tbxtb (tb,t,LOC107717823,LOC107660241,LOC107564521,LOC107702670,LOC107572025,LOC107750753)


Basic Information

Item Value
gene id tbxtb
gene name tb,t,LOC107717823,LOC107660241,LOC107564521,LOC107702670,LOC107572025,LOC107750753
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23425032 ~ 23429064 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256097.1
CCTGGAGAGTATTTAATTGGGTGCGTCTCTGCAAGTCTTGGGCATTTTCTGACTGGAGAGCTCGGgtagttttgatttttttttttcttgttggaGCCACTTGGATAGCAGAATGGCATCTGAGACCAGCGACTGCTCGGAAAAGAGCGTCCAGTATCGGGTGGATCATTTATTAACTGCTGTGGAGAACGAGCTTCAAGCCGGCAGTGAGAAAGGAGATCCAACAGAAAGGGACCTTAAAGTCAGTTTGGATGAAAATGAACTTTGGAAGAAGTTCAAAGAACTGACCAATGAAATGATAGTGACCAAGAATGGCAGGCGCATGTTCCCAGTGCTGAAGGTGAACGTGTCCGGTCTGGATCCAAACGCCATGTACTCCTTCTTACTGGATTTCGTGGCAGCAGACAAACACAGGTGGAAGTACGTGAACGGCGAATGGGTGCCGGGCGGCAAACCCGAGCCACAAGCGCCGAGCTGCGTCTACATCCATCCGGACTCGCCGAACTTCGGCGCGCACTGGATGAAAAACCCAGTCTCCTTCAGCAAAGTCAAACTTACCAACAAACTGAACGGAGGTGGCCAGattatgCTGAACTCGCTGCACAAGTACGAGCCCCGTATCCATATCGTGAGAGTAGGTGGTCCACAGAGAATGATCACCACTCACTCATTCTCCGAGACGCAATTCATAGCAGTTACTGCCTATCAGAACGAAGAGatTACAGCtctcaaaattaaatataacccATTTGCCAAGGCTTTTCTGGATGCAAAAGaaagaaGTGATCATAAAGACGTAATAGAGGATGTCAGTGAAAGCCAACAGTCTGGTTATTCTCAAcTGAGTAGCTGGTTTCTGCCAGCCACAGGGTCTCTCTGCCCTTCTGCAAACTCTCACGCACAGTTTGGCAGCCCGCTGTCTTTGTCCTCGTCCCATGGCTGTGAACGATACTCTACTTTGAGAAACCACCGATCTACCCCCTACCCCAGCCCTTACTCCCACCGGACGAGCTCTCCCACTGGTTACTCTGATAGCTCCAACTGCCTGTCCATGCTGCCGCCTCATGATAACTGGTCTAGTCTGCAGATGTCCTCTCACTCCAGCGTGCTCCCGATGGGCCACAGCTCTCCCACAAACTCAAACTCCAGTCAGTACACCAGCCTGTGGTCCGTAGGGAACTCTCCCTTGACCCCTGTGTCTCAGACTGGAAGTATAGGTAGCAGTCTGGGCTCCCAGTTCCTCCGAGGATCTGCCGGTCACTACAGCAGCCTGGCTCACCCGGTCACAGCACCCTCTTCTGGCTCTGCTTTATATGACTCCACTACTGAGGTTCACGAGGCTTCACAATATGACAGTTCAGCACATGTACGCCTTCCTACAGCCTGGACCCAAGTCACGTCACCCTCCTTATAGGAGATCCACCCTaaggatg
>XM_043256098.1
CCTGGAGAGTATTTAATTGGGTGCGTCTCTGCAAGTCTTGGGCATTTTCTGACTGGAGAGCTCGGgtagttttgatttttttttttcttgttggaGCCACTTGGATAGCAGAATGGCATCTGAGACCAGCGACTGCTCGGAAAAGAGCGTCCAGTATCGGGTGGATCATTTATTAACTGCTGTGGAGAACGAGCTTCAAGCCGGCAGTGAGAAAGGAGATCCAACAGAAAGGGACCTTAAAGTCAGTTTGGATGAAAATGAACTTTGGAAGAAGTTCAAAGAACTGACCAATGAAATGATAGTGACCAAGAATGGCAGGCGCATGTTCCCAGTGCTGAAGGTGAACGTGTCCGGTCTGGATCCAAACGCCATGTACTCCTTCTTACTGGATTTCGTGGCAGCAGACAAACACAGGTGGAAGTACGTGAACGGCGAATGGGTGCCGGGCGGCAAACCCGAGCCACAAGCGCCGAGCTGCGTCTACATCCATCCGGACTCGCCGAACTTCGGCGCGCACTGGATGAAAAACCCAGTCTCCTTCAGCAAAGTCAAACTTACCAACAAACTGAACGGAGGTGGCCAGattatgCTGAACTCGCTGCACAAGTACGAGCCCCGTATCCATATCGTGAGAGTAGGTGGTCCACAGAGAATGATCACCACTCACTCATTCTCCGAGACGCAATTCATAGCAGTTACTGCCTATCAGAACGAAGAGatTACAGCtctcaaaattaaatataacccATTTGCCAAGGCTTTTCTGGATGCAAAAGaaagaaGTGATCATAAAGACGTAATAGAGGATGTCAGTGAAAGCCAACAGTCTGGTTATTCTCAAcCTGGTTACTCTGATAGCTCCAACTGCCTGTCCATGCTGCCGCCTCATGATAACTGGTCTAGTCTGCAGATGTCCTCTCACTCCAGCGTGCTCCCGATGGGCCACAGCTCTCCCACAAACTCAAACTCCAGTCAGTACACCAGCCTGTGGTCCGTAGGGAACTCTCCCTTGACCCCTGTGTCTCAGACTGGAAGTATAGGTAGCAGTCTGGGCTCCCAGTTCCTCCGAGGATCTGCCGGTCACTACAGCAGCCTGGCTCACCCGGTCACAGCACCCTCTTCTGGCTCTGCTTTATATGACTCCACTACTGAGGTTCACGAGGCTTCACAATATGACAGTTCAGCACATGTACGCCTTCCTACAGCCTGGACCCAAGTCACGTCACCCTCCTTATAGGAGATCCACCCTaaggatg

