ifit8 (LOC107747472,LOC107582559,LOC107690202,LOC107678487,LOC107577686,LOC107589567)


Basic Information

Item Value
gene id ifit8
gene name LOC107747472,LOC107582559,LOC107690202,LOC107678487,LOC107577686,LOC107589567
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1011545 ~ 1014177 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255940.1
TTCTTTGTAAACATTCACTGACTTGATAGTAGGCTTCTTACACATCTGCTTGCAAGTACTGTGAGTGAAtcgtaattattattatttttagcacattgctgtttttcatttgatttagtCTGCTTTATCATATCACGAATCTCTATGCTTTTCCCTTTGTCCTTGACCTTCGTTTTACACATAATATAACCCTCATCTGCTCTAGAAACGAAAACTTTACTGGGTTGTTGACGCAGCTCCCTTAGTTTCGTTTATCGTTAATCTGAGCAATAGGTGGAAAGTGAAACTTAGCTTGTTACTGTCCCCCCCAAATAAGTAACCTTCCCTTGTCATACCCTCCCTATAAAAACCATCCTCAGTTTCTATATTCAAACAGACAACGTGTGGATGAAGAAATAAAGCTGTAGAAGgaATGTCTGAGGACAAGCTTAAGCTGTTGTCCTGCCACTTTACTTGGGACCTGAAAAAGGAGGACGCCGACCTTCATTTTCTCGAAGTGAAAATTTGTGAAAGACTGGCAGTGAAACGCGAGTATGAAGGAAACCTGAAACAAagagaattaaattttttggcCTTCGTTAAACACTTACAAGGATTTGACGAAGAGGCGCTTAAGACCCTGCGACTGGCAAAGGAGGAACATCCGGACGATGACAGCAATGTGATCGTGACGTACGGAAACTTGGCCTGGGTGCACGGTCTCACGGGCAATGGGACTGAGGCTGAGACTTACATAGAGAAAGTGAATGAAATCCTAAGAGCTTTCCCTGCCCCGGCTCCAGCAGAGCTTCACAGAGAAGTTCAAAGCGAAAAAGCCTGGTCGCTTCTCAAGTTTTCTAGAAAGACCTACATCAGGGCTAAGGAGAGCTTCCTTGAAGCTTTAAAGAAAGAGCCGGATGATCAGGAATGGAACACAGGCTTCGCTTTTTCTCTGTTTCGTCTGGAGGGACTGGAGATTGGTCAGTACAGACGTGTACGGTTTGAAGAGTCTCCTGCTGTGCTCCAGCTGAGGAAGGCTCTGAACCTGGACCCGGACAACGCAATGATCCATGTGTATCTGGGGCTTAAGAGCTACAAGAACGCGAACACTGTAAATAACGCAGAGGCGTGGCAGTACATGACGCGAGCGCTCGAGATGGCTCCAGATAACCTCAGCGTTGTTTTGCGCGTTGCAAAGTTCATGAAGAAAGAGCAGTGTTATGACAAGTCCCTGAAAGTGCTGCTGGAAATGCTGAAGATCGCACCAGGCTCGTCACGTTTACATCACGAGATCGCCAACCTCTACCGCTGGAAAGCCATGCAGATGAATGACGCACACAACCCGGAGCTGCTGGACCTTTGCATCCAGCATTTGGAGGAGGGTGCCAGGTTAAACCCAGGCTACATATACCCACAGCTGGAGTTGGCGCTGAGGTACGCGGAACGAAAGCAGGCGGCTAAAGCAGAGCAGAAGTTCACCGAGCTGTTTGCCCTTCCTGACCTGAAGCCAGCTGACCGTCAGGCCTGGCGTCGCATGTATGGGGACTTCAAACAGTACAGGTGGGGCTCAGAGAAAGCTGCCGTTGAGCATTACAAGCAGGGGATGATGCTGGGGCAGGTGTCCACCGAGTGGTTCACATGCAGAAACAGACTGAGAAAAGTCCTTCAGAATGACAGACGGGACACGTATGAGATCCGGACGTTCTTTCATTCCCTTAAAACAGAGAACAAAGACGATTAAGAGAGAACCGTTCAATTCctgtcagaatcttcactcattagcattttttcattttcgtttTTGATTCACTGAGTGTTAGCAgagttaaatataaattgttctttttttctataatcTGTTTTTCCGTAtgcttattataaatataactataacaCAATAATCCTTATGCGTCTTTTCAAGTTAGTTAAACCTCACATTTAAACCTCACAACTAAAACTAGTTTTTTAGATGCCGTTTTTCATTAGgtgattgttttgtttacaggtgtaaagtactgagtaatattaattaactacaagTAGTAACTCTATGGTTGGGATTAGGTTTGCTTGCGTGTAATTGTGCATAATGTAACTTGTAACAAGGACAACtcaaaaatgaagtgttactgatgtatttttctttaagcTACTGATGATTAATTGCTGACAGTATGTGTCTGAACTGAAGGAAATATTGACCATTACTGAATTGCtgttaataaatgaacataacaCCTG

