slc24a3 (slc24a3,LOC107718828,LOC107693448,LOC107673935,LOC107716313)


Basic Information

Item Value
gene id slc24a3
gene name slc24a3,LOC107718828,LOC107693448,LOC107673935,LOC107716313
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24891953 ~ 24951267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256104.1
tctctctctctctctctctctctctctctttctgactGCGTTCACTTCCTTACTTTCaatcctccctccctccctctcgcGCTCTCTCCTCCTCTACATCCTCGATCTCTCAGCAGCAGCAGTTTGTGTCCTGAGAGAACTGGCACCAAACTGACGCATCCATGGGGCGCGCGCAGCATCTTTATTTCACCACACTACAATTTGAAGTCATATAGGGGGAAATATTCGAGTCAACGCAGCAAACACACTAGAGCCGTTCGGCGTCTCATCTTCCGGCTTAAAACTCTCAGTCGCACCGTATCTGTTTGCGTTTGTGACATTTGTAGCTGTGTTGAGCTGCGGTGATGGATGGGGACGCGTGCGTTCGCGTGTGGACTCGACCGCTGCAAGTGATGCTCCAGCAGAAGAAGATCAAAGCGCGGAGGAAAAAGCGCAAGGAGTTGTTCGGAGGACAGATGTGCTTCATGGGGCTGCTGCTGGTGGCGGTGTCCGGCTTGTCCAGTTTGGCCGAGAATTCCGGTTATAGCATCTCCAGTCTCTCCGCTGAAGATAGTGCAAGGTGGGAAAGCCGCAGGTTGCTGCAGGACTTTGACATTGACAGCAACTACACTGATGAAGTGCAGGTTGGGCCCAATGCTGAAAAGAACTGCACACCACCTGGTATACACGAGTTCCCTGATGATATCTTCACCAACCAGGAGCGAATGGAGGGGGCCGTAGCCTTGCACGTTCTGTGTgccatgtatatgttttatgcGCTGGCATTGGTGTGTGATGACTACTTTGTTCCCTCTCTGGAGAAGATCTGTGAGCGCCTCCATCTCAGTGAGGATGTAGCAGGAGCCACATTCATGGCAGCAGGAAGTTCAGCTCCTGAACTCTTCACCTCAGTCATAGGTGTATTTATCACCAAAGGAGATGTGGGAGTGGGCACAATCGTGGGTTCTGCTGTCTTCAATATCCTCTGTATCATCGGAGTGTGTGGGATCTTTACTGCACAGGCAGTACGGCTCTCGTGTTGGACGTTAATGAGAGACTCGGTGTATTACACTATCGCTGTGACCACTCTGATTGTGttcatCTATGATGAAAAGGTGACATGGTGGGAATCGCTCATCCTAATAgtactgtacatattttacattatattaatgaaATTTAACTCGCGGGTGGTTCATTACATCGAACGGCGGAAAAAGAACTCTGCAAATCTGGGTAACGGCACAGCAAGCAACACAGACATCGACGATGGGTGCGATGCCACTGTCGTGCTGCTTAAGAAAGCAAATTTTCACAGGAAGCCATCAGTGCTGATGGTGGACGAGCTCTTGTCTGCATACCCTCATCAGCTGTCCTTCTCTGAGGCCGGGATGAGAATCATGATCACCAGCCACTTCTCTCCTCGCACACGCCTCACAATGGCCTCCAGAATGCTTATCACAGAGAGGCAGCGTCTGATAAACAGTCGCTTCAGTAACGGGGACTCAGAGGTGACAGTAAAGATCCCAGGAAAGCGCGGGGTGGAGAATGGGCTGGCAGGACCGGACCGAGGCCTGAACGGGCGAAAGGGGGGTCACCATGACGACGACAGGGGAGGAGCTGAAGCTGGCACTGACACTGAAAACGAGAATGAGGACAATGAAAACAATGAGAAcgatgaggaggaagaggaggaagatgacAACGAAGGACCCTATGTACCATATCGCTGCCCCGGTGGGGCCTTAAATAAGCTAAAGTGGCTGCTGGCCTGGCCACTGAGTCTGCTGCTGTTCTTCACCGTGCCCAACTGTTCCACTCCTCGCTGGGAGCGCTGGTATATGGTCTCGTTTATCAGCTCGACCCTCTGGATTGCTTTCTTCTCTTACATCATGGTTTGGATGGTCACAGTGATCGGTTACACTATGGGCATCCCTGATGTCATCATGGGCATCACTTTCTTGGCTGCTGGGACCAGCGTTCCTGACTGCTTGGCCAGTTTAATTGTTGCACGGCAAGGAATGGGTGACATGGCTGTGTCTAACTCTATCGGTAGTAACGTGTTTGATATCCTGATTGGGCTTGGTCTGCCCTGGACCCTCCAGACTTTGGCCATTGACTATGGCTCCACAATTCACCTGAACAGTAAAGGTTTGATTTTCTCAGTTGGGCTGCTGCTAGCATCTGTGTTTCTCACGGTTCTCGGTGTACATTTGAACAAGTGGAAGCTGGACAAGCGTTTGGGTTTCATTTGTTTGCTGATGTACGCTGTCTTCCTGTGTTTCTCCATCCTCATCGAGTTTAACATATTCACCTTCGTCAATCTGCCCACCTGCCGCGAGGAATGAGACGGCTCCTTTTCCCGGCCCTCCCTCCTTGACCTTGTGAGGACAACGGCACAAGTCCTCGATCAGATGCAGACTGGCTCTTGTTCTAAAGGAATACTTATTTATTGATCTAGCTGATCCTCTATTgatcctctctttttctttccaatGGGTGCAATATTAACAGAGTCTCTGGATCTGTGGTGTTacaagaggagagagaggatgTGTGCGAAGAATGGTCCTGTTGACCGATATATAGACTGTTCTAACGGGACAGGAACGTGGTAAATGATGACTACTGCCTGGTTTGAtgtgaatactttttttttcgaaatattttgcatattacatatttaaagaatatgatgtaaatgtattttatgatggaatttgttttattagctGCTAATTTACTGAAGAAGAGGCTGGACTTATTAATGTCTGTAAAAATAGAGATTTACGAGGGTTCGTTATTTTGCTGAAAGGTACTGGTGACCTCTAGGAAATACTTGTATACAGTCCTCTTTATAATTTGGGCATTACCAAGTCGTCACCTTCATAGTACAAGATCAATCTGGACGTCAGGGTCATTAGTGTCTACTTTTTTCAGATGAGAATATGTTTACGGTGCAGAGGAGGTAATAAGATCAAATTTTAGTCAAAAAAGAGATAAACAGCGGGCAATTGTTTGCACCTGTGTGGAAACACTTGTTGGAACACTTCTACCAACATATTTATGTTCAATGAGACAATGTTCTTGTGTGAAATATGGGTTTCTATAGATGTGTTTCTgaattttcttttgtctttaacACTCTGTATATACTGAAACAgagaaaggtttatttattatttattgaaaactATTTATGCACATTACTTTCCTATGACGTACTGAAACAAAACCAACCCACAGCTGTCCCAAAGAAGAGACCGTTCTGGAGTTTCACCCAGGCTACGCCGTTATGTCCTTCAGAGCTTACGTGTCAGCCTTTTCTACTGGATTCCTTCTCCTTCATCTCTGAATATTATGCACCCTTTTAGATGCACCTTTGACTTGATGCGTAAAACAGTTTCTACTATTTGATATCGGTGTGACATGACATTAGAGGTAACTGTAAAGATTTTTTGAACACTCAAAACTTTGGCAGGCAAGTAAGggaaaatatatagatagatatatattttatacttaacTGTTTTGACATTTAAGATCGGTCCATTCCCTTTTTGGAGTGAATGGAGTGAGTGAGCCTCAAACCTAAGAAGCTGATTAGCAGGAACGTGTCCTGGTAAAATGAAGCTAACGTTGATAAGACTGTTTCAAAGTCAAAACGTAGATGCTCTAGAAAAGGTCAAGTCATTTTTCTCTTAGCATGCCGCTCTTATCTTAGAGTTTATCCAGGAATTTTGGAAGAAATCTTCTCAGCAGAACAAGGATCAGAATTCATTTCTAAGGATGCAGTTAATGATATGGATTTTTCAGGAGTTCTTTATGCTGATGTGTCCGGGGCTCATTTCTTGCCCTTCTTTTCGAAGGACTATTTAAATACTTTGTTTTGTATGCCTCTGGTTCTAGGGATTTGAAAAAGACACTACCATAATGCATCACAGCTGTAAGCTTCTAACTGTGGCACAATATGTGGATGAGTGGTCTTCTTCTCCTAACTGAGGTTTTTTAGTGAGCTGACAAAGTAGCGATTCTGTGGACTGTTTTAGTCTAGTTAGAGATTTCATGCAGGTTTTCTAGTCTGAAGGCACATTGCAGggatattttgtgttttatgcacTGGTTAATACTGGGTGTCTAAttgtttgtcatattttaagAATAGAATTTAGGTGACTTAGAAACATATCTGGAAGAGTATTGCGGCAAAGTATTTTTTATCACAAAAGTAACTTTGTATTTTGTAACgcaaaatgtttagaaatgttttctgcttttaaaagtcTGTAGAGTGTGCTTCAAGTGAATCTGCATATTTATTCTTTAGATCATAAAACTAATTTGTCAGCTTACCGTCAGAGTACTTTTAGCATGCTTAAAATCAAAGGTCACACTTTGTAGGGCATTCTTTTCAACAatgtacaaaagaaaaaaagaaaatttgtcCCTAGTTTGACAgaatatatttgcaaatatgaacattttgttttctgtatcaCTCATAGTAGACATTGAGGCCTAGTTTACTTTCCGAAAATGCAACAGCAGGTCTAAGGTTTAAGCAATGTGATATTCCTGATAAATATAAGCTAGGTGTAATCCAAGTAGAGCGTACGAGCTGTGTTTGGATGCTGAAAATTGTTATTGgctattattttcttcttttcaaagCAGGGTATTATAAGAAAGACGTCGGGAAGGCAGGGTTTAATGAAAGTTTTGTTCATGAAATGCAATAATGTTTAGATGAATTAATTACTGTGTTTGCGTTTTTTGTAAATTCTAAACATGACACATCACAATCTttaaaacgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattctacgtaaatatttcagtaaggTTTAATAGAGTTTGTGCACTCTATGCTCGATATTATGGATAGTAAAAAGAGGCAGAGATGCAGCTAAATTGGCTTTTACTGCAAAATTctccaaaatatataaatactgctGCTTACAGATTGTGGGACATCAATGCCTATGATTATGGTTGCAAAATCAGCCGTACTAATTTAcagattcagtgtttttaacatACTGATGACTGATGACTGATTAACATACTATTCGGTCCTCTTCACTTCCGAAAATCTAAGCGCTGCTGTTCATttgtatgcataaatataataattctaatcATAATACTGAGGGCATGCACAACCAATTAGCCCACAATTAGAGAAACTTCCCTCAGATTTCCTTTTCTTGTCTGCTGATATTTCTTCATGGATTCaggcatattttaataaaaatgtgacttttacAGGGTGATGCATTGCTGATGtacataattatacatacatgaaaatgtcttcatatttttgtctttgcctGCATATCCGTTGACTATATTTTCATACAGTAGATACTGTACAATGTTTGGgtcctttatttgtttattttatttttgttgttgttgtgttgaaGGTTTGATTAAACACCCTTGGTTTGCTAAATCGCATgggatattttaatataaggaGTTATTTATGTTCATTACTATTACACATTGTTGAGCACTGGATGGACAGCAGTGGAATTAGACCTCTTAGattattgcatgttttctttgttttatttttatttcaatggaAAACTGCTGGGCTTTTGATTCTCCAATGAAAGCATAAAATAGATATTTCATTCAAAGTAACTGATGTCTTCTGCATTTCAGGAGTCATAAAAAAGAATGGTGGTTGGCTTTATGTactaaaattttttttgttcaggtgTTTCAGTTGTATATCAGAGTACATTTTTGCTACTtgagcataataaaaatgatctttgCTGAGGTAAA

