drgx (drgx,LOC107588616,LOC107708289,LOC107668808,LOC107548637,LOC107673892)


Basic Information

Item Value
gene id drgx
gene name drgx,LOC107588616,LOC107708289,LOC107668808,LOC107548637,LOC107673892
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11304064 ~ 11309190 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255996.1
CGAGCGAGCGAGCGGATAGACCGAAGCGCTCAGTGATTGACGGCGGGAGTGAGATTGCTCTGCCGAGGTTGAGCCGGAGACACGAGAGTCGCGCGCGCGTAAAGACCGACGCTTTTTTTACTTTGCGTACCTCAAACCGGCCGCAGAAACGTGTtcgtttttgtctttttaagaCGCGCGCGATCGCGGTAATAGTCGGCAAAAAACCTCGCTGACTCTcgactgtttttttcttcttcttgtaaATATTCTCTCCACTCGCAAAGCACCGGGAAACATGTTTTACTTTCACTGTCCTCCACAGTTAGAAGGAGAGTGCTGCAGGACCAACACATTGAACACAAACGGGTTTGGGAATCACGCCTCTGGAGACTTTGATGACGGCTTTCTGCGCAGAAAACAACGCAGGAACAGGACGACCTTCACTTTACAACAGTTGGAGGCTTTGGAGGCGGTTTTTGCACAGACCCACTATCCAGACGTGTTCACAAGAGAAGAGCTGGCCATGAAAATCAACCTAACGGAGGCTCGCGTCCAGGTGTGGTTCCAAAACCGAAGAGCAAAGTGGAGGAAAACAGAGAGAGGAACTTCAGACCAGGAGGGAAGcaaagaacaaatgaatgacGGCACCCCTGCTGCGCGAAACCTCAACCAGTCTCCCGTTGACCACGGCAGAAATAAGAAAGAACCGATGGAACTACAGCAAAATATTAACAGAGTGGTGGGTTCAGGCGGACCTTTTTTCCCATCCTGTCTGCCTGGGACTCTGCTGAACACAGCCACTTACGCACAAGCCCTTTCACAAGTGGCAACTTTAAAAGGAAGCCCACTGTGCTCCTGCTGTGTGCCTGACCCAATGGGTCTCTCCTTCCTGCCACCATATGGGTGCCAGAGTAACCGGACAGCCAGTGTCGCAGCCCTGCGGATGAAGGCCAGGGAACATTCGGAGGCGGTGCTGCAGTCAGCCAACCTGCTGGGGGCAGGGTCTGCAGCCGGGCCCGGAGCAGGTCCAGGGGTCGTGCTGGGCCAAAGCACTGTTTCTGCAGGAGGAAGCGATTCCAGTCCTAACTCCGGTACCTCTAAGATCACATCACTACGGAGAACTCCAGACAAACATCTGCACTGCCAAAAGGAGGGACCGGATAAGAAATGAAGGAGTCTCGaatttttgttgatttatttttttcccattctgAGGACACGCTTTGGACGAAGGATTTATAATCAATCATTGAATGCCCGCTGCCTCTTTTTTGAGAGCACTGACCGGCACAGGACGGTGTTAAGTGCAATCCCTAGTTGTGTATTTTGCGTGTATgtgtcaaactattaattcaGCTGTAATTTTTCCCCTCCTCGTTCACTTTTACTCGTGATTCTTGCCATTGGTTTTCCCTCTCTGGGTGTATGTGGGCGCCTGACGCTTaattcgttttttgttttgttttttgcggCAGAATGACTTTTGAACATGCTGTGCGGTAAAAGAAAACTCCCTGGTTGCCAATGTgaacttatttaatttttcacaatCCACTTTGATGTTTGACTTGTGTACTGTGAAGTCAGGTGATGATAGACATTTTGCATTGTGTCAAGATATATGCCatgctgaaatataaatgtactaatgtgaaataatatatgtaaGATAATATCAAGGACAGAACTGTATATTAAGTGGTTTGTCATGTTTTATGATATGATCTGGGTAACTCTTATTCATGCTGATGTGATGGCAACTGACATCTCTCTTGTCATCGCATCTGTACGTCCGCGATAGACTGCAAGAGTTCAGACACTGGTCCTGTTTTGACATGTtctataaaacaattaaacatgtAGGCAATCATGTACATCTCCTGTTGCCTATTGCTCACACCATCTGGCTATGATCAATTATTAATTAGTTCACAAGCGGTAGGGCTGCAAAAATGGAAGCAATGACTggtcttattatttatttaccttaaaGTACATCTCGGCTTTCTCATACCACATAGCTATTTTA

