mtrf1l (mtrf1l,LOC107733345,LOC107724593,LOC107585450)


Basic Information

Item Value
gene id mtrf1l
gene name mtrf1l,LOC107733345,LOC107724593,LOC107585450
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18812271 ~ 18816117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256120.1
CGGAAAAAGAAGCTTCGTACAGTCTCTGGGTACATGTGAATGTTGCGGTTCATAGATGTCAACTGTAGGCTGCAATAAAGTTACTATGGTTGGAAGCCCGTTTGCTTGGTAAATGCTTGCTTTTGCCTTCAATCGCTCACTTTAAATACAGCACTTGAGGGGAGATGGCTGCGGTCTGCTTTAATAAGAGCCTTTCATGCGCAGCCAGGCAGCTGCTGAATGCGACACCGTTCAGGACAATCAAAACACACTTTAGAGGATCAGTATGCAGATGTTTAGCCATTCACAGGACTGTTAACGGCACAATAGCACACTCTAAACGAGCCTTTCAGACATCCCGCTCCGCGATGCTCACTAAAATACTGTCCGTGGAGGAGGTCTTCAACAAGAAGTCTTTGCACGACTACCTGAAGAAGAAGGAAACGGAGTATAACGCGTGCTTGCAGTCCCTCAGTGCTGAAAACCAAACGCTGGACGACGAGGACGTGAAAATGAAAAGGACTAACCTCTCTGCGCTCGGGCCTTTGGTCCAGAATATCAGAGAgttagaggagaaacagaggGAGCTGGAGGACACGAGGGACTTGTTGAAAGATAACGACCCAGAATTACACGAGCTTGCGGAGTCGGAGAAGGAAGCCTGTCTGGCAGACATTCAGGAGCTCAAACAAAAGATTTTATCTCTTCTGATCCCAGAGGAGGAATCAGACCTGAGTGATCTGGTCCTAGAGGTCACCGCTGGGGTCGGAGGTCAAGAAGCCATGCTCTTCACCGCAGAGATCTTCGATATGTATCAGAACTTCGCTGCTTTCCATGGCTGGAGCTTCGGCTTCCTGGAGGTGGCGTCCAGCGAGCTAGGGGGCGTCCGACGTGCAGCAGCCAGCATCAGTGGTCCGCTCAGCTATAAAAAGTTAAAGTTCGAAGCTGGGGTCCATCGTGTCCAGAGGGTCCCGAAAACAGAGAGCAAAGGTCGCGTGCACACCAGCACCATGACGGTGGCCGTCCTTCCCCAGCCCACCGAGGTACACAAAACTACACAAGTGAATGGTATTATTAATCGAATGAAATCGCATTGCACTTTCTTTTTAACCGCACAGATCTCATTTACCATCAACCCTAAAGATCTGAGGATCGAGACGAAGAGGGCCAGCGGTGCGGGAGGACAGCACGTGAACACCACCGACAGCGCCGTGAGGATCATGCATCTCCCCACAGGCACAGTGGCTGAATGTCAGCAGGAACGCTCCCAGATCAAGAACAAAGAGACAGCCATGACGTTACTGCGAGCCAAACTTTACAGCGCCCAGCTGGAGGAGGAGACCAGTAAGAGATACCAGGCTCGAAAACTACAGATCGGCACCAAAGGCAGATCAGAGAAGATCAGGACTTATAACTTCTCTCAGGACCGGATCACGGATCACAGGATTGGAAAAACCATTCACGACGTGCATGGATTTTTACAAGGAGAGGAACTGCTGGAAGAGATGATCGTGTTTTTGCAACAGTTTTCCGAACAGGAATCGCTTATGGACCTCCTTGAAGACGATGATCAGAATCAGTAGTTGTTTGCTGGAAATAAAGAGATGTGTAAAAGTTTGGCTTTGTGGGTGTGAGACTGAAGCACGGGCgtctgagtaaaaaaaaaaagagcgtaGTGTGTCTCACTATCCCTCTGAAGAGTTTCTCAAACACTCTTTGCTTTCTCTTGAGCTTTTGCACAGTGGTGTGAAATGCTTTGGgggctgtttgttttgttttcagcgGCTGGTTTCCAACAGTGTAAGAAACgctgtttaaattttatttttattttctttagcaaGTCAGAAAAGTGCTATTTCTAGCTCATAAGTGATTCATATTTTGGAATCGAATGTAACGCGAAtgtccaaataaataaatatttatgacttCTTCGGACCTGAAAA
