LOC122356918


Basic Information

Item Value
gene id LOC122356918
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14610347 ~ 14613352 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256026.1
AAACAGATGCGGGCTAAAGATTTCACAAGAAACACATGACGACAAGAAACGACGGCGGAGCGCAAATAAAGTGACACTTTCTACTTCAGTTAGTGTTGATCGTTTCGTTTTCTGAAGAGGATACACCCAAAAACCTTTAAACTTCAACTCTCATACATATAAGCAAACAGTTCAACTCCGTTTCGGTTTACTTAGGATGGATGCATgTACAATGATTGCAGCTGGTGCAGGAGCAGTCGTGACGGTAGTTGCAGCTCCTGCTGTTCTGACGGCGGCGGGGTTCACTGCGGGTGGAATCGCTGCAGGGTCCATCGCCTCGTCTTTGATGTCAGCTGCCGCTGTGGCAAACGGAGGAGGGATCGCGGCTGGATCCGTGGTGGCAGTTCTTCAAGCCGCTGGTGCGGCTGGAATCCCCGTTGCAGCTCAGGCTGTCATCGGTGCTTTAGGCGGCGCGGTGGGTGCCGCCGTGGGTGGACCATTGATATGTAGCGCAGGAGCCACAGgtGCTGTCACAAGCGGAGGTGTCATGGGCACTGTGGGAACTGCTGTGACCTCAGTTGCCAGGTTAATTGGCAACTGCACTGCGTAAATGCCCCAAAAGCCCTTCAGAAAATGTAAGGATTCATAAAGTCAAACACGGCATTTATCTAATCTACAACCACAAACATGGGCGCTATTAAACCTTATTTGATATGatattaataatcatcatcagTATCTTTTTCTTCTGCTGTAGATTCTAGTCTAGCTTTCTACTTTAAACTTAATGTTTAACTTAATACACCACATAAACTGTTTGCTCCTATGAAATATTGCTTGtgatatttgtataaatatgtctgctaaatatattcatatttaatatattttttaatatctgtATTGGATATTTGCTAAATGGGTAAATGTCTTGCTAACATTGTCCATATCTTTGGGGGAAAACCTGTAACATATGCTCCCCGTTTTCTATTCTAGACTAAATTGTaagtctgagctgtttcaagtaaaataaacttgcGCTGATTGATCTTAAAACA
>XM_043256027.1
TGCGGGCTAAAGATTTCACAAGAAACACATGACGACAAGAAACGACGGCGGAGCGCAAATAAAGTGACACTTTCTACTTCAGGTAGCTTTACAAAGATTTGTTATCCCGTGCGAATTAATATTACAGACGTCCTAAGTTAGTGTTGATCGTTTCGTTTTCTGAAGAGGATACACCCAAAAACCTTTAAACTTCAACTCTCATACATATAAGCAAACAGTTCAACTCCGTTTCGGTTTACTTAGGATGGATGCATgTACAATGATTGCAGCTGGTGCAGGAGCAGTCGTGACGGTAGTTGCAGCTCCTGCTGTTCTGACGGCGGCGGGGTTCACTGCGGGTGGAATCGCTGCAGGGTCCATCGCCTCGTCTTTGATGTCAGCTGCCGCTGTGGCAAACGGAGGAGGGATCGCGGCTGGATCCGTGGTGGCAGTTCTTCAAGCCGCTGGTGCGGCTGGAATCCCCGTTGCAGCTCAGGCTGTCATCGGTGCTTTAGGCGGCGCGGTGGGTGCCGCCGTGGGTGGACCATTGATATGTAGCGCAGGAGCCACAGgtGCTGTCACAAGCGGAGGTGTCATGGGCACTGTGGGAACTGCTGTGACCTCAGTTGCCAGGTTAATTGGCAACTGCACTGCGTAAATGCCCCAAAAGCCCTTCAGAAAATGTAAGGATTCATAAAGTCAAACACGGCATTTATCTAATCTACAACCACAAACATGGGCGCTATTAAACCTTATTTGATATGatattaataatcatcatcagTATCTTTTTCTTCTGCTGTAGATTCTAGTCTAGCTTTCTACTTTAAACTTAATGTTTAACTTAATACACCACATAAACTGTTTGCTCCTATGAAATATTGCTTGtgatatttgtataaatatgtctgctaaatatattcatatttaatatattttttaatatctgtATTGGATATTTGCTAAATGGGTAAATGTCTTGCTAACATTGTCCATATCTTTGGGGGAAAACCTGTAACATATGCTCCCCGTTTTCTATTCTAGACTAAATTGTaagtctgagctgtttcaagtaaaataaacttgcGCTGATTGATCTTAAAACA

Function

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256026.1 False 1037 mRNA 0.44 6 14610347 14613352
XM_043256027.1 True 1085 mRNA 0.43 6 14610347 14613345

Neighbor

gene id symbol gene type direction distance location
ifi27.1 NA coding downstream 1707 14607380 ~ 14608640 (-)
snapc1b snapc1,LOC107726585,LOC107602935 coding downstream 4266 14601464 ~ 14606081 (-)
syt16 syt16,LOC107726601,LOC107602979,LOC107683639,LOC107553223 coding downstream 10084 14576907 ~ 14600263 (-)
sgpp1b sgpp1,LOC107726595,LOC107602978,LOC107683631,LOC107553224 coding downstream 33999 14563389 ~ 14576348 (-)
wdr89 wdr89,LOC107602933,LOC107683929,LOC107553226 coding downstream 47969 14557244 ~ 14562378 (-)
LOC122356917 NA coding upstream 869 14614221 ~ 14615925 (-)
LOC122356920 NA coding upstream 3447 14616799 ~ 14618999 (-)
eys si:ch211-69e5.1,LOC107553185,LOC107736852,LOC107664247,LOC107747288,LOC107683858 coding upstream 17242 14630594 ~ 14787104 (-)
slc35f3b slc35f3,LOC107747268,LOC107665565,LOC107664233,LOC107736862 coding upstream 706305 15319657 ~ 15370350 (-)
zgc:171482 zgc:171482,LOC107747266,LOC107665614,LOC107702738,LOC107564682,LOC107728442,LOC108262817 coding upstream 829713 15443065 ~ 15507712 (-)
G93905 NA non-coding downstream 420443 14187539 ~ 14189904 (-)
G93879 NA non-coding downstream 680053 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 921721 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 944087 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 946436 13661750 ~ 13663911 (-)
G94003 NA non-coding upstream 259080 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 367644 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 666055 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 991335 15604687 ~ 15605713 (-)
G94145 NA non-coding upstream 1026923 15640275 ~ 15640633 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 445933 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 527557 14079532 ~ 14082790 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 698510 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 705645 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 892033 13693026 ~ 13718314 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 411480 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 613980 15227332 ~ 15253357 (-)
G94128 NA other upstream 951265 15564617 ~ 15583917 (-)
G94147 NA other upstream 1028679 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 1072918 15686270 ~ 15720816 (-)

Expression


Co-expression Network