tspan15 (tspan15,LOC107563042,LOC107601779,LOC107743619,LOC106612421,LOC106589828)


Basic Information

Item Value
gene id tspan15
gene name tspan15,LOC107563042,LOC107601779,LOC107743619,LOC106612421,LOC106589828
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8343096 ~ 8361457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255997.1
GCGCGTGCTCTGCTCGCTCAGGTAGAAGATACAAACAAACCAGGAAGTGTCTCCTACGCGTACGCCTTTCGTGTCATTTATacgtttaaaaaatgtcaaatgaagTGCGATATTGCGACAGGTGCTCGTACCTCTTTCTCAAGTTCTCGTTAATCGTATATGCAACCATTTTCTGGCTCATAGGGGGCTTTATTTTGGCCATCGGCATTTATGCGGAGGTGGAGAGGCAACAGTACAAAACTCTGGAAGGAGTATTCCTGGCTCCTGCCATTATCCTCATCGTGCTTGGTGTGATCATGTTCATCGTCTCCTTCATCGGTGTTCTTGCATCTCTCAGAGACAACTTGTGCCTTCTCAAAGTGTTTCTTTACATGCTGGCTCTCTGTCTCATTTTGGAGCTGGTCAGTGGGATTCTTGCTTTGATCTTTAGGAGACAGACAGAAGACCTTCTCAACAAAAACATCCGTAAAGGCATGGTCAACTACTATGATGACCTCGATTTCAAAAACATCATGGACTTTGTTCAGAAAAATttCAAATGTTGTGGGGGAAATGACTTCATGGACTGGCAGGTGAACATGTATCATAACTGCTCTGCTCCTGGTCCTCTAGCGTGTGCGGTTCCTTACACCTGTTGTCTGAGCAAGCCTTCAGAAGTTGTTAATACTTTATGTGGACACAAGGCCCTGGAAAGAGAGAGGCTACAAAATATAGATGTGATCTACACCCGTGGTTGCACCAATGCCGTCTTCATTTGGTTCATGGACAATTATAAAATCATGGCTGGACTTCTTCTGGGCATCTTAGTTCCTCAGttttttggtgtGATCTTTACCTGGCTTTATATCACCCGTGTGGAAGATGCCATCGAGGAGTATGGACACTATATGGACGGTCTGCTTGACAGCGGATCCCCAGAGACCAAGTATCAAAGCAAGTGGGCCAAATGCTGCAAATGCATGCCTTTAATTGACTGAGTGAAAACTCAGAGCCTTACATTGGAAGGAAAAAAGGGATCTATACAGGTACTATCATGTGCTGTGGATGAAACGAACCATTTGTAGCTCTGCAAAACTCAACCGCGCGTTACTTTTGTAATATCAGCCGCAGAAACACTGATGCGAGCAATTTTTGCACTGTCAATATCCTTTTCACAGTTACTCCCAGGAATCATTATTTCATCCGTCAGCTGaaaatgggtgttttttttgtgtcaagATTTACTGATGCCAGGACTGGCCTTCTTTCTCAGTACTAAATCAGATCTGAGGCAGTACACTAAGGCTGCGTCATGTTGACGGAGTCAGAATGCCTTTAGATTTTACACAGCTTAGTTGCGTTTAACAGGGAAACTGATTTGAAAATTGGCACCCTGTCGGTCTCAGGTATACAattcaggggttttttttcacattagtGAACTTCTAAATCAGTAAAAACGGCAGCTACTTTGATTATAATAACGCTGTTTCCTTTGCCACATTGTGTCTAAAATGGGCAACAGTATAAAGCCTGACTCtaacacatttaaaagctgTGTAAATCCAATCTTTTAGTTcgcaatctttttttaatttgataattgttttaattcagaTGGAGTCTGAAATGGGTTGTATCTCTTAATTTTAATGCTACATATTTCTATCCGAGAAAGTGTTTTTCCCTTTCTTGTTTGCCAAAAGGTGATGGGTTTTTATATTATCCTCTATTCTGTTGTCTGCTGTGTCTTTATTAAGCATGAACACAAGTTAACTGCATATCTTGAcctgtttttgtaataaatacgATATTTCCTGTCATTTAATGGTAGTAGAAGCATCTGatggcatatttatttaaatgcgcAAAATATTGCATTCGTATGTCATTTTGAGTGAAAGATAATTACAAACAAGCAGGGTGAAgtgaataataacatttaagccttaactctttttttttcagtttttcaatgACTATATCTTGATCTGACTGTTAAAGCTGAGTATTGCCCTGAACACAGTGAGCGTCctgctgaatgaatgaataaatgatgtttaCAGA