>XM_043256121.1
CGGAAAAAGAAGCTTCGTACAGTCTCTGGGTACATGTGAATGTTGCGGTTCATAGATGTCAACTGTAGGCTGCAATAAAGTTACTATGGTTGGAAGCCCGTTTGCTTGGTAAATGCTTGCTTTTGCCTTCAATCGCTCACTTTAAATACAGCACTTGAGGGGAGATGGCTGCGGTCTGCTTTAATAAGAGCCTTTCATGCGCAGCCAGGCAGCTGCTGAATGCGACACCGTTCAGGACAATCAAAACACACTTTAGAGGATCAGTATGCAGATGTTTAGCCATTCACAGGACTGTTAACGGCACAATAGCACACTCTAAACGAGCCTTTCAGACATCCCGCTCCGCGATGCTCACTAAAATACTGTCCGTGGAGGAGGTCTTCAACAAGAAGTCTTTGCACGACTACCTGAAGAAGAAGGAAACGGAGTATAACGCGTGCTTGCAGTCCCTCAGTGCTGAAAACCAAACGCTGGACGACGAGGACGTGAAAATGAAAAGGACTAACCTCTCTGCGCTCGGGCCTTTGGTCCAGAATATCAGAGAgttagaggagaaacagaggGAGCTGGAGGACACGAGGGACTTGTTGAAAGATAACGACCCAGAATTACACGAGCTTGCGGAGTCGGAGAAGGAAGCCTGTCTGGCAGACATTCAGGAGCTCAAACAAAAGATTTTATCTCTTCTGATCCCAGAGGAGGAATCAGACCTGAGTGATCTGGTCCTAGAGGTCACCGCTGGGGTCGGAGGTCAAGAAGCCATGCTCTTCACCGCAGAGATCTTCGATATGTATCAGAACTTCGCTGCTTTCCATGGCTGGAGCTTCGGCTTCCTGGAGGTGGCGTCCAGCGAGCTAGGGGGCGTCCGACGTGCAGCAGCCAGCATCAGTGGTCCGCTCAGCTATAAAAAGTTAAAGTTCGAAGCTGGGGTCCATCGTGTCCAGAGGGTCCCGAAAACAGAGAGCAAAGGTCGCGTGCACACCAGCACCATGACGGTGGCCGTCCTTCCCCAGCCCACCGAGATCTCATTTACCATCAACCCTAAAGATCTGAGGATCGAGACGAAGAGGGCCAGCGGTGCGGGAGGACAGCACGTGAACACCACCGACAGCGCCGTGAGGATCATGCATCTCCCCACAGGCACAGTGGCTGAATGTCAGCAGGAACGCTCCCAGATCAAGAACAAAGAGACAGCCATGACGTTACTGCGAGCCAAACTTTACAGCGCCCAGCTGGAGGAGGAGACCAGTAAGAGATACCAGGCTCGAAAACTACAGATCGGCACCAAAGGCAGATCAGAGAAGATCAGGACTTATAACTTCTCTCAGGACCGGATCACGGATCACAGGATTGGAAAAACCATTCACGACGTGCATGGATTTTTACAAGGAGAGGAACTGCTGGAAGAGATGATCGTGTTTTTGCAACAGTTTTCCGAACAGGAATCGCTTATGGACCTCCTTGAAGACGATGATCAGAATCAGTAGTTGTTTGCTGGAAATAAAGAGATGTGTAAAAGTTTGGCTTTGTGGGTGTGAGACTGAAGCACGGGCgtctgagtaaaaaaaaaaagagcgtaGTGTGTCTCACTATCCCTCTGAAGAGTTTCTCAAACACTCTTTGCTTTCTCTTGAGCTTTTGCACAGTGGTGTGAAATGCTTTGGgggctgtttgttttgttttcagcgGCTGGTTTCCAACAGTGTAAGAAACgctgtttaaattttatttttattttctttagcaaGTCAGAAAAGTGCTATTTCTAGCTCATAAGTGATTCATATTTTGGAATCGAATGTAACGCGAAtgtccaaataaataaatatttatgacttCTTCGGACCTGAAAA

Function

symbol description
mtrf1l Predicted to enable translation release factor activity. Predicted to be involved in mitochondrial translational termination. Predicted to act upstream of or within translational termination. Predicted to be active in mitochondrion. Orthologous to human MTRF1L (mitochondrial translation release factor 1 like).

