si:dkey-51a16.9 (si:dkey-51a16.9,LOC107559326,LOC107655434,LOC107743509,LOC107601881,LOC107666536,LOC108426796)


Basic Information

Item Value
gene id si:dkey-51a16.9
gene name si:dkey-51a16.9,LOC107559326,LOC107655434,LOC107743509,LOC107601881,LOC107666536,LOC108426796
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9422476 ~ 9428137 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256019.1
GTTTTCCCTCTGCAGTCCCCTGCTGTTTTGGTGTCTGCCAGTCAAGCAAAGTGAATCGACCCTCATTCCCCTCCCAGCCTTGTCTTACACGGACTCGTCAGGGAGAGTCTGACTCGGCCTGCCTGTCTGCTCGCCTGGCCACTGTCACCTCCTAATAGCCTTCAGCTGGAGAGAAGtaggatgaagagagagagcacaGGATAGAAAGGGAGAGGGGGAGAGCGAGGAGGGGGCGGGTGAAAGGAGAGCTGTGATCCAGACAGCGAATCACATGAGCAGAGATCTGTTTACAAACTGAGCAGGAGAGAAGTCATCGGCACCATTACGTGGAGGCACGGCTGCTGAAAAAAGGCGACAGGAAACACACAGGAATCTCATCACTTTGtctggaaaatgtattttatcctTTGTGTCTTTTCAGCGGTGAAGCCAGACCAGATGGTGTGAGGAAGACATAGCTTTGAATGGGCTGCACTgacaagctctctctctctctctgacggCTGTGTGCCACcgctcttcctcttcctttgtTACCAGGGAAAACGCTTGATTGTAACGCGAGGGTGATAATCTTGAGCGAGAAGACTAGAGGAAAGTGGCTGACGGCGAGGAGGGGTGAGCCTTGTGACAATGTTTTGAAGATAGACAAAGAAATCTGTGACTCTCTTTAACGTacattgtctctctctctcgctgtttTGTTATCGTGACTCTACagagaggtaaaaaaaaaaaaaaaaatgaaaaaagccaATGACAACTACTTCACGTCAAGAGGAAGGTAGACGGTGGTCCGTTGTCGATGTCGAAGACACGTTGCAAATTTTCATATTCCGTGCCGCCGCTTGGTTTTGGATCATGAAGCTGGAAAAAAAGAGCTCGTTTTGTTCTTTTAACTTGCCTGCGGTcgaacaaaacattttagaaaccgAGAAGTAGGTGTTGATATTTGTTCCTGTGTTGACACAGGTTTCAGTAATGACTGACCTGGCTTTGTAAATGTTtcaacacaaagaaaacagaatcaCCCAGCCTTCCTCCATACACCAGTGAGGAGCTGGTGGGTGATCGTAATGTGTTAACCAGAGGCGCTGAAGATTCAAAGCCCTGTTTTTGTGGTAGGAGTTTTTGGAGTGTAAAACTTGTATTATTCATCTGGTTTTGAGTGAGGGGATCAGCCCACTCCTTTGGCCCGGTTTCAACACTGTCTCCTTGGACACAAGTTACTGGATCGTTTGCTATAGCGGAGCAATCTAGCACCTATCCAGTGGTGTAACGCATGTCTATGTGACGCAGATTAAAGAGAAATTCTGCAAAATGACCACAGACATCAGCGGCCGTCTTCCACTCAATGTCTATGTCATCATTCTTGGGATTGGtctcttcatcttcatgttGAGCATGATCTTCTGTTGCTACCTGTTCAGacTGAGGCGACAGGGCACACAAGAACAATATGGATATAATgaggtCATTCTAAAAGGTCCAGGGAAAAAGTTGAGCCTTCTTGGACAGACCTGTGCAGTTTGCCTGGAAGAGTTTCGGAGCCGGGATGAACTAGGAGTGTGCCCCTGTTCTCACGCATTTCACAAGAAGTGTCTGGTGAAGTGGCTGGAAATTCGTAGCGTCTGCCCCATGTGCAACAAGCCCATCTGCAGGCTCCAGCCAGATCCCCCGCAGGGGGCCGAGGGGCCCCAGAACCCCCTGGAGGTGTGACAGAAGAGATAGACAGGCTTTCACACACCTAAGAACAGCGTTAAAAAACACCAGGGCGGACGGACTAGTCCCTAATTCACAACAAACCGCCCCTGTCCACCAATCACCAGATTTCTCCTGCATAGATGGGGGGAGGGAGGGGAAGCGGGATTTTCCCAGTGCGACTGAACTGATGTGCCGTGTGTTCTTGGTCATAATGTAGCTTGCAGCACGATAAATTGATGCCTTGTGGACTCCAAACACTGGAGACAAACAAATATTCAGACCAGGACGGTTGCACAGAAACATGAGGTCTGAGTTGACACTGTGCAATGTGTGTGAATTTACAGAAGTCCTCCTCTAAGAGAGACTGCGGTcactattattactataaagAGTCATGTTTAGGAAGGCCCAGTTACAGAATGCAAAGTGAGGGAGCAGCTCAGAGTCTTGACCGTAAGGATCAGGGAGCTCATGGGATTTAACTCTTGCCAATACTTTGACGTTTGACActcataaatgtgtttgtttggagTCACGGAGGTGTTCTGAGTGCTAAAGGGAGCTCATGGTCTCGATGAGAACCCATTAAGGGATGCAGGAGCCTCAGAGCCAGATTGGATGAAATTTGGTCTAATTTAAATTAAGGTGGATGTTTTGTACTGTACATTGctcttaataaaatgtaaagtttctGTGATGGAA
>XM_043256020.1
