phf3 (LOC107665590,LOC107726593,LOC107602981,LOC107736851,LOC107683665,LOC107553234)


Basic Information

Item Value
gene id phf3
gene name LOC107665590,LOC107726593,LOC107602981,LOC107736851,LOC107683665,LOC107553234
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14620165 ~ 14630849 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256032.1
TTGTTTGCTGGCTCAGAGGGTCAACAGGAAGTACTACTTGTGTCCCACCGCAGTTCTCAAGCGGAAAAGGTTGTGGCATTAACGACAACCCGTATGGCGTCCAAACAACGTAAACGATAATACAAGCCATTCTCCCATTATGCGCTGGCTCTTCGATCACAGTGACGAACGCGAGCAAACCATACAGTGCAGGCATTCATGGATATAGTTGGTGGTCCATTCAATCATCTGGTTCCCAGCGACCAGTTGGATGATTCCTTACTGCTCGGACAAAACCTGGAGTGTGAAGCTAGTGATGACTTTGAAGCGGGCAACGACCAACCCGAAGATTCTCTGAAGAACATGCTCAGCGACAAAGATCCCATGTTCGGGTCTGCTAGCACCCAGtttcatattttagaaaatgaagATGTCAGTTTTAAGATTGGGAGCTCAACAGCTGCAGATCATGACATGACAACGGCAGGTGTTAGTCAGAGTCCATCTGATGGAGAAAGCGGTCAGTCCGGCTTCCCGCAGGGCAGAAGACATTTACAGAGGAGACAAACAGcaAGCCGCGGTCGAGTTAAAGGCAGGCGCCCAGGTCCTGCGCGAAAAGCAGCTGAGAATAACAAGCAAGAGTCAACATGTAGCAAAAACCCAGGTGGAGATAAAAGCCGTGATGCAAAAAGGGAAGCCCTGCTCAGCCGTCGTTTTGGAGTCCACGAAGTTGACTCCTCTATGAATCCAGTAGTTGTGTTACGTCGATTAACTGTTACTGTGGGGGGTTATAAAATAGAACTGCTTCCTGGCCCTTCGCATGCATTCGGATCGTTTAGCACAAGTGCTCTTCAGTCTCTGGGCTTCCAGGATGATGGTGTCGCATCTGATGGCCTTGCAGTTGTTGATTTGGGGCAAAATCGAGATGATGGCACACAAGAAGTTGTTAATTCTGCACAAGAGGTAGCTGGGGAAGTGAGTGTCAGCCAGTCAACCGGAGACGAAATGCCTATGGATTTTGGGCCGTATGTGAACCCTAATGAAGTACAAGACACTAACAGCACCATGCCCCCGAAGACCAGCGTGGAAAACGCCACACCAGGAGACGCCAAAAAGAATGACCAAATCAAGACCCGAAAGATAAGCGCACAAAAACCAGGGAACAAGAACGGCACAGCGGTTCAACCAGCAGTGAAAAATCTTCTGAAAGACAAACAGTCTCTGGCTGCTGCCAAAAATAAACCACCTCATCTCACCAGGCCAGGGCTCTTGCAGAAAGCATCCAGCCATCCCAGAGACAAAAAGATAGATGCAGGCCGCCCAGAAAGTCTCAAAGGAAAGCCCGTGGGCTTGAAACGTCCAGGTGGGCCAGTCACTTCTAAATCGCcctcaaaaatacaaaagattCAAGATGAACCTCCTGCGAACCAGACCGTAAACCCACCTGTCCCGGTGTCCCCGACTGTCAGCAGAAAACCCTCATCTGATTCTGGTCCAGGTGTCAAGTCGGTCCAATCGCCTCAGCCTTCGAAAAAGCCGCAAAATCCTCCCACTCccactgtaaacaaaacaaacccacCTGTGACAAACAGCCAAGGAGAAGAGGAGCAGGAGAAGGCCAAGATCAAGAAGCCGGAGAAGATCCAGCAAAGACATAAGAGTAGAAACTCAAGGAGCGTCTCGATAGAGGAGCCGCAGCTGTTTATCCCTGATAATGCCCCCGTGGTGAAGAAGGATGCCGAGGGCGAGCCTCCTCCTGAAAGCGAGACTGTGTGGGATCCCAGCAAGCACTGTGGATTATGCAAGAAACCTCACAACAACCGGTTCATGGTGGGCTGCGGCCGCTGTGATGACTGGTTTCATGGGGATTGTGTGGGTCTGGATCTGGCTAAAGTTCAGCAGATGGAAAAGGAGGACCAGGAGTACGTGTGCTTGAAATGCTGTGCAGAAGAGGATGGGAAAACCGGTGTTCAAGCCGCAGAGCAGTCAGATGATAAGTTGTCTGCTAAGCAAAAACAGAGACCCCAGCAGTCGGTCACTGCAGGTGGAATACGACCCTTCAGAAAAgATGTTGGAGAACGACGACCGTCAGAAGATTCAGCATCAAAAGgACCAAGTGTGAAGCATGAGGcgaagaaaatgaaaatctcACCAGTGACCTCAAAGAAACCGTCCACTGGACAAATCAGGCGAAGCGTTCGGGACTCACTGGAGGAGATTCTTTTGAAACGACTGAAGGAGGCCGAAATGAAGATTTCATTGGACAAGCCTGCCGAGTTGGCcagaagaacagaaaaagagcTTTTTGCTCTCTTTCAGGGTGTTGacagcaaatacaaaaataaatacagaagtCTGACTTTCAATCTGAAAGattcaaaaaataatgTGTTATTCAAGCGGGTGCTCAAGGGGGAAGTTTCCCCTGCAGATTTGGTGCGTATGACTGCAGAAGAGCTGGCCTCGAAGGAACTGGCTGCttggagacaaagagagaatCGACATACAATTGAAATGATTGAGAAAGaacagagagaggcagagagacgTCCTATTACTAAAATCACCCATAAAGGGGAAATTGAAATTGAGAATCAGGAGCCTGCCAAGGCGCCAGAGGCCATAGAGGTTGAGCCAGAGCCAGTGCCGAAAGCTGCGGAAGTGCCTGAAGAAAAACCCCCTGAGACTAAAGCTGACAGTCCTAGAAAATCTGTAGATACCACTAACTTGCACAAGTCTCATCTGTTTGACCTCAACTGCAAAATATGCAcagGTCGCATGGCTCCCCCTACAGAGGAAGCCTCTACAAAAGTGGTAAAAGTGGCTACAACAGTTGTGAGGAGGCAGTCTAGTACGACAGATGAATCTCAGCACTCAACAACTACACCTACATCAGCACTGATGGACGATCTGTCTTTAAGAGCCATGGAGGAAGGCCTCCTCAGTTTTTTGCCTGAATCCAGgTCAGATACTTTAAGTAGCAAAGAAGACACAGCTACTTTCCTCGGCAGTTTGGAAAGTCTGTGGAGCGGATTTGTTGACATGCCGGCTGTGGCAAGGTTTCTAACAAAAGCTTATCCCGTCTCTGGAATACTAGACCACCTCACACAGGATTTGCCGGACAACATCCAAGTAGGTGGACGAATCTCCCCTCAAATAGTCTGGGATTATGTTGAGAAAATCCGTGCTTCCGGGACAAAGGAAATATGTGTTATTCGTTTCTCCCCTGACACCGAGGAAGATGAGATCTCGTATACTTTGCTGTACGCCTATTTCAGCAGCCGAAGAAGGTATGGTGTTGTTGCGAACAACCGCAAACAAGTTAAAGACATGTATCTCATTCCTCTCGGCTCCACAGAAAAAATTCCCCATCAGATTGTACCATTTGATGGTCCAGGACTGGAGACCAATCGTCCCAATCTTCTTCTCGGATTGGTCATCCGCCAGAGACCAAAAAGGGACTTTGGTGTAATACTGCCAAGCGATGTCAGCGAAGCTCCAAGTTTCTTGGCAGAAAGCAAACCTCATGTCGATTACCCACAGAAAACTCCTGTGGCTCAAGATGTGGAGAGAAGTTTTATCACTGCTCTGGCGAGCACACGGAAAAAAGACACTGCAGACTTAATTAAGTCCGCCGTTGACGAACCTATATTGGATACAGAGACCGAAGAGAATGTTTCTTTGCGCTTTCTTCCCGGGGTGCTGAAGTTGCCTGGAAATGCAGCATCATCTTCAAGCGACACTGTGAAGAGTGATTCTACAACAACCGTAGCCAAGACTCCAACCCCTGATAGTGGAAACCATGCAGAAATCCATCCTAAACCTACAGCCACCGCTCCTCGTCTTGATCGCTTCATTATCAAGAAAAAAGACCCCAAAGCTGTTAAAGCTGAGCAGGCGCCATCCAGCTCCAATTTGGAGACCAGCTCAGTAAAGAAAGAGAGTGGAGTCATCCTTTCTCTAAGTGACAAACCTGCAGATGTTTCAACAGAGAGTTTCCTTTCTTCTCTCACGGCCGCTAAACCCAAAGATGAGTCTGTGCTTGGCAGCACAGCTTTACCAGCTAGTCAAGAAACAAGTGAAACAACTTCATTGGATGCATTGAAAGATTCTGTCAATGATGACGCTAGCTCTGTCCCGAAAAACGAAACCGTATCAAGTCCCAATATGTCTTTGAAGACATCTCTTGGTATTTTAAAGACGCCGTCTTTATCGAGTGAATCCATCGAGCTGAAACCTCAACAACCAGAAAGTAATTTAGAAAAGAAAGTTACCCAGCAACCATCAGCGCAACCCCCTCAAGAGTGCAAAGCCATAGAGGACATTCAAGCCATCACCACAATCTCCTCCTTCGGGAAAAACGATGGTCCCAAACAAACCAGGACCTCTTCTTTTAACCCTAAAGTGTATAATCAAGCCACAATTTTTCACTCGTATCATGCTGGTCCACCTGATCCCCAATATTATCCTCCTCCAGCCAATCCTGTCCCTTTCTTACCCCTTCAGTCACAGGTTCCTCCGCCTTTCCCGTTTCCTCCTGGTCCACCTCCTCTTCCACAGATGTTCCCTCAAAGCGATCCTCACATGCTCACTCCACCTTGGCCTCAAACCGTCCCTCCCCAAACGCTCCCTGTCCCTCCTCTGACGTATGATTCCAGCTTGCCAACCTCTTCTCCCCTCAGCAAAGACGAGAAGGGCTCGGAGAAGTCCTACGACGACTTGGGCGACAAGCCGTCCAGAAGGTCTGATGAGACCTACAGGAAGGacaatagagagagagagcagtatGACAGACACCATCACAAAAGCAGGCACTACGACAGGGACCGAGAAAAGCACAGGGACAGAAGTCAGAGTCATAAAGAGCGCCACTCGAAAGAGGACAGGTACGACAGACCGAGAGAGCGGCACCACAGCGGCAGtcattacagagagagagacaaacacagacgaGATTCTGACTATGAGAAACACAGGAGAGACTCGAGAGACAGGCGTTCATGATCTTGGCATCAAACCGCTCCACTTTCCTTAAATCTGTCAAACAGTAgaagaaaactatttataaagttgcaaaataatttttatatggAAAAGCAGCTAGTATGAGacttttagttgttgttttttttgcaatcaaaaggatatttgttttgttttaatttacattttcccTTCCCATTACTCACTAACATTGTCTTCACAAGCAGCTGGTTgtaatcaaaaaaacaaaactactgTCGTACGCAAAGCTCATGGTTGATGAGAACGGCTTCTTTTGCTTcacgtttatttttgttttaatttttctaaatttgGCTTCTGAAGTATTTTCTATGTTTCAGGTGACAAATATTTCTTTGTACATTTTGGCTTGTCACACAACGGAAATGTGCATATTCAGCACAATGTGTTTATGTACAgttcataataaaatgtttttattgttagtaAAGCGACTGAATAA