NR:

description
peptide chain release factor 1-like, mitochondrial

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function
GO:0003747 translation release factor activity molecular_function

KEGG:

id description
K02835 prfA, MTRF1, MRF1; peptide chain release factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256120.1 True 1928 mRNA 0.48 6 18812271 18816117
XM_043256121.1 False 1853 mRNA 0.48 7 18812271 18816117

Neighbor

gene id symbol gene type direction distance location
LOC122356089 LOC107724591,LOC107679149,LOC107655560,LOC107733355,LOC571446 coding upstream 35337 18773187 ~ 18776934 (+)
tmem63ba LOC107679181,LOC107733349,LOC107655531 coding upstream 40448 18744006 ~ 18771823 (+)
LOC122356945 marcksl1a,LOC107597644,LOC107679202,LOC107734268,LOC107724621,LOC107655702,LOC107585455 coding upstream 440918 18368314 ~ 18371353 (+)
LOC122356838 LOC107597643,LOC107679211,LOC107724630 coding upstream 544437 18264627 ~ 18267834 (+)
LOC122356837 LOC107597643,LOC107679211,LOC107724630,LOC107679207 coding upstream 550991 18260197 ~ 18261280 (+)
fbxo5 LOC107679190,LOC107724586,LOC107655774,LOC107733324,LOC107578492,LOC107578230,LOC107585449 coding downstream 46 18816163 ~ 18819554 (+)
anapc1 anapc1,LOC107733344 coding downstream 22507 18838624 ~ 18895972 (+)
acoxl acoxl,LOC107724570 coding downstream 244862 19060979 ~ 19099036 (+)
mertka mertk,mertka,LOC107724611,LOC107733327,LOC107585446 coding downstream 355247 19171364 ~ 19207995 (+)
tmem87b LOC107597636,LOC107688162,LOC107585411,LOC107679197,LOC107724612,LOC107733328 coding downstream 392723 19208840 ~ 19219501 (+)
G94816 NA non-coding upstream 26822 18780401 ~ 18785449 (+)
G94787 NA non-coding upstream 285640 18526402 ~ 18526631 (+)
G94785 NA non-coding upstream 292360 18519640 ~ 18519911 (+)
G94753 NA non-coding upstream 437098 18373563 ~ 18375173 (+)
G94750 NA non-coding upstream 541668 18263524 ~ 18270603 (+)
G94883 NA non-coding downstream 13199 18829316 ~ 18829539 (+)
G94913 NA non-coding downstream 84501 18900618 ~ 18956194 (+)
G94914 NA non-coding downstream 96781 18912898 ~ 18913964 (+)
G94967 NA non-coding downstream 291273 19107390 ~ 19107788 (+)
G94974 NA non-coding downstream 295705 19111822 ~ 19112285 (+)
G94776 NA other upstream 180553 18545352 ~ 18631718 (+)
G94789 LOC107563058 other upstream 274828 18536892 ~ 18537443 (+)
G94760 NA other upstream 372688 18439173 ~ 18439583 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other upstream 1236333 17560296 ~ 17575938 (+)
G94378 capn1a,LOC107549131,LOC107676389,LOC107586085,LOC107679188,LOC107734280 other upstream 2206888 16597781 ~ 16605383 (+)
lhcgr lhcgr,LOC107688869,LOC107679161,LOC107733338 other downstream 340165 19156282 ~ 19170027 (+)
foxn2a foxn2,LOC107588458,LOC107679166,LOC107725033,LOC107667132,LOC107572676,LOC107733332,LOC108441706 other downstream 739481 19555598 ~ 19590284 (+)
LOC122356529 LOC107667070,LOC107589360,LOC107719701,LOC107676301,LOC107733333,LOC107725060,LOC107570100 other downstream 801895 19618012 ~ 19667441 (+)
G95223 NA other downstream 1131413 19947530 ~ 20004002 (+)
G95239 irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 other downstream 1261168 20077285 ~ 20102120 (+)

Expression


Co-expression Network