Function

symbol description
t Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in negative regulation of DNA-binding transcription factor activity; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation. Acts upstream of or within several processes, including animal organ development; chordate embryonic development; and regulation of gene expression. Located in chromatin; cytoplasm; and nucleus. Is expressed in several structures, including egg cylinder; embryo mesenchyme; future spinal cord; heart; and mesoderm. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human TBXT (T-box transcription factor T).
tb Predicted to be a structural constituent of chitin-based cuticle. Predicted to be involved in body morphogenesis and chitin-based cuticle development. Predicted to be located in extracellular matrix. Is expressed in dorsal head epidermis; embryonic dorsal epidermis; embryonic ventral epidermis; lateral head epidermis; and ventral head epidermis.

NR:

description
brachyury protein

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10172 BRA, T; brachyury protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256097.1 True 1433 mRNA 0.51 8 23425032 23429064
XM_043256098.1 False 1256 mRNA 0.50 7 23425032 23429064

Neighbor

gene id symbol gene type direction distance location
pde10a pde10a,LOC107754764,LOC107717825,LOC107564529 coding downstream 8181 23332820 ~ 23416851 (-)
pla2g12b pla2g12b,LOC107702679,LOC107551354,LOC107564523,LOC107660215 coding downstream 95099 23324782 ~ 23329933 (-)
micu1 micu1,LOC107702683,LOC107754762,LOC107717828,LOC107660220 coding downstream 186515 23183915 ~ 23238517 (-)
mrps6 LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615 coding downstream 256129 23167873 ~ 23168903 (-)
LOC122356317 psap,LOC107575616 coding downstream 257941 23157102 ~ 23167091 (-)
prr18 prr18,LOC107750748,LOC107702669,LOC107717824,LOC107660240,LOC107564522 coding upstream 15115 23444179 ~ 23446166 (-)
sft2d1 sft2d1,LOC107660214,LOC102776618 coding upstream 18269 23447333 ~ 23464851 (-)
rps6ka2 rps6ka2,LOC107750746,LOC107717821,LOC107702677 coding upstream 36725 23465789 ~ 23505692 (-)
rnaset2 LOC107750751,LOC107702666,LOC107717820,LOC107566062,LOC107660213 coding upstream 84751 23513815 ~ 23519654 (-)
csmd1a csmd1,LOC107702659,LOC107717843,LOC106589815 coding upstream 204652 23633716 ~ 23995593 (-)
G96117 NA non-coding downstream 246936 23176802 ~ 23178096 (-)
G96108 NA non-coding downstream 270537 23152205 ~ 23154495 (-)
G96061 NA non-coding downstream 395132 23017198 ~ 23029900 (-)
G96060 NA non-coding downstream 417569 23006279 ~ 23007463 (-)
G96044 NA non-coding downstream 590620 22833829 ~ 22834412 (-)
G96254 myom2,LOC107566060,LOC107660212,LOC107702662,LOC107717844,LOC107572023 non-coding upstream 109714 23538778 ~ 23542300 (-)
G96265 NA non-coding upstream 498267 23927331 ~ 23928060 (-)
G96279 NA non-coding upstream 613464 24042528 ~ 24067735 (-)
G96286 NA non-coding upstream 641096 24070160 ~ 24070488 (-)
G96295 NA non-coding upstream 678369 24107433 ~ 24107818 (-)
G96053 NA other downstream 429433 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 601773 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 977021 22371567 ~ 22448011 (-)
G95972 NA other downstream 1002163 22420936 ~ 22422869 (-)
ypel5 ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471 other downstream 1095740 22326705 ~ 22329292 (-)
si:ch211-130h14.4 LOC107660236 other upstream 582 23429646 ~ 23444063 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 913685 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 970059 24399123 ~ 24404715 (-)

Expression


Co-expression Network