gins1 (gins1,LOC107708421,LOC107727378)


Basic Information

Item Value
gene id gins1
gene name gins1,LOC107708421,LOC107727378
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4929198 ~ 4931710 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256067.1
CGTAGTAACTTTTCGTCTCACGTgatcacaacaacaaaaaaattaccgCGAAAACTGTCTGCGACTGATAATACTTTGTACGTTTTTCTAGCTGAGACTTTATTCTCCCAAAAAGCACCATCTTTAAATTAACGTTACAGACAAATTGACAATGTTTTGCGAAAAGGCAGTCGAGCTTATTAGAGAACTTCATCGGATGGGCGACGGTCAGCTGCCCGCCTTTAATGAAGACGGGATTCGCCAAGTCCTGGAGGAAATGAAGGCTCTGTACGAGCAGAATCAGAGTGATGTgaatGAGGCAAAGACCGAGGGAAAGAGCGAGCTGATCCCATCCATCAAGTTCAGGCACAGCTGCCTGCTGAGAAACCAGCGCTGCATCTCCTCTTACCTTTATGATCGCCTGCTCCGAATCCGTGCTCTCAGGTGGGAGTATGGCAGTGTACTGCCCACAAACATCCGCTTTCATATGTGTGCTGAAGAGATGGAGTGGTTCAATCAGTACAAAAAGTCTTTGGCGACCTATATGAGGTCAATAGGGGGAGAGGAAGGTTTGGACATAACACAGGATATGAAGCCCCCAAAGAGTTTATACATCGAGGTGCGTTGTCTCAAAGACCATGGAGAATTTGAAATCGATGATGGTACTGTCATTCTGTTAAAGAAAAATAGCCAGCACTTTTTACCCAGATGGAAATGCGAGCAGCTCATTCGGCAGGGTGTATTAGAGCATGTCATCTCCTAACGACGAGCGGCTGTATTGTGGATATTTTCCTTCACGTTCATTTAGATTAAAGTTGTCACGAGTAAATTAATCCAATCCGAGAGTTACACAGGTAAAACTTTACTTGGTCACGTTCTGTACAGTGGTACATGGTGCATTTACAACAGTGGCGTCACACTTTCATCTCCCAACAGTTAGCCAGCCCTTTTCACCGAGGTGTACGTCTTAAGAGACATCTGCAACACTGACAATAATTTATATCAAAGTGGACGTTAGTGCATCATGATTGACAATTGTGCAATTACTTAAAAGTATTTGTATCAAAACTGTACATTGCGTGAATACTGTGCTTTTGGTTATTGCACCACAATGGGCATTAAAACTGCAGTaaaaaga

Function

symbol description
gins1 Predicted to be involved in DNA strand elongation involved in mitotic DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of GINS complex. Is expressed in proliferative region. Human ortholog(s) of this gene implicated in immunodeficiency 55. Orthologous to human GINS1 (GINS complex subunit 1).

NR:

description
DNA replication complex GINS protein PSF1

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10732 GINS1, PSF1; GINS complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256067.1 True 1117 mRNA 0.43 7 4929198 4931710

Neighbor

gene id symbol gene type direction distance location
pitx3 pitx3,LOC107699310,LOC107678606,LOC107582478,LOC107708419,LOC107589551 coding upstream 12043 4905566 ~ 4917155 (+)
LOC122356972 h2afy2,LOC107699309,LOC107589552,LOC107708416,LOC105010730 coding upstream 92466 4829737 ~ 4836732 (+)
si:ch211-250c4.3 LOC107699306,LOC107589555,LOC107727387,LOC107708411,LOC107678604,LOC100535981 coding upstream 260182 4643112 ~ 4669016 (+)
atl2 atl2,LOC107586488,LOC107699303,LOC107589558,LOC107708410,LOC107727384,LOC107678587 coding upstream 306399 4612642 ~ 4622799 (+)
dhx57 dhx57,LOC107727356,LOC107708406,LOC107678533,LOC107699277 coding upstream 322109 4595648 ~ 4607089 (+)
aifm2 aifm2,LOC107699314,LOC107708424,LOC107678552 coding downstream 25939 4957649 ~ 4962720 (+)
LOC122356724 LOC107699313,LOC107582481,LOC107727371,LOC107678550 coding downstream 36463 4968173 ~ 4988224 (+)
cpxm1a cpxm1a,LOC107708467,LOC107678553,LOC107567841 coding downstream 123443 5055153 ~ 5063464 (+)
grxcr1b grxcr1,LOC107690195,LOC107733694,LOC107708472 coding downstream 143219 5074929 ~ 5076519 (+)
si:dkey-33c12.4 LOC107690151,LOC107733685,LOC107582527,LOC107708477,LOC107567855,LOC107678591 coding downstream 166864 5098574 ~ 5105932 (+)
G90700 NA non-coding upstream 457454 4471065 ~ 4471744 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding upstream 463330 4459639 ~ 4465868 (+)
LOC122357002 NA non-coding upstream 683408 4244608 ~ 4245790 (+)
LOC122356176 NA non-coding upstream 786696 4137317 ~ 4142502 (+)
G90650 NA non-coding upstream 823727 4105247 ~ 4105471 (+)
G90888 NA non-coding downstream 32992 4964702 ~ 4965015 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding downstream 71700 5003410 ~ 5013662 (+)
G90905 NA non-coding downstream 103649 5035359 ~ 5036116 (+)
G90957 NA non-coding downstream 465785 5397495 ~ 5435571 (+)
G90985 NA non-coding downstream 569932 5501642 ~ 5505510 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other upstream 233356 4561648 ~ 4695842 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 575267 4182499 ~ 4353931 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 1096648 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 1215435 3620406 ~ 3713763 (+)
G90377 NA other upstream 1479181 3449401 ~ 3450017 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 60443 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 246008 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 329326 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 1019507 5951217 ~ 5952517 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other downstream 1050808 5982518 ~ 5986979 (+)

Expression


Co-expression Network