rrh (rrh,LOC107666394,LOC107585226,LOC107733708,LOC107667069)


Basic Information

Item Value
gene id rrh
gene name rrh,LOC107666394,LOC107585226,LOC107733708,LOC107667069
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5947084 ~ 5950289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255956.1
cacacagtttcatgATCTGCTTCTAGGTAAGAGAGAAGCAGTCTAGATCCTGAATTCTTTCAAGCCCCATGATTTTGTTTGAACAGATGTGAATGTTAGCCCGAGAGgtatatatatgattatgtgTGACAAAGAGATGGCATCTGGACTGAACGCTTCTACCGAGACCGTATATGGTGAAGAGAGCGCCTTCACACAGACTGAACACAACATTGTTGCTGCGTACCTCATAACTGCAGGGGTGGTCAGTCTGTCTAGTAACATTGTGGTGCTGCTGATGTTTGTGAAGTTCAGAGAGTTGCGTACCGCCACGAATGCTATCATTATCAACCTGGCTTTCACTGACGTTGGCGTAGCCGGGATTGGTTACCCCATGTCGGCAGCCTCAGACCTGCACGGGAGCTGGAAATTTGGCTACACAGGCTGTCAGATCTATGCTGCCTTGAATATATTCTTCGGGATGGCTAGTATTGGACTGCTCACCGTGGTTGCCATTGACCGATACCTCACCATATGTCGACCCGACATAGGACAGAAGCTGACAACACTATCATACACTCTTCTAATTGTGGCTGCTTGGCTGAATGCTGTGTTTTGGTCATCTATGCCCATCGTTGGTTGGGCAGGATATGCTCCGGACCCCACAGGAGCCACCTGCACCATCAACTGGAGGAACAATGACGCCTCTTTTGTGTCCTACACAATGACTGTGGTGACCGTCAACTTCATCATTCCTCTGGCTGTCATGTTCTACTGCTACTACAACGTCTCTGTTACCGTGAAGCGGTACAAAGCCAGTAACTGCCTAGACAGCATCAACATGGACTGGTCAGATCAGATGGACGTTACCAAGatgtCCATTATAATGATAGTGATGTTCCTGGCTGCCTGGTCTCCGTATTCAATCGTCTGTTTGTGGGCATCGTTCGGTGACCCCCAAAAGATTCCAGCTCCAATGGCCATAATCGCCCCACTCTTTGCCAAGTCCTCCACCTTTTACAATCCTTGCATCTACGTCATCGCCAACAAGAAGTTCAGGAGAGCCATCACTGGAATGTTACGATGTCAGACACGACAGAGAATCACTATTAGCAACCAGCTTCCAATGACGGCATCATCCGCGCCACTCAACCCCTAAACGACGAGACCaccagatatttaaatattcataaaacatcAGCGCTGGACGCTTTCTGTCTGCTCCAATGTTTAAAGTAGTGTTTAATGTTTCATAGACCTCAATTACTTTGAAGTTTCATACGAATGCTAAATGTCCTTATACCACAAATGTCCTTCCTGCAACTGATTCAGTGTAGTCCGATAGTGTTTAGTCTGATGCTTTTTACCCTTTTTATCAGTCCACCGCAAATGTTGTGAAACTGCTGTTGTTGATACTGTATTTAcgtaaaatgttttcattggaataaaaacaattacactAGAACATGCTTTATCTTGAAGATTTCTCTAGTTAAATAAAAGGCAGGAAGACGCTacatgactttttaaaacagaactGATATCACACACTTCCCGGCATCTCCTGCACAAACATCatgataaatgaaaattttgttttgaaatatttaacagGTTTGAGTCTGAagctaaaaaaattatgccTGTCATATACTATGTAATATTCAATGCAATCTATCTGCCCAAAATATGCAAGCTGACTTTCAAAACTTGCCCAAATTGAGGCAAAAATCTGTGCAAATGAAGTTATGTGGTGTATTCCAGCCCTTAgcctt

Function

symbol description
rrh Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument. Orthologous to human RRH (retinal pigment epithelium-derived rhodopsin homolog).

NR:

description
visual pigment-like receptor peropsin

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04253 RRH; visual pigment-like receptor peropsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255956.1 True 1754 mRNA 0.44 7 5947084 5950289

Neighbor

gene id symbol gene type direction distance location
lingo2b lingo2b,LOC107666555,LOC107556920,LOC107733787,LOC107747569 coding downstream 58259 5874187 ~ 5888825 (-)
c9orf72 zgc:100846,cunh9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028,LOC107585223,LOC107666374 coding downstream 78744 5861797 ~ 5868340 (-)
kiaa1109 kiaa1109,si:ch211-233a24.2,LOC107747574,LOC107733727,LOC107695027 coding downstream 85922 5808835 ~ 5861162 (-)
letm1 letm1,LOC107666480,LOC107556916,LOC107747576 coding downstream 152854 5772243 ~ 5794230 (-)
foxi2 foxi2,LOC107556908,LOC107666395,LOC107695015,LOC107747601,LOC107585287 coding downstream 320408 5623826 ~ 5626676 (-)
dapp1 dapp1,LOC107747563,LOC107667071,LOC107666557,LOC107733757,LOC107585227 coding upstream 2081 5952370 ~ 5959485 (-)
atp10d atp10d,LOC107747560,LOC107556926,LOC107666484,LOC107733756,LOC107667075,LOC107585234 coding upstream 11230 5961519 ~ 5982105 (-)
gabrb1 gabrb1,LOC107747557,LOC107666521,LOC107733746,LOC107585222,LOC107667065 coding upstream 36843 5987132 ~ 6009530 (-)
gabrg1 si:dkey-155h10.3,gabrg1,LOC107747559,LOC107666522,LOC107667066,LOC107585224,LOC107569420,LOC107733747 coding upstream 78919 6029208 ~ 6039909 (-)
gabra2a si:dkey-52k1.6,gabra2,LOC107747556,LOC107666515,LOC107569424,LOC108262858 coding upstream 94973 6045262 ~ 6059144 (-)
LOC122356110 NA non-coding downstream 17593 5926993 ~ 5929491 (-)
G91210 fgfr3,LOC107733743,LOC108263592 non-coding downstream 214406 5731256 ~ 5732678 (-)
G91085 NA non-coding downstream 684961 5261065 ~ 5262123 (-)
G91066 NA non-coding downstream 816135 5130351 ~ 5130949 (-)
LOC122356716 NA non-coding downstream 817377 5128512 ~ 5129707 (-)
G91364 NA non-coding upstream 148979 6099268 ~ 6101183 (-)
G91395 LOC107666411 non-coding upstream 233345 6183634 ~ 6183997 (-)
G91406 NA non-coding upstream 255805 6206094 ~ 6207963 (-)
G91420 NA non-coding upstream 340592 6290881 ~ 6292203 (-)
G91454 NA non-coding upstream 496209 6446498 ~ 6448426 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 20407 5920502 ~ 5926677 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 1167352 4690882 ~ 4779732 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other downstream 1257916 4672966 ~ 4689168 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 1891671 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 1991129 3951763 ~ 3955955 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 111396 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 269886 6220175 ~ 6227272 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other upstream 407912 6358201 ~ 6396426 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 503242 6453531 ~ 6499573 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1859560 7809849 ~ 7816379 (-)

Expression


Co-expression Network