slf2 (LOC107690156,LOC107582525,LOC107678590,LOC107567840)


Basic Information

Item Value
gene id slf2
gene name LOC107690156,LOC107582525,LOC107678590,LOC107567840
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5040564 ~ 5054042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255946.1
CCACCTACAGATGGCGGCTTCCCACAAACACAACAGCACTTTCATCATGGAGCGTATCAAATAAATTTCTGCAATGGCTGacacaCGCCCACCTGAATGCAAACTGGATGCGTGTAGCGCAGTATAAAATGTCAAGTTTTCTCAGGCAGCACATCACCTCTATGGtgcaaGAGTTCATTCCGCTTGGTGCCCCGCGACGTGACGGTGTATCTGCCGCACCACATCCTGTGACAGGCAGTCCTCGCATTGAACCTCCTGAGAAGACTCCAAAGCTCTTGAACTCTCAGCCTAAATGCATCCCGCCCGCCAAACACCCTGAACAGGAGCAGAGGGACGAGTCCACTTCAGCCGCACTCAAGACCTCAAACAAGAGACCAGTACAGGACAATATTCTCGATTGCAAAGTTGTTGTGAGAAAACTGCAACAGAATAATGGCAACATTAACTCCAGGAAGAATGGCTCCGTCCATCCCACGGTTAAAAAGGATAAACTGCAGAGGACACTTTCTTACAACAGAAACAAAGAACTTTCTTATGCTCTCAGTAAGGAGCTGAATGAGAACTTGAGGCTTGGAGGAGGATTGTTTCAGTCAGATGCTGCGACGGTCCAGAGACATTCACTTCCTTATACATCTAACTCCAGGCGTAAGTCTGAGAGTAGTACTTCCTGCTTACTTCAGCAGAAACCTAAAGCATTACTAAACACGGGGGAGCGGATCATCCACCATCCTGATCAGAAAAAAGATGCAATGGAGAATAGAGACCACAAAACCTCCCATTGTAGCTACGTGTCCATACAAAAGGATTTAAGCACCCCTCACCACAAGACTAATCCTGAGGGCAGGATGTTTCTACCTGTAAAGAGAAAAAGGGAGAGTAGCACAGACaatgaaaaggaaatgaaaCGCCCATGTGTTGATAACCAACTCACTTCCAGTTCTTCCATCATAAACTCGCCTAAATTTGTCAAACGGGCGTTCGTGAAGTGCAGCAATGAGTCCGTAATAACTATAAAGGAGAAACTGTCCCCTAAAATGCTTCCTGCTGCACCAAACAGTGACAACAAACCCGGCCTTCTGCCTTCCTTCTCCAGCCGGTTGTTTAAACCATGTAAGGACTCAAACTCTGCAAGCGACAAACCTAACTCTTGTCAAACCAGTAAATTACACAAAGGCGCAGAGCCGAAAGATGCTATGGTGGCACATGCCAACAAAAATCCCAAAACTCCTCCCAGCCAACCACATTTGCACAAGGTCTCTCCGAAGTCGAGCACAACGTTCGACAGCATCGACACAGCGCTCTTTACGCCAGACTGTTGCCTACCATCGCCCAAAgctcataataaaaaaacgaacGCAGAGAGAGAAACTTGCACACGAACAAGTCCCTCTTCCAACCATAAGGAGAGCGTTAAAATTGTCTCGTCCCCCCATCATCCCAATCTAAGATCACCCAGCTTCACAGAGCAAGCCGGTTCTTGTAAGATGGAATCGGATGAAAGCACGCAGTTGAAAGTGGAGCAGTCACGCAGCCCCAAGGCTATCATGCCTGCCCCAGCTGTGTCGGTAAAAGTAGAAGGATCAAGAGAAAAGAAGTGCTGCCCCCAGTGGAAAGATCCCTTAGATATTGAGTTGGGAGACGACTCTGACGGTGAGCACTGCAATATCAGCctgagcagcagcagcagtcacGAAGATGAGCCGCTGCCGTCTCTGGAGAAGCTGATGAGTCGGAGAGACCATGTGCCTGTTACACCCGGAAAAGATGCTTTTTCAGAGCCCAACACGCCTGTTTCTAAAGCAGCACCCGAGGCAGTGAAAACCAAAGCCGTTAGTTATAGAAATACACTGGAGCAGATGCTGCAAGAGAAGGAGCAATATAAGAGGTCAAAAGAGTTGGAGAGACAGTTACTCGAGTCGTGTGAAGAGGATCTCCTGAGTCTAAATGAGAATGagaacagtgaaagtaaagagGAAGACATCTCACTTGAGCAAAGggaaTTTTTGCAAAGGTTCTCTGTCGCCTCATGTGCCATCAGGGACGTCCACCCAGGAGAGGAAATATTCCAGCCTGCTAGGTTTGGTCGACTCTTCAACCATCTGACGCTGGACCTAAGGAAGATTACTGTCACTCCTCATAACAAATCACAACAAATCCTCTTCCAGGCCCGTACTGAGCATGTGCTGTCTCTGATCAGTGCTGGCTTGTTGAGGAAAGcctactttttttccccttgtcaGCCGGAGGTTACACACTGGCTTTTCCAGATGATGTCAGTTTACCCAAACCCAATTATTTCCTCACACATCATGCAGTCCTTGCAAACCATTGCTCTGTCTGCTGCTCAACACATAGTTGAACACCAGAGCCAGAGTTTTAAAGTGTGGGTACCTTCGGTATGGGACATCACCCTGGTTTTCCTGAACATGGGGGCTTCGTTCATCAGTCTGTTCCCGTTGGAGGCTCTGCAACCCCCTTTTACCGAGGGAGACcttttAGAGAGCTTTCAGCCTGAAGAAACCAGCCAAGGCCGAGTGATATCTGACATGAAAAACAATTTACCAATACATAATTTGGAGAGTGTTCTCAGTTACCTCTCCTTGTGTACTGCACTGTGTCCAAAAGCGTACACTGACGAGGAGCTGCTCTTGCTTCTGACGCTGGTGTGTAGAATCGGACTGGACAGTCATTTTCAGCTCCTGCCAACTGGACACTTAAGCATCCTGCTCCAGAATCTGCTTAAAAATATCACTCACTGGGATGTACAGATATCTAAAGCTTGTCAGACCCTGACTGATTTGTCAGAAGATCATCACAACCTCAGGAGACTCGTTTATCTTCTTCCAGACAGCAGTCGTGGAAAGCAATTAAAACGACAGCTGAGTGTATCGATCATCTCAAAGCTTTTGAATCACACCTGCACTTATAAACCCTCAGGGACAGAGTTTAAGCTATCTGAACTGAAACCTTTCCTACCTCAAATGCGCCCCTCGTCCCTGCTGAAAGGCCTCAGGTCTGCAAGGAGAGCAGAAGATTGTGATGTCAGTCTAGACCAACAAGCATATTACCTCTGCTACAGCCTTTTGACTTTGACAAATGAAGCCTCcaattttgagtttttaccCTCAGCTCAGAGAAACGATCTGCAGAGTCTTTCTTCTCAGCTGGAGAAACACATTAAGTGTGACATAAGGGAGAGTGAGAAAATGCTGTATAGGAGCAAGGTGAAAGACTTGGTGGCAAGGATATACACCAAGTGGCAGGTGCTTCTAACACGAACAAGACCTCAAGAGGGAAAGCTGTATGATTACTGGAAGCCCCCACCAGAGGACGAGGTGTCCAGCTGCCCTCAAAACAAGTTGTGCATCAAATCACAAGACACCTCAGAGTGTGCAGAAGAAACCCTGACCACAGAGTGGAGCGGTGCAGAGTCAGACGAAGAAGCTGAGAGCAAAGAGGAAGAGTGTGAGGAGCCTCAGCCTCCGGAGAGTGAGGTGAAGAGCAAACAGGATgaggaagacctcagccatgaAGAGGAGAAAAAAGATCAGCCAATGCAACAGATGAAGGAACTTGAGGACGATAAAAAGTTTGAGCCAATATCTGATGAGGAGGAGTTTGATACTCATGATGACTCGGAGGCGAAGACCGAACGGGATGCTGACGATTGTGTGGAAGACATcagtgaggaagaggaggaaaaggatGAGCCCAAGCAACAGATGATGGAACTTGAGGACGATAGAAAGTTTGAACCGATATCTGACGATGAACTTTCAGAAACTCATGAAGACTCAGAGCGCGAGGAACCTCCGCCTCTGGAGAGTAAGGAGGAGACCAGACGAGACGATGAAGATTGTCCGGATGACGTcagtgaggaagaggaggaaaagaATGAGCCAAAGCAACGGATGACGGAGCTGGAGGATGATAGAAAGTTTGAACCGATATCTGACGATGAATTTCCAGAAACTCATGAAGACTCAGAGCGCGAGGAACCTCCGCCTCTGGAGAGTAAGGAGGAGATCAGCCGAGCCGATGAAGATTGTCCGGATGACGTCagtgatgaagaagaggaaaagAATGAGCCAAAGCAACGGATGACGGAGCTGGAGGATGATAGAAAGTTTGAACCGATCTCTGACGATGAGCTGTTTGACACTCACGAAGACTTGGAgtatgaggatgatgatgatctTCTGAACAGAGAGGAGGAGCTTCTGAAAGACGAAGAGCCTCATGAGAAAAAAGAGCGCATACCTGTAGAAATCACTGAGGCGTTGGAGAAACTTGAGGACTTGTTAGAGAAAAAGGAAATGATTGTTGATGAGGGTACGGAGGACTCTGAGaaagaacatatatatattctcaggtcattttgagagaattttACACCGCACCTTTGTTGCCATCCATTCATAAATACTATGTGtggttttgtgcatttgttAATCGTTACAGGATCTTTCAGTAACGTCATGCATGTAGTAtcttgtttataatatatattctgtgtatgtgttttgcATTTACCAGTTgtccttattttgtttttacaagatTCTCCGTTTTTAAGATGTAGGATCTCTTTATTGAATGTCTGGTCTTCGTTTCTCCGAAAATGAGACCATgagaacatatttttatgtcCACACATTTTGTCATCTATTGTATCATCTATACGTTAATGTGCACACTGATCGGTTTCAGGATCTACTTTTTATGCTGCTGTCTTAacgagtctttttttttttttttttttttttttttaattgccaaaAAGCTGGGGCGTctttattcagaaaatactACTCTAACAGTAAACACCAGAAGTTTTTATGTGGCTTTCAAGGATGTTTAAGCATCTCGGCAGGTCGaatatagtgtatttttattatccaTTTGTTTACAATCCAGTCttcctcaaaaacaaaaatttaaaagtgGTGTTTGTcgtaaaagtttatttaaagggtttctgtatttcttaaaagaaaagatGTGTGAGAGAAATTgctttgcttatttttatgaaaataaat

