scdb (LOC107716350,LOC107707381,LOC107673932,LOC107588636,LOC107585302)


Basic Information

Item Value
gene id scdb
gene name LOC107716350,LOC107707381,LOC107673932,LOC107588636,LOC107585302
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10906055 ~ 10911829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255948.1
CGTCCACAACATAAGCATCAGATAACCAGGCAACCAATGAAACTGGTAGGGCTAGATGGCATCCTCTCAGCCTCGCCCAATTGCATCATTTTAAACGAAATCAGAGGCTTAGAGacgcaaaaaataaaaaattaaatcactcGACGGGGAACCTGCCTGCTAGCATCAATCAAATCGCGATCATTCTTTATGGTTGCATCGCAGACAAGGAGACAATAACGAGCATGAAAGAAATGGCCGAAGCGACGACGACAGAGGACGTTTATGATGATGCTTACGAGGAGAAACCGGGCCCGAGTCCTCCGGTGAAAATCGTATGGAGAAACGTTATATTAATGTCTCTTTTGCACCTAGGAGCTCTTTACGGTCTGATGATTTTTCCATCCGTCTCGTCCTTAACGCTGATATGGACGGGAGTGTGTTTCATGCTAAGCGCTCTAGGAATAACCGCCGGCGCCCATCGCCTTTGGAGCCACAGGTCTTACAAAGCCTCGCTGCCGTTACGAATCTTCCTAGCAATCGCAAACTCCATGGCTTTTCAGAATGATATCTATGAGTGGGCCAGAGACCATCGTGTCCATCACAAGTTTTCAGAGACTCATGCGGACCCACACAATGCCCGCAGAGGATTCTTCTTTGCTCACATCGGCTGGCTGCTGGTCCGCAAACACCCAGAAGTTATTGAGAAAGGACGCAAACTAGAGCTCACTGATCTAAAAGCGGATGGGGTTGTGATGTTTCAGAGGAGGCATTACAAGTTATCCGTGGTTGTGATGTGCTTTCTCATTCCCACATTTGTACCTTGGTTCTTTTGGGAAGAGAGTCTTTTGACCGGTTACTTAGTTCCTTGCCTGTTGAGATACACTGTGTGCCTTAATGCGACCTGGCTGGTCAACAGTGCAGCTCACATGTGGGGAATGAGGCCTTATGACCACAACATCAATCCCAGAGAGAACAAGTTTGTCGCCTTCAGCGCCATCGGTGAAGGATTTCACAACTATCATCACACATTCCCCCATGATTACGCTGCAAGCGAGTTTGGCAGTCGGCTGAATCTGACCAAGGCATTTATAGATCTCATGTGCTTCTTTGGACTGGCCAAGGATTGCAGGAGGGTAACTCATGAGACTATCATAGCCCGCGTTCAACGCACCGGCGATGGCAGCCACAAAAGTGGTTGATTTATTCAGTgtatatgacaaaaaaacaaagaaacaaaaaaaattataaggcAACGTATACAAAAGCATTTGCAGCATTTCTTAGTGTGCAACGAAGATTGATCTATATACACTCTCATATGAAATAAGAAACTCTAGAGTGTGTTGGACTAATATGTGTTCTTAAGAATTCTTTCCTTTTCATGACATGTTCCGGACTGCGGGAGATTATTTTCAGAGATGGTAAAGGCCATAGATTGGGAGGATAATTATATCTCAGTCTGCCTCAAGAGGCAAGAGATGGTACTTCACTAGTTTAAACAGCCATGTGCCTCATTACAGCCCTCTCTCATGAACAGGTTGACCCATGTTTTCTCTGGCTAAGCAGTTGCTGCTATGGTTCTATACAAGCTGTAAAAATAAGATGACACGCTAATAACACACTGGCactattttagattttcttaaaagataaaagctttttttccatttgaaactgggaaaaaaaattaacgaccaccaaaaaagttatttatagcaTATATAGTCAAAGAAGACTGTGCCATAGAAAAGTCCACGGGAAAACTGGTCTCAGTTGACCTAAAATGTTGACGTATATAACTCTGGTTAGTTCTGTTTAGAATAGGTTTGTTAGTAGTGACAGTATACATCAAAATACATTGCCATTattgatcaaaatatttaaaattaattttaattattatttaattttatttttagtctatATGCCTGCAAAGGTCATCAGATTAGTGACTCTTGTAATGAGGAGTGAGCAATTcatcaataaaatgaatttcttaattattattttccatgttGCATAGTGCTCTATCAAGTTTCCTTGGACTCTTGTGGTCCTGTAAAAAAAGTACCTGTCAAAATGACCAGGTAGGCCTATACggtaaacttttttaattacaaatatattgaaGTATGAAAGGATTTTTTCaagtattataaaacatatttaaccaaaaacattttgaaaaaaaatttgtcTGTTGGGGTAAAAGTGTTAAGGTGTACACTTACTAGGACATTTATTTGTCCTCATGATATAATCCAAGGATTGGAATATTCAAATGTCTTCATCAGATAGAATCTTGCCCTTTGCCTTATAAAAtaggcctctctctctctatatatatatatacagattttgGGTTGGACTCAAAATTGAAAACACAAAGATGATGTATAGCATCAgaaaaattaattcaaacttATAAAGTTTTAAGTCATTCAGGGTGGGCTGTTTTCTTGGCTCTTCTGTGACGAATGAATGACCATCTGTAGCTCcctatatttttttctcataaatgtTTGATAGGTTGATATTGGTacgcattttccaaaaaaaaaaaaagccaaatgctttatatatttaaaacccaTGTTTAAGAAGAAACACAAACTGACACTACGTTTTTCAGCttaattatttatacagtgtTGACCTTTGATGTCTGGGAGCCTTAATGGGCACATTTTCAAGGAATGTTGTTTCATGTACCATAAACCAAAATTTCTATAAGTGGAAGAGTTTTGCGAGTTGTACCGTGAGTTTTGTTATGAATCAATATTAATCTTTTtcttaattgaataaaatgtgtgtatatctgAAAA
