pla2g12b (pla2g12b,LOC107702679,LOC107551354,LOC107564523,LOC107660215)


Basic Information

Item Value
gene id pla2g12b
gene name pla2g12b,LOC107702679,LOC107551354,LOC107564523,LOC107660215
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23324782 ~ 23329933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256000.1
AGGCACTATCAACAGAGGCTGTGTGTGCTGTTCACTCTTTTCTATCTAAGCCCTTCGGCTTTATCGGTCTCTCCTTCTTCTTGGACCCTACAGACCTCCCGGGACCCGGGGCCAAATCATGTTTCCTCGTGTGCTTCCTCTGCTGCTGCTCTGTATCTCCACAGGCTTGGCTGCCACGCTCATCCAGGCCTCTGCTGATGCAGCTGCGGTGGATTCTCCAGCTGACGGCTCCGTTCTGCCTGAAGCTCAGGCTGGTGAAACCCCAGATGACATCCTGATGGCAGATGCCCCTGTTGAGAGACAACCTGCAGAGACCCAGAGCTCCACGCAAGAATCTGAAGATGATTCAAGCTGGGGCTTGGGTTCTATCAGAGGGAGTTTCCAGGCAGTCAATGGCTATTTTGACTCTATACTGGAGGTGATGGGGGGTCGAGACGGTGTATGCCAGTACCGCTGTAGATATGGTAAAGCTCCTCAACCTCGTCCTGGATATCAAATGCCCGAGCCTGACGGTTGTAGCACCTCGTTGCTGGGCTTCCAGGTACCTAACAGTTTTGATATGGGCGTCCCAGCCATGACCAAATGTTGTAATCAGCTAGACATTTGCTATGACACCTGTGGTTCTAACAAATACCGCTGTGACACCAAATTCCGCTGGTGCCTCCATAGCATCTGCGGTGACCTGAAGAAGAGTCTGGGCCTCATAGCAAAAGTTGAAgCCTGTGAGACCTTTGCGGACACCATGTATAACACCGTGTGGACTTTGGGCTGCAGGCCCTTCATGAATGGCCAGAGGGCATCCTGCTATTGTGAAGGAGAAGAGAAGGACGAGCTGTGAAGATCTacaaaccacaaaaacacaccaccttaaacacatataaacactTTTGTAGTTTAAACTACTCCGCACTAGGGCTCAGTATTAGGATGAAGTAAGACACCCTGGTCACATTTCACCACATTGAAAAAGAAACTGTTAGAAAGATTTACCGCAGTGTACAACGGTGGTGGTTGTTGTTGGATTCTCATTAGTTAatatagttaatttatttatcatcattatttttatttgaaataattgtaattgttatCAGCATACGTTAAATGCTGTAAATGACCTACTACTGCAATGTATAAATACTATTGATTTACatttactaatttaaataaaatatttatttgctttgcagcaaaagttttttttaaataaacattttgcataaatagTCTGATCTTCCTAAAAATGTCACAAAGATTCACCCACTAACTCTCAAACTGGTGCTAGTGAATTTGTTTTAGTTCAGCAGAAACTTAAGGTTTACTCTGTATGTGTGAAAGTGTCATATTATGATTTGGGTAGTgatatttatgcaaataatgATTGTCTGAATATCACGTTCTGAAAACTCAAACGTTCTCCTAAGCAAGTAGTTTTATTggattttgtttgaaatgtaattatatgCAGAATAGAAGGTAAACAGTAATACACATGAATATGTATttcactgagagagagacaacatGACTACAGACTGTgacaaaaataactgtattggctgtaaaataattttattctacTCAGTAAAACAGTGCTGAGATTATACagaaattaagcattttaaaactgtataatGCTGCTCAGTTTCTTGATCTAAGCTTTTTTGAAACACCTAGAGGCTTTAtgtagtaaatatatatgtcaGAAGTATTGGAAGGAAGCAACTGTtgcaaattataaatgtaagatTCCTGCAGATACTGTATGCAGAATGGATgtgtttaaatacaataaagtagCCTGTAGATGGCGTTGTGGGTAGGA
>XM_043256001.1
GGCACTATCAACAGAGGCTGTGTGTGCTGTTCACTCTTTTCTATCTAAGCCCTTCGGCTTTATCGGTCTCTCCTTCTTCTTGGACCCTACAGACCTCCCGGGACCCGGGGCCAAATCATGTTTCCTCGTGTGCTTCCTCTGCTGCTGCTCTGTATCTCCACAGGCTTGGCTGCCACGCTCATCCAGGCCTCTGCTGATGCAGCTGCGGTGGATTCTCCAGCTGACGGCTCCGTTCTGCCTGAAGCTCAGGCTGGTGAAACCCCAGATGACATCCTGATGGCAGATGCCCCTGTTGAGAGACAACCTGCAGAGACCCAGAGCTCCACGCAAGAATCTGAAGATGATTCAAGCTGGGGCTTGGGTTCTATCAGAGGGAGTTTCCAGGCAGTCAATGGCTATTTTGACTCTATACTGGAGGTGATGGGGGGTCGAGACGGTGTATGCCAGTACCGCTGTAGATATGGTAAAGCTCCTCAACCTCGTCCTGGATATCAAATGCCCGAGCCTGACGGTTGTAGCACCTCGTTGCTGGGCTTCCAGTTTGATATGGGCGTCCCAGCCATGACCAAATGTTGTAATCAGCTAGACATTTGCTATGACACCTGTGGTTCTAACAAATACCGCTGTGACACCAAATTCCGCTGGTGCCTCCATAGCATCTGCGGTGACCTGAAGAAGAGTCTGGGCCTCATAGCAAAAGTTGAAgCCTGTGAGACCTTTGCGGACACCATGTATAACACCGTGTGGACTTTGGGCTGCAGGCCCTTCATGAATGGCCAGAGGGCATCCTGCTATTGTGAAGGAGAAGAGAAGGACGAGCTGTGAAGATCTacaaaccacaaaaacacaccaccttaaacacatataaacactTTTGTAGTTTAAACTACTCCGCACTAGGGCTCAGTATTAGGATGAAGTAAGACACCCTGGTCACATTTCACCACATTGAAAAAGAAACTGTTAGAAAGATTTACCGCAGTGTACAACGGTGGTGGTTGTTGTTGGATTCTCATTAGTTAatatagttaatttatttatcatcattatttttatttgaaataattgtaattgttatCAGCATACGTTAAATGCTGTAAATGACCTACTACTGCAATGTATAAATACTATTGATTTACatttactaatttaaataaaatatttatttgctttgcagcaaaagttttttttaaataaacattttgcataaatagTCTGATCTTCCTAAAAATGTCACAAAGATTCACCCACTAACTCTCAAACTGGTGCTAGTGAATTTGTTTTAGTTCAGCAGAAACTTAAGGTTTACTCTGTATGTGTGAAAGTGTCATATTATGATTTGGGTAGTgatatttatgcaaataatgATTGTCTGAATATCACGTTCTGAAAACTCAAACGTTCTCCTAAGCAAGTAGTTTTATTggattttgtttgaaatgtaattatatgCAGAATAGAAGGTAAACAGTAATACACATGAATATGTATttcactgagagagagacaacatGACTACAGACTGTgacaaaaataactgtattggctgtaaaataattttattctacTCAGTAAAACAGTGCTGAGATTATACagaaattaagcattttaaaactgtataatGCTGCTCAGTTTCTTGATCTAAGCTTTTTTGAAACACCTAGAGGCTTTAtgtagtaaatatatatgtcaGAAGTATTGGAAGGAAGCAACTGTtgcaaattataaatgtaagatTCCTGCAGATACTGTATGCAGAATGGATgtgtttaaatacaataaagtagCCTGTAGATGGCGTTGTGGGTAGGA