ATGAATCATaaccccctcctcctcctcctcctcctcctcctcctcatccctTCATTTCTAGCGGCTACATAATCTGGAGAGCTCCATAACCATGTGTTATTCACAGAGCCCCCAACCCTTCCACTGGCTTTCTATCAATGTTTAACTAAAATCCTCCTTATATTACATCCACCCCCTCCTTCACCTGAAAACCCAAGCCTTTTTACCTTTCTCCTGATTGGCACACTCTCTTCCGAGACTTGAACTTGCGCGCAGCCAAGAGAGACACGCTATGTGTCTTTATCTATTGTGTGAGGCACAATATTGTGTTGTTGTTTGGCAGCGTTCGACCCTGAGGTCACTTATTATTGTTTTCCCCCCAAATGGTGCTTCCTGCCTGGGTTGGTGAGGCCTTCACATGTCTTGCCTCCCCCTGAACTCCTCATAGAAAGACCAGATGGTGGCTTTATGGCAGAAAGGGTGCACCACTAGTGTTTGTCTTTCTGCTCAGACAATTGGCCAGGCTTCACTCTCGTTGCCAAacgctttttttcccctttttttgaaaatgcaaatctGTATACAGTAAGAAAATTAAGATaacagaatgagaaaataagatgctaaattaaaatatcacttgcgtttaaaagatttaaattctTAAACAGTATTAAGAACACTAAATGATTGTTAACCTGTTTACATTGTCATGCTATTAGGAACTACTGGCCCTCcaagcatcatttatttttgttttcagttgttgATTGATATAGCTTCGTTTTAGCTATAAATATGTGTCAAAATGTCAATGTTtcaaaaatgatcttttttaaCCATACTGAAGAGCATATGCATCTACTGCACCTGTgcgtatacatatataagcatatatctaaaataaatgtaatttgtttttttgtagccAAGCATAACAGTATTCTTTTCAACTGCTGTTGCACTTCGGCACAAAGGAACGTTTCTTGTCTGCTTTTGTTTCAGTCGGCAAGCACAGTGCACTGAAGTGTGGATGTCTATTCTTTATGCTAAGTGTTTGGATCTATGGCAGTTTGAAAAGACTTACCAACATGCctctgaaaacatttatattttgtcagAGGGCCCAGAGCACTATTCGTTCTACCGTTCATTTTGGATTCTAAGATGACCGTTTCACTCCCAGATACAACTAAAAGCCTTGTAGCACCATGCTGGTTTTGTGTTGCTATTTACATGTATTGCCTTAAGATATAGGTTAAACCATTGTTGTCTAAATAATGTTCACTGCTCTGGAAACTCTCCAATGTGTGTTGAAATAGCTTGAACCCCAAAGTCAACATGATACACTTAACAAGGACTTTTGGAGGACTTCTACAAGACTCgattaagtaaataaacagcGAGCTAGCTAGCTTAATAGAAAAACGCAGGTATTCCATCACAACAAAGACAAAGATATAGTATGGTCTAGCATCAAATGTCCTGCAATAAACTACATGAAATTGTTGTATTGTATACGTGCACATTAACAGCCACATTTCGCCGCGTTTTAACAGTTACATTGCAATCTATTACCAAGCTGtacaataaatactaataaatttTGAAAGATAAGCTCTTGCACTTATCTGTTGAACACATCATCCGACACCACTGTGACATctcttgtttttcagttttaaaagatGTATTACAGTGAAAAGTTCACGCTGCTCAGCGAGGTCCAACAATGAGAGCAGTGTTACACGGAGTTGAGAAACACGAGGACAGTCCGCAGGCTCACAGTATGCAATATGCATGCAAGGGCCACCGAGAAGCGTACACATGAGAATCACAGTGATGTGTGCTGTCTTTCAAGGGTCTGACAAAAAGAAATATGCAGCCCACTTGCATGGAGATATCATAATCATGTCTATGTGACGCAGATTAAAGAGAAATTCTGCAAAATGACCACAGACATCAGCGGCCGTCTTCCACTCAATGTCTATGTCATCATTCTTGGGATTGGtctcttcatcttcatgttGAGCATGATCTTCTGTTGCTACCTGTTCAGacTGAGGCGACAGGGCACACAAGAACAATATGGATATAATgaggtCATTCTAAAAGGTCCAGGGAAAAAGTTGAGCCTTCTTGGACAGACCTGTGCAGTTTGCCTGGAAGAGTTTCGGAGCCGGGATGAACTAGGAGTGTGCCCCTGTTCTCACGCATTTCACAAGAAGTGTCTGGTGAAGTGGCTGGAAATTCGTAGCGTCTGCCCCATGTGCAACAAGCCCATCTGCAGGCTCCAGCCAGATCCCCCGCAGGGGGCCGAGGGGCCCCAGAACCCCCTGGAGGTGTGACAGAAGAGATAGACAGGCTTTCACACACCTAAGAACAGCGTTAAAAAACACCAGGGCGGACGGACTAGTCCCTAATTCACAACAAACCGCCCCTGTCCACCAATCACCAGATTTCTCCTGCATAGATGGGGGGAGGGAGGGGAAGCGGGATTTTCCCAGTGCGACTGAACTGATGTGCCGTGTGTTCTTGGTCATAATGTAGCTTGCAGCACGATAAATTGATGCCTTGTGGACTCCAAACACTGGAGACAAACAAATATTCAGACCAGGACGGTTGCACAGAAACATGAGGTCTGAGTTGACACTGTGCAATGTGTGTGAATTTACAGAAGTCCTCCTCTAAGAGAGACTGCGGTcactattattactataaagAGTCATGTTTAGGAAGGCCCAGTTACAGAATGCAAAGTGAGGGAGCAGCTCAGAGTCTTGACCGTAAGGATCAGGGAGCTCATGGGATTTAACTCTTGCCAATACTTTGACGTTTGACActcataaatgtgtttgtttggagTCACGGAGGTGTTCTGAGTGCTAAAGGGAGCTCATGGTCTCGATGAGAACCCATTAAGGGATGCAGGAGCCTCAGAGCCAGATTGGATGAAATTTGGTCTAATTTAAATTAAGGTGGATGTTTTGTACTGTACATTGctcttaataaaatgtaaagtttctGTGATGGAA