Function

symbol description
slc24a3 Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC24A3 (solute carrier family 24 member 3).

NR:

description
sodium/potassium/calcium exchanger 3-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13751 SLC24A3, NCKX3; solute carrier family 24 (sodium/potassium/calcium exchanger), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256104.1 True 5847 mRNA 0.41 17 24891953 24951267

Neighbor

gene id symbol gene type direction distance location
si:dkey-187a12.4 si:dkey-187a12.4,LOC107718844,LOC107695884,LOC107588745,LOC107716288,LOC107673937,LOC107585337 coding downstream 1092 24888115 ~ 24890861 (-)
rin2a LOC107585336,LOC107716314,LOC107588678,LOC107718829 coding downstream 4631 24857219 ~ 24887322 (-)
slc17a5 slc17a5,LOC107588676,LOC107673875,LOC107585335,LOC107693696,LOC107718830 coding downstream 35719 24851403 ~ 24856234 (-)
eef1a1a eef1a1a,LOC107693767,LOC107716315,LOC107588677,LOC107718831,LOC107673933,LOC108258313,LOC107585334 coding downstream 40653 24846449 ~ 24851300 (-)
cgasa NA coding downstream 46318 24842270 ~ 24845635 (-)
soul2 LOC107695801,LOC107718843,LOC107588746,LOC107716303,LOC107585342,LOC107673856 coding upstream 13587 24964854 ~ 24966345 (-)
G96436 NA non-coding downstream 174991 24714219 ~ 24716962 (-)
G96435 rims1,LOC107588670,LOC107718836 non-coding downstream 178495 24710744 ~ 24713458 (-)
G96415 NA non-coding downstream 216007 24630553 ~ 24675946 (-)
LOC122357044 NA non-coding downstream 227028 24652927 ~ 24664925 (-)
G96411 NA non-coding downstream 285577 24606130 ~ 24606376 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other downstream 487238 24399123 ~ 24404715 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other downstream 547296 24342749 ~ 24344657 (-)
si:ch211-130h14.4 LOC107660236 other downstream 1447890 23429646 ~ 23444063 (-)
G96053 NA other downstream 1896354 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 2068694 22821981 ~ 22823259 (-)

Expression


Co-expression Network