ggps1 (ggps1,LOC107728322,LOC107730383)


Basic Information

Item Value
gene id ggps1
gene name ggps1,LOC107728322,LOC107730383
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20220280 ~ 20241921 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256033.1
GTGCTCTCTGTGGAGTCCATGGCGTATTTAAGCGCGAGCGGCAGGGATGAGTGAGCTTCCTGTCAAACCCAGACGTGACAGATCAACTGAAGGCTCTCTGGCGCGTCTCAGAAAGCCACTCCACATCCGTACAACGGGATATCACGGTGATAAGGAGGATACGGTGCCACGTTGGTCGTGTTTCCGATGATCTGTGCGTCGAAGTGGAGTTAAATTGTCGCCTTTGGCTAACTGGCTAAAGCTAGCGAGCTGGCTGCCAGTGGGGAAAAAATTGAAAGCGGAAGAGTGACGTGCTGGTTTACGAAAGCGGAAGTGCTGGAGTGCGGATTTTTCATCTGAAAGcAGGTTCTTCTCAGAAACGGAGGGATGGATGGAGACGAAAGAGCAACTTCTGAAAGGATTCTTCTGGAGCCGTACAAGTATTTGTTACAGCTGCCAGGAAAACAAGTCCGAACAAAACTCTCACAAGCGTTCAACCACTGGCTCAACGTCCCAGACGACAAACTTCAGGTGATCATCGAGGTGACGGAGATGCTGCACAACGCCAGTCTGCTGATCGACGACATCGAGGACAGCTCCAAGCTTCGGCGCGGCTTCCCGGTGGCCCACAGCATCTACGGCGTGCCGTCGGTCATCAACTCGGCCAACTACGTCTACTTCCTGGGCCTGGAGAAGGTGCTGACGCTGGAGCACCCCGAGGCCGTGCACGTCTTCACCCGGCAGCTGCTGGAGCTGCACCGCGGCCAGGGCCTGGACATCCACTGGAGGGACACCTACACCTGCCCGAGCGAGGCCGAGTACCGCGGCATGGTGCTGCAGAAGACCGGCGGCCTCTTCGGCCTCGCCGTGGGCCTCATGCAGCTCTTCTCCCTCTGGAAGCGAGATCTCAAGCCCCTCTTGGACACCCTGGGGCTCTTCTTCCAGATACGGGACGACTACGCCAACCTGAGCTCGACCGAGTACAGCGAGAACAAGAGCTTCTGCGAGGACCTGACGGAGGGCAAGTTCTCGTTCCCCACCATCCACGCCATCTGGTCGCGTCCCGAGAGCACGCAGGTGCAGAACATCCTCCGGCAGCGCACCGAGAACGTGGACATCAAGCGCTACTGCGTGGACTACCTGGAGAAGGTGGGCTCGTTCGCTTACACCCGGAAGACGCTGCTCGACCTGGAGGCCGAAGCCTATCGCTTGATCGCCGAGCTCGGGGGAAATCCTGAACTCGAGGCTCTGGTGCAGCATCTGAGTCGCATGTATAAAGAGCATGAGGGCGGAGCTTTGGAAGAGCTCGGGGGCGGGGCTTCGAACGAGCTAGGGGCGGGGCTGCAGGCAGGCAATCGAAAGAGCTCGGGGGCGGGGCTTCGAAAGAGCTCGGGGGCGGCCAATCAAAGCGATGACTTTGCACTGGGAACAAACCCGACTCCACTGCAGTTGCCTTCAGTTCAAAGTCTGTCGTTTCTGTCTCGTTCACATTTCAAGGCGTTGCAGCTCGCACATGAAGAGTAACAGGACCTCTCGGTATGCGATATCTGGTCAGTATTTATGTCCTGTAATTAGCATCTAACGATGGACGGAGGCTGCttgttgcatttataaatgaaccgggaagaaacatttaaagtttATACCATGTCTGCCGTTTCACCACCAAATCAAAGcaaatgcattgttttgcttaataaataaaataaaggcgtttttttttttttttacttttactttttttattatttaaatattactattacagtatctgtcaaataaaacaaacactttgcattcatacactgcaaaaaggccttcattttattaaaactaaatattgttcTCATTTTGTATTGTACCaacaaacaatttattaaaattgagaattattattattattatattagaacATCTGCTGTACTGATGAGAtttattataagaaataataaaaataaattttatttatttttgctgatgATTTCGGGTGGAAATGTGGCAGATGTTTTTTGGTGAAATGTCTTTCtctgtaataaaataagacaCGAAAGACTTTCCCAAAAGGCATAACGGTGTCCCGTGTGTTTGCGGTGAATCTCACTCGACGCTCGAACACCTCTGAAAGAGTGAACCGAGACGAGATCTCACATGTTTGCCGTTTAAAAGCTCACCTTTTTTCACCTTTGAACAAACAGACGGTGGTGTGTTATTCATTCTGTATATGCAGTTTTAcgttttggatgtttttttgttgttgttgttgttttttaataaccatTCTATGGATAAACACTTTCGTACACTTATCTTAA