Function

NR:

description
PREDICTED: PHD finger protein 3-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256032.1 True 5446 mRNA 0.47 17 14620165 14630849

Neighbor

gene id symbol gene type direction distance location
gphb5 gphb5,LOC104954562 coding upstream 132665 14485066 ~ 14487500 (+)
esr2b LOC107736782,LOC107683586 coding upstream 226978 14377594 ~ 14393187 (+)
tmx1 tmx1,LOC107654918,LOC107602932,LOC107736746,LOC107683560,LOC107705366 coding upstream 275304 14339891 ~ 14344861 (+)
atl1 atl1,LOC107705445,LOC107602974,LOC107736665,LOC107682422,LOC107553217 coding upstream 343726 14268377 ~ 14276439 (+)
dmac2l atp5s,LOC107705443,LOC107602971,LOC107654946,LOC107736634,LOC107553216 coding upstream 384132 14232374 ~ 14236033 (+)
zgc:171579 zgc:171579,LOC107665586,LOC107568696,LOC107736860,LOC107747305,LOC107579559,LOC107664312 coding downstream 208933 14839782 ~ 14842432 (+)
adgrb3 adgrb3,LOC107664175,LOC107665593,LOC107736840,LOC107747274 coding downstream 243066 14873915 ~ 15011010 (+)
zgc:172136 LOC107665601,LOC107601056,LOC107747271,LOC107664217,LOC107736845 coding downstream 647511 15278360 ~ 15295194 (+)
golga7bb golga7bb,LOC107728443,LOC107702732,LOC107665585,LOC103368019,LOC108247940 coding downstream 951019 15581868 ~ 15607881 (+)
slc25a28 slc25a28,LOC107601050,LOC107747263,LOC107719215,LOC107665596 coding downstream 1083344 15714193 ~ 15723743 (+)
G93833 NA non-coding upstream 1515 14613092 ~ 14618650 (+)
G93820 NA non-coding upstream 5122 14614225 ~ 14615043 (+)
G93819 NA non-coding upstream 8165 14607396 ~ 14612000 (+)
G93840 syt16,LOC107683639,LOC107553223 non-coding upstream 35688 14582319 ~ 14584477 (+)
G93839 sgpp1,LOC107726595,LOC107602978,LOC107683631 non-coding upstream 43835 14575380 ~ 14576330 (+)
G93966 NA non-coding downstream 47550 14678399 ~ 14678599 (+)
G93978 NA non-coding downstream 381701 15012550 ~ 15012780 (+)
G94091 slc35f3b,slc35f3,LOC107601026,LOC107747268,LOC107665565 non-coding downstream 693198 15324047 ~ 15329518 (+)
G94101 NA non-coding downstream 799449 15430298 ~ 15434168 (+)
G94104 NA non-coding downstream 803613 15434462 ~ 15453608 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other upstream 250608 14354115 ~ 14369557 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other upstream 431172 14185315 ~ 14188993 (+)
G93613 NA other upstream 710562 13739607 ~ 13909603 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other upstream 859431 13749135 ~ 13760734 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 1461725 13134473 ~ 13158440 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 475609 15106458 ~ 15226722 (+)
fam135a LOC107747270,LOC107665594,LOC107736843,LOC107664195,LOC107564672 other downstream 624225 15255074 ~ 15275234 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other downstream 665000 15295849 ~ 15314656 (+)
LOC122356934 LOC107747267,LOC107665602,LOC107601027 other downstream 683965 15314814 ~ 15318177 (+)
hps1 hps1,LOC107747297,LOC107665607,LOC107719211,LOC107702747,LOC107586068 other downstream 1233990 15864839 ~ 15871816 (+)

Expression


Co-expression Network