sprn (sprn)


Basic Information

Item Value
gene id sprn
gene name sprn
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 7806576 ~ 7809315 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256017.1
CTGATGACTACACCTGCCATGTTTTAATTCATCTCCAGCAGCAGCGCGCATTACGAGCAGTGCCGCCTTACATAACgcctgcatttttatttgatctcaCACATGATAGTGAGACGTCGCGGGATATTCTGCGGACACGGACGCTATCGGAGGGTGATCCAGAATGAACAGGGCTGTTGCCACCTGCTGGATATTTCTCCTGCTTTCGGCATTCCTGTGCGATCAGGTGATATCCAAAGGTGGCAGGGGAGGAGCCAGGGGTTCAGCACGGGGCAGCGCTCGAGGAGGCCGGACGTCCCGCACCCGTGGCTCCCCCGCTGTGAGGGTGGCAGGGGCGGCGGCGGCCGGGGCTGCGGTGGCGCTGGGAGCCGGAGGGTGGTACGCGTCGGCCCAGCGTCGACCGGATGACAGCTCGGAGCATGGAGATGATTCCTACAGTAACAGAACAGACTGGGAGCTCTACCTCTCCAGGACATCAAACGCAATAGCGCACGACTCCGCTGCCACTAGATTTTCTGCCTTGCTCTTACCAATAAACTTTGTGATGTACTTTGCCCCTTGATGCGGTTTAAGACGGTTTGGCACAGCTTAATAAGCTGCTCATGTATGTTACTGTGCAACACCGATGTTTAATAATGTGTACTTTATTGCACAACAAAGCAGATACGAAGATGAAAGGAGGATTTAAAACATCTCTATTTAGTTTAGTAGACATATAGGTTCTGAAAGGTTAGTTTGCTTCAACAGAAGCATTAGTATCTATACAACTATAGACTACTTAAATTATGCTGGTCACATCATGTACTGGATGGCAAAAATACTGTGTTATTGTTGTGCTGCTGCACTGTTGGTAAAACTCCACTGTTCTTGACATTCGCGTAAACCTTTTTTATATGAACCTTTGTATGttcaataatatttatgttcaCGTTTAACTAATAAGTGTATGTAGATCGAAGAGGTATGCTGTAACACATTTAGAATTAGAAAACAGTATTTCTAGCTGTACCCGTACTCCCCATTGCTTCCGGTGTGAAAATGTCCTCTTTCtacatcatttataaatgacttgatgtatttaaacaattttgtatTTCCAGTAGAGATTTTTGATAACCCACGAAAAATGTGAATGCGGTGTGTATTAAGTGCACAGgtgttttaagaaattaaagaggttttatttatatacgtGTTAA

Function

symbol description
sprn Predicted to be located in plasma membrane. Predicted to be anchored component of membrane.

NR:

description
PREDICTED: shadow of prion protein isoform X1

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256017.1 True 1199 mRNA 0.45 2 7806576 7809315

Neighbor

gene id symbol gene type direction distance location
elovl6l elovl6l,LOC107565931,LOC107713892,LOC107743581,LOC107696872,LOC107666569,LOC107555311 coding downstream 4398 7798510 ~ 7802178 (-)
mxtx1 LOC107713888,LOC107565925,LOC107666529,LOC107696871,LOC107743578,LOC107555317 coding downstream 10975 7793836 ~ 7795601 (-)
tspan14 tspan14,LOC107743579,LOC107666530,LOC107713891,LOC107696876 coding downstream 15712 7783638 ~ 7790864 (-)
si:ch1073-126c3.2 LOC107557970,LOC107666573,LOC107711424 coding downstream 431414 7372444 ~ 7375162 (-)
gfra1a gfra1a,LOC107666504,LOC107568111,LOC108442611,LOC108263696,LOC106577126,LOC107711414 coding downstream 444566 7301181 ~ 7362010 (-)
si:dkey-191g9.5 si:dkey-191g9.5,LOC107666514,LOC107565930,LOC107713893,LOC107743575,LOC107696877,LOC108438182 coding upstream 9428 7818743 ~ 7829212 (-)
mmrn2a LOC107666404,LOC107706028,LOC107696890,LOC107743562,LOC107563047,LOC107601778 coding upstream 381044 8190359 ~ 8215972 (-)
glud1a glud1a,glud1,LOC107725450,LOC107563055,LOC107743560,LOC107601820,LOC107666407,LOC103026661 coding upstream 416083 8225398 ~ 8235698 (-)
psda si:ch211-150i13.1,LOC107725451,LOC107743558,LOC107696897,LOC107563050,LOC107601823 coding upstream 447073 8256388 ~ 8287519 (-)
LOC122356679 NA coding upstream 478224 8287539 ~ 8291145 (-)
LOC122356287 NA non-coding downstream 761001 7017223 ~ 7045575 (-)
G91574 eif3a,LOC107666466 non-coding downstream 926682 6879222 ~ 6879894 (-)
G91513 NA non-coding downstream 1018969 6787267 ~ 6787607 (-)
LOC122357105 NA non-coding downstream 1102653 6693662 ~ 6703923 (-)
G91490 NA non-coding downstream 1119281 6687077 ~ 6687295 (-)
G91758 NA non-coding upstream 169505 7978820 ~ 7980706 (-)
G91760 NA non-coding upstream 174631 7983946 ~ 7984316 (-)
G91769 NA non-coding upstream 188365 7997680 ~ 8041218 (-)
G91796 NA non-coding upstream 321928 8131243 ~ 8131848 (-)
G91889 NA non-coding upstream 347943 8157258 ~ 8167932 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 1307003 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 1410150 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 1579304 6220175 ~ 6227272 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 1733379 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 1879899 5920502 ~ 5926677 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 534 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 234250 8043565 ~ 8047901 (-)
G92267 NA other upstream 1305778 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 2365098 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 2822935 10632250 ~ 10634566 (-)

Expression


Co-expression Network