>XM_043256034.1
GTGCTCTCTGTGGAGTCCATGGCGTATTTAAGCGCGAGCGGCAGGGATGAGTGAGCTTCCTGTCAAACCCAGACGTGACAGATCAACTGAAGGCTCTCTGGCGCGTCTCAGAAAGCCACTCCACATCCGTACAACGGGATATCACGGTGATAAGGAGGATACGGTGCCACGTTGGTCGTGTTTCCGATGATCTGTGCGTCGAAGTGGAGTTAAATTGTCGCCTTTGGCTAACTGGCTAAAGCTAGCGAGCTGGCTGCCAGTGGGGAAAAAATTGAAAGCGGAAGAGTGACGTGCTGGTTTACGAAAGCGGAAGTGCTGGAGTGCGGATTTTTCATCTGAAAGGTTCTTCTCAGAAACGGAGGGATGGATGGAGACGAAAGAGCAACTTCTGAAAGGATTCTTCTGGAGCCGTACAAGTATTTGTTACAGCTGCCAGGAAAACAAGTCCGAACAAAACTCTCACAAGCGTTCAACCACTGGCTCAACGTCCCAGACGACAAACTTCAGGTGATCATCGAGGTGACGGAGATGCTGCACAACGCCAGTCTGCTGATCGACGACATCGAGGACAGCTCCAAGCTTCGGCGCGGCTTCCCGGTGGCCCACAGCATCTACGGCGTGCCGTCGGTCATCAACTCGGCCAACTACGTCTACTTCCTGGGCCTGGAGAAGGTGCTGACGCTGGAGCACCCCGAGGCCGTGCACGTCTTCACCCGGCAGCTGCTGGAGCTGCACCGCGGCCAGGGCCTGGACATCCACTGGAGGGACACCTACACCTGCCCGAGCGAGGCCGAGTACCGCGGCATGGTGCTGCAGAAGACCGGCGGCCTCTTCGGCCTCGCCGTGGGCCTCATGCAGCTCTTCTCCCTCTGGAAGCGAGATCTCAAGCCCCTCTTGGACACCCTGGGGCTCTTCTTCCAGATACGGGACGACTACGCCAACCTGAGCTCGACCGAGTACAGCGAGAACAAGAGCTTCTGCGAGGACCTGACGGAGGGCAAGTTCTCGTTCCCCACCATCCACGCCATCTGGTCGCGTCCCGAGAGCACGCAGGTGCAGAACATCCTCCGGCAGCGCACCGAGAACGTGGACATCAAGCGCTACTGCGTGGACTACCTGGAGAAGGTGGGCTCGTTCGCTTACACCCGGAAGACGCTGCTCGACCTGGAGGCCGAAGCCTATCGCTTGATCGCCGAGCTCGGGGGAAATCCTGAACTCGAGGCTCTGGTGCAGCATCTGAGTCGCATGTATAAAGAGCATGAGGGCGGAGCTTTGGAAGAGCTCGGGGGCGGGGCTTCGAACGAGCTAGGGGCGGGGCTGCAGGCAGGCAATCGAAAGAGCTCGGGGGCGGGGCTTCGAAAGAGCTCGGGGGCGGCCAATCAAAGCGATGACTTTGCACTGGGAACAAACCCGACTCCACTGCAGTTGCCTTCAGTTCAAAGTCTGTCGTTTCTGTCTCGTTCACATTTCAAGGCGTTGCAGCTCGCACATGAAGAGTAACAGGACCTCTCGGTATGCGATATCTGGTCAGTATTTATGTCCTGTAATTAGCATCTAACGATGGACGGAGGCTGCttgttgcatttataaatgaaccgggaagaaacatttaaagtttATACCATGTCTGCCGTTTCACCACCAAATCAAAGcaaatgcattgttttgcttaataaataaaataaaggcgtttttttttttttttacttttactttttttattatttaaatattactattacagtatctgtcaaataaaacaaacactttgcattcatacactgcaaaaaggccttcattttattaaaactaaatattgttcTCATTTTGTATTGTACCaacaaacaatttattaaaattgagaattattattattattatattagaacATCTGCTGTACTGATGAGAtttattataagaaataataaaaataaattttatttatttttgctgatgATTTCGGGTGGAAATGTGGCAGATGTTTTTTGGTGAAATGTCTTTCtctgtaataaaataagacaCGAAAGACTTTCCCAAAAGGCATAACGGTGTCCCGTGTGTTTGCGGTGAATCTCACTCGACGCTCGAACACCTCTGAAAGAGTGAACCGAGACGAGATCTCACATGTTTGCCGTTTAAAAGCTCACCTTTTTTCACCTTTGAACAAACAGACGGTGGTGTGTTATTCATTCTGTATATGCAGTTTTAcgttttggatgtttttttgttgttgttgttgttttttaataaccatTCTATGGATAAACACTTTCGTACACTTATCTTAA

Function

symbol description
ggps1 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process. Orthologous to human GGPS1 (geranylgeranyl diphosphate synthase 1).