>XM_043255949.1
GGCGTCCACAACATAAGCATCAGATAACCAGGCAACCAATGAAACTGGTAGGGCTAGATGGCATCCTCTCAGCCTCGCCCAATTGCATCATTTTAAACGAAATCAGAGGCTTAGAGacgcaaaaaataaaaaattaaatcactcGACGGGGAACCTGCCTGCTAGCATCAATCAAATCGCGATCATTCTTTATGGTTGCATCGCAGACAAGGTAAGCGCGGCGCGGAGGAGCGAACGCGGCTTTATTCCGGCGTACCTTTGAGACAGAAGTCGCGCCCATTTGTGCAGAAATTGAACGTGCTGATTGAGACAATAACGAGCATGAAAGAAATGGCCGAAGCGACGACGACAGAGGACGTTTATGATGATGCTTACGAGGAGAAACCGGGCCCGAGTCCTCCGGTGAAAATCGTATGGAGAAACGTTATATTAATGTCTCTTTTGCACCTAGGAGCTCTTTACGGTCTGATGATTTTTCCATCCGTCTCGTCCTTAACGCTGATATGGACGGGAGTGTGTTTCATGCTAAGCGCTCTAGGAATAACCGCCGGCGCCCATCGCCTTTGGAGCCACAGGTCTTACAAAGCCTCGCTGCCGTTACGAATCTTCCTAGCAATCGCAAACTCCATGGCTTTTCAGAATGATATCTATGAGTGGGCCAGAGACCATCGTGTCCATCACAAGTTTTCAGAGACTCATGCGGACCCACACAATGCCCGCAGAGGATTCTTCTTTGCTCACATCGGCTGGCTGCTGGTCCGCAAACACCCAGAAGTTATTGAGAAAGGACGCAAACTAGAGCTCACTGATCTAAAAGCGGATGGGGTTGTGATGTTTCAGAGGAGGCATTACAAGTTATCCGTGGTTGTGATGTGCTTTCTCATTCCCACATTTGTACCTTGGTTCTTTTGGGAAGAGAGTCTTTTGACCGGTTACTTAGTTCCTTGCCTGTTGAGATACACTGTGTGCCTTAATGCGACCTGGCTGGTCAACAGTGCAGCTCACATGTGGGGAATGAGGCCTTATGACCACAACATCAATCCCAGAGAGAACAAGTTTGTCGCCTTCAGCGCCATCGGTGAAGGATTTCACAACTATCATCACACATTCCCCCATGATTACGCTGCAAGCGAGTTTGGCAGTCGGCTGAATCTGACCAAGGCATTTATAGATCTCATGTGCTTCTTTGGACTGGCCAAGGATTGCAGGAGGGTAACTCATGAGACTATCATAGCCCGCGTTCAACGCACCGGCGATGGCAGCCACAAAAGTGGTTGATTTATTCAGTgtatatgacaaaaaaacaaagaaacaaaaaaaattataaggcAACGTATACAAAAGCATTTGCAGCATTTCTTAGTGTGCAACGAAGATTGATCTATATACACTCTCATATGAAATAAGAAACTCTAGAGTGTGTTGGACTAATATGTGTTCTTAAGAATTCTTTCCTTTTCATGACATGTTCCGGACTGCGGGAGATTATTTTCAGAGATGGTAAAGGCCATAGATTGGGAGGATAATTATATCTCAGTCTGCCTCAAGAGGCAAGAGATGGTACTTCACTAGTTTAAACAGCCATGTGCCTCATTACAGCCCTCTCTCATGAACAGGTTGACCCATGTTTTCTCTGGCTAAGCAGTTGCTGCTATGGTTCTATACAAGCTGTAAAAATAAGATGACACGCTAATAACACACTGGCactattttagattttcttaaaagataaaagctttttttccatttgaaactgggaaaaaaaattaacgaccaccaaaaaagttatttatagcaTATATAGTCAAAGAAGACTGTGCCATAGAAAAGTCCACGGGAAAACTGGTCTCAGTTGACCTAAAATGTTGACGTATATAACTCTGGTTAGTTCTGTTTAGAATAGGTTTGTTAGTAGTGACAGTATACATCAAAATACATTGCCATTattgatcaaaatatttaaaattaattttaattattatttaattttatttttagtctatATGCCTGCAAAGGTCATCAGATTAGTGACTCTTGTAATGAGGAGTGAGCAATTcatcaataaaatgaatttcttaattattattttccatgttGCATAGTGCTCTATCAAGTTTCCTTGGACTCTTGTGGTCCTGTAAAAAAAGTACCTGTCAAAATGACCAGGTAGGCCTATACggtaaacttttttaattacaaatatattgaaGTATGAAAGGATTTTTTCaagtattataaaacatatttaaccaaaaacattttgaaaaaaaatttgtcTGTTGGGGTAAAAGTGTTAAGGTGTACACTTACTAGGACATTTATTTGTCCTCATGATATAATCCAAGGATTGGAATATTCAAATGTCTTCATCAGATAGAATCTTGCCCTTTGCCTTATAAAAtaggcctctctctctctatatatatatatacagattttgGGTTGGACTCAAAATTGAAAACACAAAGATGATGTATAGCATCAgaaaaattaattcaaacttATAAAGTTTTAAGTCATTCAGGGTGGGCTGTTTTCTTGGCTCTTCTGTGACGAATGAATGACCATCTGTAGCTCcctatatttttttctcataaatgtTTGATAGGTTGATATTGGTacgcattttccaaaaaaaaaaaaagccaaatgctttatatatttaaaacccaTGTTTAAGAAGAAACACAAACTGACACTACGTTTTTCAGCttaattatttatacagtgtTGACCTTTGATGTCTGGGAGCCTTAATGGGCACATTTTCAAGGAATGTTGTTTCATGTACCATAAACCAAAATTTCTATAAGTGGAAGAGTTTTGCGAGTTGTACCGTGAGTTTTGTTATGAATCAATATTAATCTTTTtcttaattgaataaaatgtgtgtatatctgAAAA