Function

symbol description
si:dkey-51a16.9 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system.

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256019.1 False 2406 mRNA 0.47 6 9422476 9428137
XM_043256020.1 True 3014 mRNA 0.42 6 9423763 9428137

Neighbor

gene id symbol gene type direction distance location
LOC122356913 LOC107559323,LOC107743586,LOC107666393,LOC107601813,LOC107726938 coding upstream 2001 9418159 ~ 9420475 (+)
LOC122357057 LOC107726934,LOC107666357,LOC107559322,LOC107601796,LOC107743586,LOC107601813 coding upstream 5619 9414341 ~ 9416857 (+)
calhm1 calhm1,LOC107726957,LOC107601812 coding upstream 8280 9412350 ~ 9414196 (+)
calhm3 calhm3,LOC107726959,LOC107666391,LOC107743606,LOC107559321,LOC107578949 coding upstream 10356 9409751 ~ 9412120 (+)
LOC122356356 gsto2,LOC107726960,LOC107666561,LOC107559318,LOC107601879,LOC107743609 coding upstream 17840 9401987 ~ 9404636 (+)
pkd2l1 pkd2l1,LOC107666396,LOC107726939,LOC107743506,LOC107559329,LOC107655425,LOC107601815 coding downstream 8544 9436681 ~ 9443708 (+)
bag3 LOC107726946,LOC107666417,LOC107655437,LOC107743505,LOC107601798 coding downstream 23043 9451180 ~ 9456908 (+)
inpp5f inpp5f,LOC107726944,LOC107666413,LOC107743504 coding downstream 29420 9457557 ~ 9473534 (+)
LOC122356643 sec23ip,LOC107666414,LOC107655440,LOC107743502 coding downstream 54074 9482211 ~ 9491406 (+)
pcbd1 pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445 coding downstream 121596 9549733 ~ 9552495 (+)
G92147 NA non-coding upstream 146777 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 277965 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 324571 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 456887 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 525567 8836716 ~ 8896909 (+)
G92313 NA non-coding downstream 22309 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 51284 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 142852 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 164282 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 296259 9724396 ~ 9727967 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 258362 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 333355 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 394567 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 682381 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 739424 8666267 ~ 8683052 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 2041 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 776976 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 988103 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1536718 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1785389 11213526 ~ 11218175 (+)

Expression


Co-expression Network