pkdcca (pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469)


Basic Information

Item Value
gene id pkdcca
gene name pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3809053 ~ 3832550 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256022.1
cagtaatattattattaagagtGTTCAGGAAAATATgcaagttattttaatttacttttcttCCTGTTCGAAATCTGTGATCGATTTCTATTGCATTGCCAACTGAACATGTCCAGATCAACATAAAACATAGCAAAACGCTGTCAATAAACCACATAAGCTTTGGTCTGCTTAACATGGCTTCCTAGATTAGAAATAACCCAACACATGATGTTCGCGTTCCTCTCTCGACCACCGTTCACCGCCGACGCTATTCACGGAGGAACGGGCGTCATGCCGGTTCGGAGCGACCCGAGGGCGAGCAAACGACGACGGAGCTTTCCTCCgcgggtgaactattcctttaaaagccCGAAGCGCAGCTTTTCCATCCGTCCGCGGCGGGGCCGAGCCAGCTGCCAATCAAAGTGACGTCAGCGTGGTTCCAGTCGCGCTGAACGAGGCGCGGCGCCGGTGCGCGCTCCGAGACCCCCGTTAACTGGGCGCGCACGCGAGTGTCACCACGATCAGCCTTGCGCGGGGTGGATCTTAAATCATAACTGCAAGATGAAGACGTGAACACGCGGCACATCCTCCCGAGCGCAGCATCATCGACTTCCCTCGCGATCCTGAACGCTCCGCGCCGCACGATACTACACCACGGCGCGGCCAGACTGCCTGCAGCTGCCAGGCGGCCGGGCGGAGGCTGGAAGGGGCAACACGTCTATTTTCTgctgataataataagcaacaaaaTGAAGCGGAGGAAGATGGTGGTGGCGGCGGGCTTCTGCCTCTCGTTCCTCATGGGCACGCTGATGAATTTATTGTTTATCCCGGGATTCGAGCCCCTCGGCGAGCGCGTCCACCGCCACGAGAACCGGCTGCGGCAGCCCGACGCGGACGCTCCCGCCCGGCTTCGCGTCGACGAGCCGCCTCCCGTCGAAACGGCCACCGTCGGGCGACTCCCGGAGCTCCAGCGGCAGATACGCGAGCGGCTGGACGAGGTTCTGCGGTACCGGCAGAGGCGGGCGCACTGGGTCGGCACCGGACCGCTGGAGCGCAGGCGGCTCATGGATCTGGATCAGCGCGGCGAGGTGGAAACGTACAAAGGGAACGGGAAAAACAATCATTACGACCGGTCGCGACCGACGGTATCCATAGCAACAAAAGCGCACCGGGAGTTTACGCGCGAGTCGGTGCTCGGCTGTAGCAGTATCGATAACGTTACCAGTGTCCAGTATCTGGGCTCGGGATACACGAAGGCGGTGTACAAGGCGGCTCTGAACAGCAGCTTGTCCGTCGCGTTGAAATCGGTGGATTTTGGGGGTCACGACATGGAGAACTGCGTGAAGAAATACGGCTCGTCTACGGACTGCTACAAACTCGCGTCCTTCAAGATTATCAAGGAAATGACGCTGATGGAAAGACTGCAGCACCCCAATATTCTCAAGCTCTACGGCTACTGCTACCAGGATAACAACGATATAAAGGACACGGTGACGGCCATCACGGAGCTCGGCAGCCCTCTGGAGATGATCCAGCTGCTGCAGACGCCCTGGGAGGAGAGATTCAGGATCTGTCTGAGTCTGATGAGGCTGCTGCATTATTTGGCTCATTCCCCGCTCGGGTCCGTCACCCTGCTGGATTTCAGACCACGGCAGTTCGTCCTGGTCGGAGGAGCTCTGAAAGTGACCGACCTGGACGATGCCAGCGTTGAGGAGACGCCTTGCTCCCCGTCTTCTCCTTCAGACTGTCTCATGGAGTTCCCTGCCCGCAACTTCACCCTCCCCTGCCTCAAGGGCCGCTGTGAGGGTATCAACGAAAAGAGGAACCTCTACAACGCTTACAGatttttcttcACCTACTTGTTACCTCACAGTGCGCCATCAGCACTGAGACCCCTCCTGGATAAAGTTGTCAACTCTACAGGGGAGCTGATGTGGGGCACAGACGAAACCCTGGTTCACCTCGAAAAAGTGCTAGATATCTACAGGAACGGACATTACCTCAAGAATAACACACAGACGCACAAATCAGAGTATAAACACGTGTCGGATGCCTCGATAGCAGCGGACAACTACCGCTGCTGGCCGTCCTATCAGCATGACGGATGCCTGCTGTCAGTCTTCAGCGTCGATGAAGCTATCGACGTGTGTGAGAGCCATGCCCAGTGCCGGGCCTTCGTcatgaccaatcagagcacatgGACAGGTCATCAGCTCGCGCTCTTCAAAACCGGAGCAGCCAGCATGACCGCGGCTCCAGGTAAACTCACGTACATACGACTGGGGGCAGCTGAGAGCTGAGATGAGAGAGACATCTCTCAGTCTTCATCGGTATCTCCAGATCTTCTCCCTCTGAAGACGCCCGTGCGCTGTCGTTCCTGAAGGCATGCTGCTCAGGATTCTGGGGGACGGTCAGAAGACTCGCTCGGGCAGAGGTCAGCTGTCAGCTATGTGCAATACTGCCTCTCTGAACCTGGGACTGGactgtgaatgtgtttgtgtaccTGGCAGAGACGCAGAGAGGCTGTCTGTGCTTGTCACGGCaacgtgtgtgagtgtgtgtgtgtgtgtgtttaatgagaTCTCATGTCAATATcgctttcattctttctttctctcaatcTGTCAGTGATTGTCTGTTTCTGCCCAAACAGGATCCTCCTTTATTTGCTTTGATATTCAGCACTTTTTCAGCACGTGAAACAGGGTCTTTTGTCAAGCTTTTAAAAGCATTCGCTTTGATTTTCgagatctttttaaatatttgctcgCGTAAAACAAATTAGTCTGACAATTGGTTCCAGACGCTCATTTAGACTGGTCTAAACAAGTAATTTATTggtttaatgaatgaaaatgcctcttctaaattatgaaatcatttttaaaagtttgctgaaacacacaaaccGATCAGCAGTAAATCAATTCAATTTTTTTCCATGTCATTTGATTTCTTgttgttattttcattatgtATTGACAGATGTGAGAGGTTAGTTGTGGTATGTCATTGTTAGATGGTGGTCAGTTAGCCAATCCTCTTGTGGTGTGATAAAGTTTCCCAAGGAAATGTCATGTCAATCTATTACTTGACAGGTGAAGGAGTTCAAGAGATTTCTGCTTTCAGCGAAAGCACTGAGATGTACATGTTTTCTAACGAGTCTTACGGTCGTGTTGTATATGagagtaatatttttatattgaaatataaagacATGAGACTTTAAAAAA
>XR_006252399.1
atcaacagtaatattattattaagagtGTTCAGGAAAATATgcaagttattttaatttacttttcttCCTGTTCGAAATCTGTGATCGATTTCTATTGCATTGCCAACTGAACATGTCCAGATCAACATAAAACATAGCAAAACGCTGTCAATAAACCACATAAGCTTTGGTCTGCTTAACATGGCTTCCTAGATTAGAAATAACCCAACACATGATGTTCGCGTTCCTCTCTCGACCACCGTTCACCGCCGACGCTATTCACGGAGGAACGGGCGTCATGCCGGTTCGGAGCGACCCGAGGGCGAGCAAACGACGACGGAGCTTTCCTCCgcgggtgaactattcctttaaaagccCGAAGCGCAGCTTTTCCATCCGTCCGCGGCGGGGCCGAGCCAGCTGCCAATCAAAGTGACGTCAGCGTGGTTCCAGTCGCGCTGAACGAGGCGCGGCGCCGGTGCGCGCTCCGAGACCCCCGTTAACTGGGCGCGCACGCGAGTGTCACCACGATCAGCCTTGCGCGGGGTGGATCTTAAATCATAACTGCAAGATGAAGACGTGAACACGCGGCACATCCTCCCGAGCGCAGCATCATCGACTTCCCTCGCGATCCTGAACGCTCCGCGCCGCACGATACTACACCACGGCGCGGCCAGACTGCCTGCAGCTGCCAGGCGGCCGGGCGGAGGCTGGAAGGGGCAACACGTCTATTTTCTgctgataataataagcaacaaaaTGAAGCGGAGGAAGATGGTGGTGGCGGCGGGCTTCTGCCTCTCGTTCCTCATGGGCACGCTGATGAATTTATTGTTTATCCCGGGATTCGAGCCCCTCGGCGAGCGCGTCCACCGCCACGAGAACCGGCTGCGGCAGCCCGACGCGGACGCTCCCGCCCGGCTTCGCGTCGACGAGCCGCCTCCCGTCGAAACGGCCACCGTCGGGCGACTCCCGGAGCTCCAGCGGCAGATACGCGAGCGGCTGGACGAGGTTCTGCGGTACCGGCAGAGGCGGGCGCACTGGGTCGGCACCGGACCGCTGGAGCGCAGGCGGCTCATGGATCTGGATCAGCGCGGCGAGGTGGAAACGTACAAAGGGAACGGGAAAAACAATCATTACGACCGGTCGCGACCGACGGTATCCATAGCAACAAAAGCGCACCGGGAGTTTACGCGCGAGTCGGTGCTCGGCTGTAGCAGTATCGATAACGTTACCAGTGTCCAGTATCTGGGCTCGGGATACACGAAGGCGGTGTACAAGGCGGCTCTGAACAGCAGCTTGTCCGTCGCGTTGAAATCGGTGGATTTTGGGGGTCACGACATGGAGAACTGCGTGAAGAAATACGGCTCGTCTACGGACTGCTACAAACTCGCGTCCTTCAAGATTATCAAGGAAATGACGCTGATGGAAAGACTGCAGCACCCCAATATTCTCAAGCTCTACGGCTACTGCTACCAGGATAACAACGATATAAAGGACACGGTGACGGCCATCACGGAGCTCGGCAGCCCTCTGGAGATGATCCAGCTGCTGCAGACGCCCTGGGAGGAGAGATTCAGGATCTGTCTGAGTCTGATGAGGCTGCTGCATTATTTGGCTCATTCCCCGCTCGGGTCCGTCACCCTGCTGGATTTCAGACCACGGCAGTTCGTCCTGGTCGGAGGAGCTCTGAAAGTGACCGACCTGGACGATGCCAGCGTTGAGGAGACGCCTTGCTCCCCGTCTTCTCCTTCAGACTGTCTCATGGAGTTCCCTGCCCGCAACTTCACCCTCCCCTGCCTCAAGGGCCGCTGTGAGGGTATCAACGAAAAGAGGAACCTCTACAACGCTTACAGatttttcttcACCTACTTGTTACCTCACAGTGCGCCATCAGCACTGAGACCCCTCCTGGATAAAGTTGTCAACTCTACAGGGGAGCTGATGTGGGGCACAGACGAAACCCTGGTTCACCTCGAAAAAGTGCTAGATATCTACAGGAACGGACATTACCTCAAGAATAACACACAGACGCACAAATCAGCTTCCCTCTTTTATTGGGGCCCGGGGTCATGTCGAGTGGCTTTTAAAGTGCGCGTATGAGTGAGTTACAGAGGAAGCAAAAGATAAAGGCAGAATCAGAAGACACATGTCAAACTCTGACCAACAACAGCATGAAGACTCCCCTCGACGGAGAACAAGACAGCCCCTGTGTTAACACAATGACAGAGATTGTTTCACTAGTATAAACACGTGTCGGATGCCTCGATAGCAGCGGACAACTACCGCTGCTGGCCGTCCTATCAGCATGACGGATGCCTGCTGTCAGTCTTCAGCGTCGATGAAGCTATCGACGTGTGTGAGAGCCATGCCCAGTGCCGG