Function

NR:

description
acyl-CoA desaturase-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004768 stearoyl-CoA 9-desaturase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00507 SCD, desC; stearoyl-CoA desaturase (Delta-9 desaturase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255948.1 False 2807 mRNA 0.39 6 10906055 10911827
XM_043255949.1 True 2904 mRNA 0.39 6 10906055 10911829

Neighbor

gene id symbol gene type direction distance location
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351,LOC107673931,LOC107585301 coding downstream 141 10898368 ~ 10905914 (-)
hif1an LOC107707391,LOC107585304,LOC107588638,LOC107668772,LOC107673917 coding downstream 12103 10886804 ~ 10893952 (-)
cdhr1a LOC107588642,LOC107707459,LOC107683738,LOC107585311,LOC107673943,LOC107716342 coding downstream 203958 10669026 ~ 10702097 (-)
rgra rgr,rgra,LOC107588645,LOC107585363,LOC105909826,LOC100696641 coding downstream 247146 10651830 ~ 10658909 (-)
slc18a3a slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 coding downstream 260936 10642559 ~ 10645119 (-)
trmt2b trmt2b coding upstream 1221 10913050 ~ 10914756 (-)
tysnd1 LOC107673878,LOC107716300,LOC107708039,LOC107578377 coding upstream 39622 10951451 ~ 10955143 (-)
sar1ab sar1ab,LOC107668793,LOC107708324,LOC107564344,LOC107588735,LOC107673926 coding upstream 43609 10955438 ~ 10958617 (-)
ppa1b LOC107716302,LOC107564343,LOC107673928,LOC107668792,LOC107708308,LOC107588733 coding upstream 47612 10959441 ~ 10964398 (-)
zcchc24 zcchc24,LOC107564348,LOC106577169 coding upstream 241762 11153591 ~ 11185986 (-)
LOC122356733 NA non-coding downstream 106191 10787586 ~ 10799864 (-)
LOC122356898 NA non-coding downstream 118551 10784852 ~ 10787504 (-)
G92788 NA non-coding downstream 121360 10784373 ~ 10784695 (-)
G92784 NA non-coding downstream 130556 10775195 ~ 10775499 (-)
G92779 NA non-coding downstream 143163 10762619 ~ 10762892 (-)
G92829 NA non-coding upstream 33375 10945204 ~ 10947731 (-)
G92836 LOC107668836 non-coding upstream 64704 10976533 ~ 10977459 (-)
G92839 LOC107668764,LOC107564357,LOC107716286,LOC107673889,LOC106577227,LOC107703098 non-coding upstream 74473 10986302 ~ 10986520 (-)
G92840 LOC107668764,LOC107716286,LOC107564357,LOC107564360,LOC107673889,LOC106577227 non-coding upstream 76585 10988414 ~ 10988695 (-)
G92841 rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360 non-coding upstream 77453 10989282 ~ 10993798 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 271489 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 714289 10174413 ~ 10191766 (-)
G92267 NA other downstream 1790504 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2858154 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 3089676 7809849 ~ 7816379 (-)
G92819 NA other upstream 13115 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 288723 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 613574 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 732101 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 859599 11771428 ~ 11799032 (-)

Expression


Co-expression Network