Function

symbol description
drgx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system and trigeminal placode. Orthologous to human DRGX (dorsal root ganglia homeobox).

NR:

description
dorsal root ganglia homeobox protein

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24895 DRGX, PRRXL1; dorsal root ganglia homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255996.1 True 2011 mRNA 0.47 6 11304064 11309190

Neighbor

gene id symbol gene type direction distance location
ercc6 ercc6,LOC107588615,LOC107668807,LOC107757150,LOC107708008,LOC107673869 coding upstream 1670 11287050 ~ 11302394 (+)
cxcl18a.1 LOC107707282 coding upstream 86636 11215240 ~ 11217428 (+)
LOC122356105 LOC107588620,LOC107707271 coding upstream 88977 11213499 ~ 11215087 (+)
ppifa ppifa,LOC107668776,LOC107588732,LOC107564349,LOC107673899,LOC108442288,LOC108263515 coding upstream 151617 11149996 ~ 11152447 (+)
zmiz1a zmiz1a,LOC107588626,LOC108443181 coding upstream 157438 11033947 ~ 11146626 (+)
vstm4a vstm4a,LOC107588614,LOC107707245,LOC107673948,LOC107548636,LOC107668767 coding downstream 20087 11329277 ~ 11337428 (+)
lrrc18a NA coding downstream 42782 11351972 ~ 11355204 (+)
si:ch211-223a10.1 si:ch211-223a10.1,LOC107707219,LOC107757147,LOC107673964,LOC107548634,LOC107588731 coding downstream 69954 11379144 ~ 11388193 (+)
ptpn20 ptpn20,LOC107707196,LOC107668813,LOC107673913,LOC107757144,LOC107588696 coding downstream 117224 11426414 ~ 11454711 (+)
gdf10a gdf10a,LOC107708281,LOC107668782,LOC107588730,LOC107673887,LOC107757113 coding downstream 168018 11477208 ~ 11480996 (+)
G92767 NA non-coding upstream 100380 11202654 ~ 11203684 (+)
LOC122356274 NA non-coding upstream 282008 11004910 ~ 11022056 (+)
G92748 NA non-coding upstream 319419 10984238 ~ 10984645 (+)
G92746 NA non-coding upstream 320785 10982940 ~ 10983279 (+)
G92731 NA non-coding upstream 342368 10959420 ~ 10961696 (+)
G92907 wdfy4,LOC107707224,LOC107757102,LOC107673934 non-coding downstream 59076 11368266 ~ 11368907 (+)
G92923 NA non-coding downstream 105033 11414223 ~ 11462116 (+)
G92952 NA non-coding downstream 200048 11509238 ~ 11509888 (+)
G92958 NA non-coding downstream 205287 11514477 ~ 11533930 (+)
G92962 rrp12 non-coding downstream 209430 11518620 ~ 11519343 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other upstream 41444 11255594 ~ 11262620 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 85889 11213526 ~ 11218175 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other upstream 335150 10964855 ~ 10968914 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 883638 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 1054339 10205113 ~ 10249725 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 80195 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 262470 11571660 ~ 11592600 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other downstream 294507 11603697 ~ 11604852 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 1122729 12431919 ~ 12436643 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 1193195 12502385 ~ 12535071 (+)

Expression


Co-expression Network