Function

symbol description
pkdcca Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; fin bud; margin; and pharyngeal arch 3-7. Orthologous to human PKDCC (protein kinase domain containing, cytoplasmic).

NR:

description
extracellular tyrosine-protein kinase PKDCC-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17548 PKDCC; extracellular tyrosine-protein kinase PKDCC 

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256022.1 True 3221 mRNA 0.52 7 3809058 3832550
XR_006252399.1 False 2362 transcript 0.56 7 3809053 3829741

Neighbor

gene id symbol gene type direction distance location
ubr2 ubr2,LOC107669566,LOC107696377 coding upstream 49918 3729913 ~ 3759135 (+)
si:ch73-193i2.2 LOC107728794,LOC107590009,LOC107696375,LOC107739482 coding upstream 79585 3717296 ~ 3729468 (+)
LOC122356793 LOC107669554,LOC107696371,LOC107578696 coding upstream 91759 3713833 ~ 3717294 (+)
LOC122356604 LOC107739472,LOC107565599,LOC107669574 coding upstream 368739 3434523 ~ 3440314 (+)
ncoa4 LOC107739471,LOC107669570,LOC107696383,LOC107728073 coding upstream 382317 3417534 ~ 3426736 (+)
LOC122356299 eml4,LOC107586470 coding downstream 49036 3881586 ~ 3948955 (+)
trnai-uau_4 NA coding downstream 239256 4071806 ~ 4071899 (+)
plekhh2 LOC107678558,LOC107707149,LOC107699295,LOC107586497,LOC107590017,LOC107727353 coding downstream 493088 4325638 ~ 4348853 (+)
LOC122356796 NA coding downstream 527985 4360535 ~ 4362542 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding downstream 531473 4364023 ~ 4373553 (+)
G90514 NA non-coding upstream 239561 3569068 ~ 3569492 (+)
G90388 NA non-coding upstream 265401 3502068 ~ 3543652 (+)
G90381 NA non-coding upstream 319262 3469447 ~ 3489791 (+)
G90378 NA non-coding upstream 358568 3450173 ~ 3450485 (+)
G90373 lrrc73,LOC107696385,LOC107728077,LOC107739469 non-coding upstream 405299 3401964 ~ 3403754 (+)
G90564 NA non-coding downstream 19660 3852210 ~ 3855543 (+)
G90571 NA non-coding downstream 40209 3872759 ~ 3894955 (+)
G90573 NA non-coding downstream 120050 3952600 ~ 4049612 (+)
G90579 LOC107586473,LOC107758132,LOC107666233 non-coding downstream 159958 3992508 ~ 4013116 (+)
G90646 LOC107707147,LOC108422651 non-coding downstream 224710 4057260 ~ 4062779 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 95290 3620406 ~ 3713763 (+)
G90377 NA other upstream 359036 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 528056 3277837 ~ 3280997 (+)
G90343 ppp2r5d,LOC107696374,LOC107559765 other upstream 534681 3271325 ~ 3274372 (+)
LOC122356782 NA other upstream 599300 3207411 ~ 3209753 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other downstream 349949 4182499 ~ 4353931 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 729098 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 1159603 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 1345168 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 1428486 5261036 ~ 5271247 (+)

Expression


Co-expression Network