Function

NR:

description
interferon-induced protein with tetratricopeptide repeats 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255940.1 True 2220 mRNA 0.44 2 1011545 1014177

Neighbor

gene id symbol gene type direction distance location
znf503 znf503,LOC107747464,LOC107708443,LOC107582504,LOC107589531 coding upstream 73816 931312 ~ 937729 (+)
LOC122357037 NA coding upstream 202125 808535 ~ 809420 (+)
LOC122356634 kcnma1a,kcnma1,LOC107582501 coding upstream 333946 563819 ~ 677599 (+)
LOC122356635 LOC107698159,LOC107747466 coding upstream 471115 380963 ~ 540430 (+)
anxa11a anxa11a,LOC107721228,LOC107708439,LOC107698157,LOC107582500,LOC107589536,LOC107678500 coding upstream 691502 306723 ~ 320043 (+)
LOC122356862 LOC107747462,LOC107690182,LOC107582548 coding downstream 135 1014312 ~ 1021027 (+)
tet1 LOC107582512,LOC107690175,LOC107747454,LOC107708452,LOC107589523 coding downstream 157679 1171856 ~ 1205536 (+)
eif4e1c eif4e1c,LOC107582514,LOC107690176,LOC107708453,LOC107747456,LOC108444323 coding downstream 194066 1208243 ~ 1214044 (+)
zgc:110319 zgc:110319,LOC107690174,LOC107582515,LOC107747453,LOC107708456,LOC107678512,LOC107589524 coding downstream 206978 1221155 ~ 1224114 (+)
ccar1 ccar1,LOC107747452,LOC107690173,LOC107708455,LOC107582549 coding downstream 210663 1224840 ~ 1245971 (+)
G89714 NA non-coding upstream 3329 1007862 ~ 1008216 (+)
LOC122356899 NA non-coding upstream 46456 960669 ~ 965089 (+)
G89675 NA non-coding upstream 323096 687427 ~ 688449 (+)
G89669 NA non-coding upstream 327773 683478 ~ 683772 (+)
G89635 NA non-coding upstream 506639 499262 ~ 504906 (+)
G89718 NA non-coding downstream 7358 1021535 ~ 1021880 (+)
G89719 LOC108444242,LOC103386924,LOC107747461,LOC107690181 non-coding downstream 10396 1024573 ~ 1026667 (+)
G89721 NA non-coding downstream 12796 1026973 ~ 1029295 (+)
G89754 NA non-coding downstream 65955 1080132 ~ 1164388 (+)
G89764 NA non-coding downstream 114912 1129089 ~ 1146860 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 298 1008268 ~ 1011247 (+)
G89631 LOC107698159,LOC107747466 other upstream 333944 380964 ~ 677601 (+)
dlg5a dlg5a,LOC107708441,LOC107698145,LOC107678499 other upstream 634974 323731 ~ 376571 (+)
fignl1 fignl1,LOC107721231,LOC107698153,LOC107678605 other upstream 774652 190797 ~ 236893 (+)
klc1a klc1a,klc1,LOC107721224,LOC107698151,LOC107708436,LOC107678539 other upstream 828107 150439 ~ 183438 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other downstream 124982 1139159 ~ 1140195 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 327919 1342096 ~ 1345863 (+)
G89846 NA other downstream 455228 1469405 ~ 1470135 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other downstream 567181 1581358 ~ 1613330 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 826158 1840335 ~ 1842108 (+)

Expression


Co-expression Network