>XM_043255998.1
GGAGCGCGTGCTCTGCTCGCTCAGGTAGAAGATACAAACAAACCAGGAAGTGTCTCCTACGCGTACGCCTTTCGTGTCATTTATacgtttaaaaaatgtcaaatgaagTGCGATATTGCGACAGGTGCTCGTACCTCTTTCTCAAGTTCTCGTTAATCGTATATGCAACCATTTTCTGGCTCATAGGGGGCTTTATTTTGGCCATCGGCATTTATGCGGAGGTGGAGAGGCAACAGTACAAAACTCTGGAAGGAGTATTCCTGGCTCCTGCCATTATCCTCATCGTGCTTGGTGTGATCATGTTCATCGTCTCCTTCATCGGTGTTCTTGCATCTCTCAGAGACAACTTGTGCCTTCTCAAAGTGttCAAATGTTGTGGGGGAAATGACTTCATGGACTGGCAGGTGAACATGTATCATAACTGCTCTGCTCCTGGTCCTCTAGCGTGTGCGGTTCCTTACACCTGTTGTCTGAGCAAGCCTTCAGAAGTTGTTAATACTTTATGTGGACACAAGGCCCTGGAAAGAGAGAGGCTACAAAATATAGATGTGATCTACACCCGTGGTTGCACCAATGCCGTCTTCATTTGGTTCATGGACAATTATAAAATCATGGCTGGACTTCTTCTGGGCATCTTAGTTCCTCAGttttttggtgtGATCTTTACCTGGCTTTATATCACCCGTGTGGAAGATGCCATCGAGGAGTATGGACACTATATGGACGGTCTGCTTGACAGCGGATCCCCAGAGACCAAGTATCAAAGCAAGTGGGCCAAATGCTGCAAATGCATGCCTTTAATTGACTGAGTGAAAACTCAGAGCCTTACATTGGAAGGAAAAAAGGGATCTATACAGGTACTATCATGTGCTGTGGATGAAACGAACCATTTGTAGCTCTGCAAAACTCAACCGCGCGTTACTTTTGTAATATCAGCCGCAGAAACACTGATGCGAGCAATTTTTGCACTGTCAATATCCTTTTCACAGTTACTCCCAGGAATCATTATTTCATCCGTCAGCTGaaaatgggtgttttttttgtgtcaagATTTACTGATGCCAGGACTGGCCTTCTTTCTCAGTACTAAATCAGATCTGAGGCAGTACACTAAGGCTGCGTCATGTTGACGGAGTCAGAATGCCTTTAGATTTTACACAGCTTAGTTGCGTTTAACAGGGAAACTGATTTGAAAATTGGCACCCTGTCGGTCTCAGGTATACAattcaggggttttttttcacattagtGAACTTCTAAATCAGTAAAAACGGCAGCTACTTTGATTATAATAACGCTGTTTCCTTTGCCACATTGTGTCTAAAATGGGCAACAGTATAAAGCCTGACTCtaacacatttaaaagctgTGTAAATCCAATCTTTTAGTTcgcaatctttttttaatttgataattgttttaattcagaTGGAGTCTGAAATGGGTTGTATCTCTTAATTTTAATGCTACATATTTCTATCCGAGAAAGTGTTTTTCCCTTTCTTGTTTGCCAAAAGGTGATGGGTTTTTATATTATCCTCTATTCTGTTGTCTGCTGTGTCTTTATTAAGCATGAACACAAGTTAACTGCATATCTTGAcctgtttttgtaataaatacgATATTTCCTGTCATTTAATGGTAGTAGAAGCATCTGatggcatatttatttaaatgcgcAAAATATTGCATTCGTATGTCATTTTGAGTGAAAGATAATTACAAACAAGCAGGGTGAAgtgaataataacatttaagccttaactctttttttttcagtttttcaatgACTATATCTTGATCTGACTGTTAAAGCTGAGTATTGCCCTGAACACAGTGAGCGTCctgctgaatgaatgaataaatgatgtttaCAGA

