAAAGCATTTACAAAACATCATTTTGTATTCTTCATGAGGACCGGAATCATGGCCCCACAACATCGTACATTTAAGGTAAAAAGTAAGAtgaatttcaataaaaaatgtaactttttgatTCATCCTCTCcaataagtaataaaaacagtCTTATTCTTACATAGCCTTTGGGCTATAAGAGTAGGTTCGGCAAGCACAAAAGCTATAACCACTGATCTATATATAATGACatacatgattatatataaaatgttctcTATTATATATCAGTGGCTATAACCTAAAAACATCATAAAGGCTCCAAATACGCACGCGGACAGAAATCGCGTCAGAGGGTTACCATAGCAACAACACGCCGCTCGATCAATTGCCTCACATTGTAGGCCACGTATATAACACAGCAGTACATCATTAAAACCcttataaataacaaaagcgTTTCAGTAGACTGTCGTTTTAGTTagttaatttgacatttttagtaCATAAGACCAGTCACTCTGTTTAACGGCGAACCCGTAATTTGATTGCTCATCCATACACACCATCATTGCACGAGATACATTTGAACTTTATAGACTAAATTCTATAGTTAATTTTGGTCACGGCAGGCTGCTTTGCCCATCCCGGCGCGACGTTGGAAATGTCGCATTTGTCACTTTATTAATTCCGAACAACAGCAAAACTAAGTAAAGGCGCCATAAATCACAGCTTGATGTACGGTCTCCGAGGTAGAGCAGTCAGCTCTTTTTCTACAGGCGGTTTCTAATAACTCCCGGAACATCGAGAGCGTCTCACTCAGCAGATCGCCGGATGAACACAGCGGTGCCGCAATCAGCGAAATCCCGCATTCAGCGCTCACGTCCGCGACGCCTCTGCCGCCTCGCGCACACGCCGTGGGCTCTAGCTATGTGCATTCGTCTAGACAGCCACTGACAGCGTACGCCGACGCTTTCGACCGCCGCGTTAAGCACCGCTCACGGTTTTTAGGCGCTAGTTCACCTCGGACACCGCTTTGGTTTCGGACCGAGCTCTCGCACGATGGTCCTGCTGCATCGCCGCCGGAGAAAAGAGACGCTGGTTTGGCTGCTGCCGGGTCTGCTCGGAGTCTGCATGGCATTTGGCCCGAGCAAAGCAGAGGAGGAAGATTACGAGGATGTCCCCATAAATAAAACTTGGGTTTTATCACCAAAGGTCTACGAGAGCGACGTCACCCTTATCCTAAACAAATTACTGCAAGGTTACGACAACAAACTGAGACCGGATATCGGAGTGAGGCCGACCGTGATCGAGACGGCAGTGTACGTGAACAGCATAGGTCCCGTAGATCCCATCAATATGgaGTACACCATAGACATCTTCTTTGCTCAGACGTGGTACGACAGCAGACTCAAGTTCAACAGCTCAATGAAGCTCCTCATGCTCAACAGCAACATGGTCGGAAAAATCTGGATCCCTGACACCTTTTTCCGCAACTCGCGCAAATCTGACGCCCACTGGATCACGACACCCAATCGCCTTCTGCGCCTCTGGAGCAATGGAAGAGTGATGTATACTCTGAGGTTGACTATTAATGCGGAATGCTACCTTAAGCTGCATAACTTTCCCATGGATGAACATTCGTGCCCTCTGGAGTTTTCAAGCTATGGCTATCCAAAGAATGAGATCCAGTATAGATGGCAGCGTCGCTCGGTTGAGGTCGCAGACCAGCGATACTGGAGGCTCTACCAGTTTGCCTTTGTGGGTCTGAGGAACACTTCTGATGTGGCACACACTCAGTCTGGGGAATATGTGGTTATGACCATTTTCTTTGACTTGAGTCGGAGAATGGGCTACTTCACCATCCAGACCTACATCCCCTGCAGCATGATTGTGGTTTTGTCCTGGGTCTCTTTCTGGATTAACAAGGATGCTGTGCCTGCCAGAACATCTTTAGGTATCACAACTGTGCTCACCATGACAACCCTAAGCACCATATCGAGGAAGTCCTTGCCGAAGGTGTCGTACGTGACAGCCATGGatctgtttgtgtctgtctgctTCATCTTCACCTTTGCTGCTCTAATGGAATACGGGACCCTGCATTATTTCACAAGCAATCGACAGAACAAGAAGACCAAATCAAGCCATGCACAGAAACCCAGCATGGTTAACATCAGACCAGGGACATCTCTGCTGCAGATGAACAATATTGCTCCCTACCACGAGGATGACGATTATGCGTATGAATGTCTGGACGGGAAAGACTGCACCAGTTTCTTCTGCTGCTTTGATGATTGTCGCTCCGGAGCTTGGCGTGAGAACAGAATGCATGTCCACGTCTCCAAAATCGACTCCTACTCCCGAATATTCTTCCCAACCGCCTTTGGCCTCTTCAATCTCGTCTACTGGATTGGATATCTGTACCTTTAAAGATGTTGGGCAAGATGTTGGGACTCGGTTCTAGTAATATTTGCAAATCACTTGTAAATTTTCCATCTGCTAAATCTGGCAGCATAAATGGTTGAGAGAAGGGGATGCGTGAGGCTTGATTTGGACGTATTAGTACTTAATGTATCTTTAATTGTACCTGGTATTTAATTTATTGGAGAATCTAAATCTTGGAAGGACGATTACTGTGATTCTGCATTGACGCCAACTGAATATTACCAGCGCTCTCGTTTTTTGAGAAGGATGTTTGCTTTTCCATTAGTTACGCAGGCCATATCAAACCTTGATTGCCTAGTTTAAAACAATCTCTTAAAACCTGCATTTTTTAAACCGCAATATTAGCATCTCTATTGCAACTATGATAAAACTTCAGGATATTATCTCTCTGGCTGaagcaaaatattattgtttgcAAGGAAAGGTAGATATATTAGTCGCTTCTGATGTTAATTTTCCGAGATAAGCGAAGCTAGCTACTTGTCAGAAAACTAATACTTACATATTAATCTCTCAGAATGTTTTCAATTCAAACTTAAAACAGCTACATTTCTTTGTGAATTACCTGCATTCAGTCATGTACTAAACAAACCAAAGCATAGATATCTGAAGGTTACGTGAAAAGAATTTTGTTCAGCTCAAGAATTACCCAGAAGCCATTTACTTGGAATTAGCCTATAATGATACTGTGAAATGTTCTTGACTTGAACTAATAAGCCGTCTCTGCAATAGATGACACAATGAAATGCCAGTGTGCCCAAGATAAAAGGGTTCacgtgttattttttatatgtcaAACAAAAGGAATAGAGCAGCCTTTACAATTCACAAATGTTCAGTGTCCTTTAGTACAAATTAGAGTTCACCACCCTCTTCCGTATTCAAGACAGCATTTTGTCTCTCCTCGCGAACGGCGTAATCAGCGTAATTGCATGACTCATCTGAGCTCATCTGAGCTAATCAACCCGTATTTGGAAACGGGTCTGATGGACTTTCTTCAGCAGAGGAGCTAGACAGTCTCAAAAACCACGACATCTTCATAACACAAACCGTGGATGCCTTCTGTATTGGTAATCGACTAAATCAAAAGGCCATTTAATGTGTATTTGCCTTACATTCGATTAAATCTGATCTCAGAATCCTATTGGGTTTGAGAATCAGATGAACGGAGCGTGCGAGTGACTCTCGAAACATCTGTGCACGAAATATACAAGTGTTTTTCTCGATCTCCTGTTACGCTTTCGGCtgttgcttgttttatttcatgcttCCATGTGGTTTGTCTTTTGCTGGCTGTTATCTTGATCACAGACtgctctgttttctctctttctgaacATCTGTTATATACTGTGTTGTGCCCTGTAGCTTAATATATTCTGTATCGTTATCTTTTTTAATGACAGCCTCGTAGTTACAGACTCATGCAACAACCAGAtgatagtacaaaaaaaaaaatagcgctggataatctatttatatttttgcatataaataggTTATGACACGAATATCTATTAAACATCATCTGTTTCAGACCTTTAATAATACAGATCAGTGACCTTCATGTATCTGTGTgagcgtgtgcatgtgtgtctgttcGTGAGTGTATTCAAAGCAGACTCTCAGCGTCTCTCGGCTCTGCTCTCCACTCGTTCTTGGTGTTGTCGTAGTGTCTTCTGTAAGCGCTAACCTTCATGCTTTTAACGTGTTCATATGATTTTGTAGCTCTGAACACTGTGAGTAATAAAACAGTGCctgcaaaacattaataaaattctACGCTCTCTCAAA