NR:

description
geranylgeranyl pyrophosphate synthase

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00804 GGPS1; geranylgeranyl diphosphate synthase, type III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256033.1 True 2291 mRNA 0.49 4 20220280 20241921
XM_043256034.1 False 2288 mRNA 0.49 4 20220280 20241921

Neighbor

gene id symbol gene type direction distance location
LOC122356779 egln1a,LOC107690805,LOC107728333,LOC107730384,LOC107557733,LOC107667047,LOC107564238 coding upstream 224660 19979791 ~ 19995620 (+)
LOC122356808 sipa1l2,LOC107667119,LOC102793238 coding upstream 414672 19689750 ~ 19805608 (+)
msh6 msh6,LOC107725009,LOC107588437 coding upstream 714851 19494929 ~ 19505429 (+)
LOC122357010 LOC107754576,LOC107679191,LOC107733337,LOC107585410,LOC107688298,LOC107597633 coding upstream 961917 19249531 ~ 19258363 (+)
zmp:0000001006 NA coding upstream 970891 19247599 ~ 19249389 (+)
gpr137ba gpr137b,LOC100001171,LOC105902257,LOC103372511,LOC100698978,LOC102208596 coding downstream 263502 20505423 ~ 20520084 (+)
LOC122356151 cox5b2,LOC107689371,LOC107689755,LOC105923605,LOC102227912,LOC106952680,LOC108240632 coding downstream 379326 20621247 ~ 20623139 (+)
LOC122356546 LOC107565068 coding downstream 412163 20654084 ~ 20661380 (+)
dntt dntt,LOC107689760,LOC107562388,LOC107689364 coding downstream 454068 20695989 ~ 20725867 (+)
hs3st1l1 hs3st1l1,LOC107720583,LOC107750130,LOC107565063,LOC107686529,LOC107562391,LOC108426770 coding downstream 623064 20864985 ~ 20910740 (+)
G95242 NA non-coding upstream 69062 20112822 ~ 20151218 (+)
LOC122356661 NA non-coding upstream 71008 20145399 ~ 20149272 (+)
G95255 NA non-coding upstream 160574 20059458 ~ 20059706 (+)
G95254 NA non-coding upstream 161396 20057634 ~ 20058884 (+)
G95245 NA non-coding upstream 193392 20025647 ~ 20026888 (+)
G95318 NA non-coding downstream 26553 20268474 ~ 20273467 (+)
G95347 lyst,LOC107730379,LOC107691204,LOC107569426,LOC107689764,LOC107728318 non-coding downstream 74543 20316464 ~ 20316690 (+)
G95352 NA non-coding downstream 104627 20346548 ~ 20346849 (+)
G95326 NA non-coding downstream 107968 20349889 ~ 20415341 (+)
G95355 NA non-coding downstream 111501 20353422 ~ 20482059 (+)
G95239 irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 other upstream 118160 20077285 ~ 20102120 (+)
G95223 NA other upstream 216278 19947530 ~ 20004002 (+)
LOC122356529 LOC107667070,LOC107589360,LOC107719701,LOC107676301,LOC107733333,LOC107725060,LOC107570100 other upstream 552839 19618012 ~ 19667441 (+)
foxn2a foxn2,LOC107588458,LOC107679166,LOC107725033,LOC107667132,LOC107572676,LOC107733332,LOC108441706 other upstream 629996 19555598 ~ 19590284 (+)
lhcgr lhcgr,LOC107688869,LOC107679161,LOC107733338 other upstream 1050253 19156282 ~ 19170027 (+)
G95327 NA other downstream 124304 20366225 ~ 20494176 (+)
dnajc12 dnajc12,LOC107728315,LOC107750135 other downstream 375262 20617183 ~ 20619621 (+)
G95558 NA other downstream 710135 20952056 ~ 20956174 (+)
G95598 adgra1,LOC107689349,LOC107567015,LOC107570923,LOC107750141,LOC107663568 other downstream 936931 21178852 ~ 21180678 (+)
LOC122357027 LOC107567957,LOC107705465,LOC107564371,LOC107574018,LOC107697810,LOC103910014,LOC107573027 other downstream 1254820 21496741 ~ 21506599 (+)

Expression


Co-expression Network