Function

symbol description
tspan15 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN15 (tetraspanin 15).

NR:

description
tetraspanin-15-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17297 TSPAN15; tetraspanin-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255997.1 True 2046 mRNA 0.40 8 8343096 8361454
XM_043255998.1 False 1878 mRNA 0.40 6 8343096 8361457

Neighbor

gene id symbol gene type direction distance location
rufy2 rufy2,LOC107725492,LOC107743555,LOC107563060,LOC107676589 coding downstream 6060 8324645 ~ 8337036 (-)
LOC122356684 LOC107666548,LOC107743620,LOC107676590,LOC107563041,LOC107601825,LOC107725441,LOC107601828 coding downstream 24281 8315189 ~ 8318815 (-)
LOC122356681 LOC107743620,LOC107666548,LOC107676590,LOC107563041,LOC107725441,LOC107601825,LOC107601828 coding downstream 28272 8309437 ~ 8314824 (-)
LOC122356683 LOC107666548,LOC107743620,LOC107676590,LOC107563041,LOC107601825,LOC107725441,LOC107601828 coding downstream 34447 8306483 ~ 8308649 (-)
LOC122356685 pbldp,pbld,LOC107676590,LOC107743620,LOC107563041,LOC107666548,LOC107601825,LOC107725441,LOC107601828 coding downstream 37248 8303493 ~ 8305848 (-)
hk1 hk1,LOC107676584,LOC107725457,LOC107666459,LOC107743551 coding upstream 7480 8368937 ~ 8381953 (-)
hkdc1 hkdc1,LOC107743550,LOC107725456,LOC107676583,LOC103047009 coding upstream 25589 8387046 ~ 8396309 (-)
supv3l1 supv3l1,LOC107725491,LOC107601833,LOC107666535,LOC107743553,LOC107676608,LOC107563062 coding upstream 35422 8396879 ~ 8402518 (-)
vps26a vps26a,LOC107676600,LOC107666532 coding upstream 41711 8403168 ~ 8408645 (-)
srgn LOC107601835,LOC107725442,LOC107666570 coding upstream 48551 8410008 ~ 8413812 (-)
G91916 NA non-coding downstream 75023 8267766 ~ 8268073 (-)
G91891 NA non-coding downstream 120481 8168737 ~ 8222615 (-)
G91889 NA non-coding downstream 175164 8157258 ~ 8167932 (-)
G91796 NA non-coding downstream 211248 8131243 ~ 8131848 (-)
G91769 NA non-coding downstream 301878 7997680 ~ 8041218 (-)
G91960 NA non-coding upstream 73569 8435026 ~ 8435920 (-)
G91967 LOC107743599,LOC107601782,LOC107725459,LOC107666363 non-coding upstream 103624 8465081 ~ 8468983 (-)
G91968 NA non-coding upstream 107815 8469272 ~ 8471302 (-)
G92004 NA non-coding upstream 229901 8591358 ~ 8592574 (-)
G92021 pcnxl2,LOC107725461,LOC107601842,LOC107666362,LOC107743596,LOC107676602 non-coding upstream 306039 8667496 ~ 8678386 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 295195 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 526717 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 1843523 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 1946670 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 2115824 6220175 ~ 6227272 (-)
G92267 NA other upstream 753636 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1812956 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 2270793 10632250 ~ 10634566 (-)
G92819 NA other upstream 2563487 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2839095 11200552 ~ 11218985 (-)

Expression


Co-expression Network