Function

symbol description
gabrg1 Predicted to enable GABA-gated chloride ion channel activity; inhibitory extracellular ligand-gated ion channel activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in dendrite membrane and postsynapse. Predicted to be integral component of plasma membrane. Is expressed in cerebellum. Orthologous to human GABRG1 (gamma-aminobutyric acid type A receptor subunit gamma1).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit gamma-1 isoform X1

GO: NA

KEGG:

id description
K05186 GABRG; gamma-aminobutyric acid receptor subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255926.1 True 4704 mRNA 0.42 9 6029208 6039909

Neighbor

gene id symbol gene type direction distance location
gabrb1 gabrb1,LOC107747557,LOC107666521,LOC107733746,LOC107585222,LOC107667065 coding downstream 19678 5987132 ~ 6009530 (-)
atp10d atp10d,LOC107747560,LOC107556926,LOC107666484,LOC107733756,LOC107667075,LOC107585234 coding downstream 47103 5961519 ~ 5982105 (-)
dapp1 dapp1,LOC107747563,LOC107667071,LOC107666557,LOC107733757,LOC107585227 coding downstream 69723 5952370 ~ 5959485 (-)
rrh rrh,LOC107666394,LOC107585226,LOC107733708,LOC107667069 coding downstream 78919 5947084 ~ 5950289 (-)
lingo2b lingo2b,LOC107666555,LOC107556920,LOC107733787,LOC107747569 coding downstream 140383 5874187 ~ 5888825 (-)
gabra2a si:dkey-52k1.6,gabra2,LOC107747556,LOC107666515,LOC107569424,LOC108262858 coding upstream 5353 6045262 ~ 6059144 (-)
trim8a trim8a,LOC107666453,LOC107747550,LOC107667064,LOC107733745,LOC108421648 coding upstream 75797 6115706 ~ 6133936 (-)
sufu sufu,LOC107666454,LOC107667077 coding upstream 94704 6134613 ~ 6146031 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908 coding upstream 172632 6212541 ~ 6219756 (-)
zbtb18 LOC107587843,LOC107666464,LOC107747541,LOC107585250,LOC107733762,LOC107698757 coding upstream 214688 6254597 ~ 6263995 (-)
LOC122356110 NA non-coding downstream 99717 5926993 ~ 5929491 (-)
G91210 fgfr3,LOC107733743,LOC108263592 non-coding downstream 296530 5731256 ~ 5732678 (-)
G91085 NA non-coding downstream 767085 5261065 ~ 5262123 (-)
G91066 NA non-coding downstream 898259 5130351 ~ 5130949 (-)
LOC122356716 NA non-coding downstream 899501 5128512 ~ 5129707 (-)
G91364 NA non-coding upstream 59359 6099268 ~ 6101183 (-)
G91395 LOC107666411 non-coding upstream 143725 6183634 ~ 6183997 (-)
G91406 NA non-coding upstream 166185 6206094 ~ 6207963 (-)
G91420 NA non-coding upstream 250972 6290881 ~ 6292203 (-)
G91454 NA non-coding upstream 406589 6446498 ~ 6448426 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 102531 5920502 ~ 5926677 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 1249476 4690882 ~ 4779732 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other downstream 1340040 4672966 ~ 4689168 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 1973795 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 2073253 3951763 ~ 3955955 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 21776 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 180266 6220175 ~ 6227272 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other upstream 318292 6358201 ~ 6396426 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 413622 6453531 ~ 6499573 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1769940 7809849 ~ 7816379 (-)

Expression


Co-expression Network