Function

symbol description
pla2g12b Predicted to enable calcium ion binding activity and phospholipase A2 activity. Predicted to be involved in cholesterol homeostasis and triglyceride homeostasis. Predicted to act upstream of or within arachidonic acid secretion; lipid catabolic process; and phospholipid metabolic process. Predicted to be located in extracellular region. Is expressed in caudal fin skeleton and yolk syncytial layer. Orthologous to human PLA2G12B (phospholipase A2 group XIIB).

NR:

description
uncharacterized protein LOC110491268

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256000.1 True 1825 mRNA 0.41 4 23324782 23329933
XM_043256001.1 False 1812 mRNA 0.41 4 23324782 23329932

Neighbor

gene id symbol gene type direction distance location
micu1 micu1,LOC107702683,LOC107754762,LOC107717828,LOC107660220 coding downstream 86265 23183915 ~ 23238517 (-)
mrps6 LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615 coding downstream 155879 23167873 ~ 23168903 (-)
LOC122356317 psap,LOC107575616 coding downstream 157691 23157102 ~ 23167091 (-)
c1d c1d,LOC107551342,LOC107754748,LOC107717833,LOC107702672,LOC107660245 coding downstream 188140 23134818 ~ 23136642 (-)
LOC122356266 LOC107671403,LOC107756883,LOC107688264,LOC107592480,LOC107592170 coding downstream 505325 22802718 ~ 22819457 (-)
pde10a pde10a,LOC107754764,LOC107717825,LOC107564529 coding upstream 2887 23332820 ~ 23416851 (-)
tbxtb tb,t,LOC107717823,LOC107660241,LOC107564521,LOC107702670,LOC107572025,LOC107750753 coding upstream 95099 23425032 ~ 23429064 (-)
prr18 prr18,LOC107750748,LOC107702669,LOC107717824,LOC107660240,LOC107564522 coding upstream 114246 23444179 ~ 23446166 (-)
sft2d1 sft2d1,LOC107660214,LOC102776618 coding upstream 117400 23447333 ~ 23464851 (-)
rps6ka2 rps6ka2,LOC107750746,LOC107717821,LOC107702677 coding upstream 135856 23465789 ~ 23505692 (-)
G96117 NA non-coding downstream 146686 23176802 ~ 23178096 (-)
G96108 NA non-coding downstream 170287 23152205 ~ 23154495 (-)
G96061 NA non-coding downstream 294882 23017198 ~ 23029900 (-)
G96060 NA non-coding downstream 317319 23006279 ~ 23007463 (-)
G96044 NA non-coding downstream 490370 22833829 ~ 22834412 (-)
G96254 myom2,LOC107566060,LOC107660212,LOC107702662,LOC107717844,LOC107572023 non-coding upstream 208845 23538778 ~ 23542300 (-)
G96265 NA non-coding upstream 597398 23927331 ~ 23928060 (-)
G96279 NA non-coding upstream 712595 24042528 ~ 24067735 (-)
G96286 NA non-coding upstream 740227 24070160 ~ 24070488 (-)
G96295 NA non-coding upstream 777500 24107433 ~ 24107818 (-)
G96053 NA other downstream 329183 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 501523 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 876771 22371567 ~ 22448011 (-)
G95972 NA other downstream 901913 22420936 ~ 22422869 (-)
ypel5 ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471 other downstream 995490 22326705 ~ 22329292 (-)
si:ch211-130h14.4 LOC107660236 other upstream 99713 23429646 ~ 23444063 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 1012816 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 1069190 24399123 ~ 24404715 (-)

Expression


Co-expression Network