Function

NR:

description
PREDICTED: SMC5-SMC6 complex localization factor protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255946.1 True 5042 mRNA 0.45 23 5040564 5054042

Neighbor

gene id symbol gene type direction distance location
sema4ga sema4ga,LOC107690158,LOC107582524,LOC107733683,LOC107678493,LOC107708465 coding downstream 55 5008572 ~ 5040509 (-)
ninl ninl,LOC107708420,LOC107589549,LOC107699311,LOC107727377,LOC107582480,LOC107678585 coding downstream 84771 4931419 ~ 4955793 (-)
gbf1 gbf1,LOC107708418 coding downstream 136472 4837778 ~ 4904092 (-)
hells hells,LOC107727385,LOC107586490,LOC107699304,LOC107708407,LOC107678596,LOC107589556 coding downstream 368314 4626388 ~ 4672250 (-)
galm galm,LOC107586487,LOC107699302 coding downstream 429456 4607224 ~ 4611108 (-)
wdr32 wdr32,LOC107733687,LOC107582526,LOC107708468,LOC107690155,LOC107678556 coding upstream 10256 5064298 ~ 5070193 (-)
pomk pomk,LOC107733691,LOC107582561,LOC107678554,LOC107567859,LOC107708470 coding upstream 16883 5070925 ~ 5073955 (-)
zgc:123321 LOC107582562,LOC107733692,LOC107690194,LOC107678492,LOC107708471 coding upstream 22654 5076696 ~ 5079826 (-)
bbof1 LOC107690193,LOC107582564,LOC107733688 coding upstream 26406 5080448 ~ 5085525 (-)
alms1 LOC107690154,LOC107733682,LOC107582553 coding upstream 31795 5085837 ~ 5097829 (-)
G91025 NA non-coding downstream 75605 4964602 ~ 4964959 (-)
G91022 NA non-coding downstream 81153 4958383 ~ 4959411 (-)
G90846 NA non-coding downstream 207420 4829751 ~ 4833144 (-)
G90842 NA non-coding downstream 289596 4750432 ~ 4750968 (-)
G90785 NA non-coding downstream 455603 4560776 ~ 4584961 (-)
LOC122356716 NA non-coding upstream 74470 5128512 ~ 5129707 (-)
G91066 NA non-coding upstream 76309 5130351 ~ 5130949 (-)
G91085 NA non-coding upstream 207023 5261065 ~ 5262123 (-)
G91210 fgfr3,LOC107733743,LOC108263592 non-coding upstream 677214 5731256 ~ 5732678 (-)
LOC122356110 NA non-coding upstream 872951 5926993 ~ 5929491 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 260832 4690882 ~ 4779732 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other downstream 351396 4672966 ~ 4689168 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 985151 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 1084609 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 1604984 3422753 ~ 3435580 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 866460 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 1007643 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1166133 6220175 ~ 6227272 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other upstream 1304159 6358201 ~ 6396426 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 1399489 6453531 ~ 6499573 (-)

Expression


Co-expression Network