LOC122356963 (tbp,LOC107725488,LOC107666436,LOC107601858,LOC107676577,LOC107552942)


Basic Information

Item Value
gene id LOC122356963
gene name tbp,LOC107725488,LOC107666436,LOC107601858,LOC107676577,LOC107552942
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8943435 ~ 8947042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256100.1
CCCATAATGCACCGGAAGCGCATTATTAAGGTCGGCGGAAGTTGTTGTGAAATCTCATGTTTTGCGCGCTCCCTGCGCTTCTGGAAGTATTCTGCACGAACTGATTGCCAGTCTGGGGGATTCTGTAATTAACgGCCTTCTGGAGCTATTGGAGTCTATAGGCTACTCCTGAAATCACCGTTTAGTTGTTTTGCTTCATAAACCGTCAACATGGAGCAGAACAACAGCCTACCTCCTTTCCCTCAAGGGCTGGCATCTCCGCAGGGAGCCATGACGCCTGCCCTGAACATTTTCAGTCCCATGATGCCGTACGGCACGGGTCTTACGCCGCAGCCCGTGCAAAACACCAACAGCTTGTCCCTCCTGGAGGAGCAGCAGcggcagcaacagcagcagcaacaacaggCAGCCTCACAACAGCAGGGTGGGATGGTGGGAGGTTCAGGCCAGACACCGCAGCTCTACCACTCGCAGGTCTCCACCACAACAGCACTGCCAGGCAACACGCCACTTTATACCACACCTCTCACCCCTATGACGCCCATCACTCCCGCCACACCGGCATCAGAGAGCTCTGGCATCGTCCCACAGTTACAgaATATTGTATCTACTGTAAACTTGGGCTGCAAACTTGACTTGAAGACGATAGCACTTCGAGCCAGAAATGCTGAATATAATCCAAAGCGTTTTGCTGCCGTCATCATGAGAATACGAGAACCCAGAACAACAGCGCTCATCTTCAGCTCTGGGAAGATGGTGTGCACAGGAGCGAAAAGTGAGGAACAGTCCCGATTGGCAGCCAGAAAATATGCCAGAGTGGTGCAGAAGTTGGGTTTTCCTGCCAAATTCTTAGACTTCAAAATTCAGAACATGGTTGGCAGCTGCGACGTCAAGTTTCCCATCCGATTAGAAGGCCTGGTGCTTACACACCAGCAGTTTAGCAGCTATGAACCAGAGTTATTTCCGGGATTAATCTACAGAATGATCAAACCCAGAATCGtccttttaatatttgtttcaggAAAAGTTGTACTTACAGGTGCAAAGGTTAGAGGAGAAATTTACGAAGCATTCGAGAACATATACCCTATCCTGAAAGGATTCAGGAAGACTACGTAATCTTGTTCTGTTATCGCCGGTATATTTACATCCTGAGCCCACTGGTATGTCTGGGGTGACCGActcagttttatttacttttgtaagCCTGTAAATATGAAGGACACATTTTCTTCACTCAGAAAGTGAACCGATTTGAGGGTTaaagttttaacttttttttttccacctacCACTTGGTtttcaaaatactgttttaactATGTCCggacattttaatgttttgaattcttttatggttttaaaattgttaatttcATACTTTTTACACATTCCCTTTATTAGCagattttatgtattattgttgCATTACTGATTGTCAGTGAGAAGAATTGGTCCGTAGCAAGCAATGGCGATGTTGATCAGCGCAAGGGAACCGTTTTGTTTGGAGGAGtgcattttgattgtttttcaaCAAAGCTTTGCAAACAAGTTTGTggatcaatttttttttttttgttgaagttGTCATGTGGATTTGGCCTTTAAGTTCCAGTTTTCAAATAAGAATGGTTGATGGATCTAATGATTTAATTGCCATGTCATTGTTCGATGACTGTAGATCCCCTGATAGCCCCATGTAAAGCACTGACAtcttaatttaatactttttgctATGTAACTAATTTACTTTGCtacattgcaaataaatatgtttggCAACTTCA

Function

symbol description
tbp Enables DNA binding activity. Involved in gastrulation and mRNA catabolic process. Acts upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in late onset Parkinson's disease; schizophrenia; spinocerebellar ataxia type 17; and type 1 diabetes mellitus. Orthologous to human TBP (TATA-box binding protein).

NR:

description
PREDICTED: TATA-box-binding protein

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0007369 gastrulation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256100.1 True 1787 mRNA 0.44 8 8943435 8947042

Neighbor

gene id symbol gene type direction distance location
rhoua rhoua,LOC107601857,LOC107676561,LOC107666438,LOC107725498,LOC107743528,LOC107552943 coding downstream 3507 8932964 ~ 8939928 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC107676603 coding downstream 26373 8908815 ~ 8917062 (-)
urb2 urb2,LOC107725468,LOC107666477,LOC107552917 coding downstream 50630 8878521 ~ 8892805 (-)
galnt2 galnt2,LOC107743534,LOC107725470,LOC107666462,LOC107676591 coding downstream 69434 8809451 ~ 8874001 (-)
cog2 cog2,LOC107601846,LOC107725477,LOC107666500,LOC107743537,LOC107676580,LOC107552949 coding downstream 152566 8782998 ~ 8790869 (-)
cep68 LOC107725463,LOC107666566,LOC107601859,LOC107743522,LOC107676572,LOC107552940 coding upstream 10231 8957273 ~ 8963623 (-)
slc1a4 slc1a4,LOC107725464,LOC107552941 coding upstream 17106 8964148 ~ 8972341 (-)
si:ch211-217g15.3 LOC107676570,LOC107743520,LOC107725431 coding upstream 81309 9028351 ~ 9029769 (-)
znf511 znf511,LOC107725486,LOC107666508 coding upstream 122439 9069481 ~ 9072336 (-)
erlin1 erlin1,LOC107725471,LOC107666491,LOC107601865,LOC107743516,LOC107676597,LOC108426813 coding upstream 148659 9095701 ~ 9102704 (-)
G92205 pgbd5,LOC107601786,LOC107725485,LOC107552948,LOC107743535 non-coding downstream 140029 8796871 ~ 8803406 (-)
G92195 sf3b5,LOC107601807 non-coding downstream 203346 8738975 ~ 8740089 (-)
G92021 pcnxl2,LOC107725461,LOC107601842,LOC107666362,LOC107743596,LOC107676602 non-coding downstream 265049 8667496 ~ 8678386 (-)
G92235 NA non-coding upstream 28043 8975085 ~ 8975334 (-)
G92251 echs1,LOC107743519,LOC107725439,LOC107601864,LOC107676592,LOC107666378 non-coding upstream 74768 9021810 ~ 9022207 (-)
G92263 NA non-coding upstream 161028 9108070 ~ 9108361 (-)
G92264 NA non-coding upstream 165253 9112295 ~ 9112589 (-)
G92265 NA non-coding upstream 165865 9112907 ~ 9113298 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 895534 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 1127056 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 2443862 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 2547009 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 2716163 6220175 ~ 6227272 (-)
G92267 NA other upstream 168051 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1227371 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1685208 10632250 ~ 10634566 (-)
G92819 NA other upstream 1977902 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2253510 11200552 ~ 11218985 (-)

Expression


Co-expression Network