cdc42ep3 (cdc42ep3,LOC107549143,LOC107665567,LOC107676396,LOC107747292,LOC107719229,LOC107586113)


Basic Information

Item Value
gene id cdc42ep3
gene name cdc42ep3,LOC107549143,LOC107665567,LOC107676396,LOC107747292,LOC107719229,LOC107586113
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16381358 ~ 16390115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256130.1
AGCTATTCCGTGCACCACAAAAATAGTGCTTGTCACACCAAGCTCACTCGACTGTTAATTCATTTCCATTTGTTAGCATGTTGCCAGTGGCGTGATACTGTGATACTCAAGCATAACATCCATAGCACACGCAAATGTTCTAATTCTAAGTCTTTTTTGCATTAAACCAGGCAAACTTTGATTCAACATTTCTCTTGCTTTAACATCCATCttgaatttttttcagtgtgcatATCTGCATATCAGTTCAAGCATACATTCGATGTTGCCCCATAAGTTATATGGCATATAATGTCTTCTGTCCAGGTAAGAAGCTCATTTATAGCATTTGGAACAGAGCTTATGccaatctttctctctctctcacacatacacccACACGAGACTCGCTGCACCCCCTCCTAATCCTGTCAAACGTGAGCTCACTGCAGAGCACTATATGTTGCCAAGGAAACCTATTTTAGGTTGAGGGTGACGAGAAGCTCCACAGAGGTTTACAGTGCAACTGCAaagagaaacagcttttctctaATAATCAAGAACATTCTATATGCTCATCTTTCTATGTATCggtctgtctttctttccaaTAAGGTTGCATTTCACCTCTCAGATGTTTTAATGGTGTCTGCTAAACGCTGAGCCAACAAATGAGTCAGAGATGCTGAAGTCGGCAGAAATAAATTGCAGAATGACAAAATAGAGCGGGATCCAAAGAAGGCAAATGAATGCGAGAACTGTGATCGAAAGGAAAaacgtgtgagagagagtgcgAGAAGGGAGGTGGGGAGTGACAAGACgaacagagagagtgagagagggacGTTGTATTTCTTCCAGTCTGTTTTGGAAGGGAAGGACTTTGACGTTCAGCAGCTGGGAAGCACAGTAGGAGAGACTCCACACTCCACATTCATTTTCCTCCTCCCTTGAGCGAGCACTGTCTGTCTCTCCAGGAAATAGTGCCACAGCTCCGGCAGGTCGGGACTGCAGAAGACCAGAGAATTGGATTTCAACGCCACCTTCTCCCCAGACAGGCAGGGACAGGTGCTGCAGGCTGAGAAAGGAGGAGCAAAGCAAAGCGGAGACACGCCGCAGCGCTTCAGAGGAGGAATCCTGAAACAGCTGTCCAGCAGACGTCCTGCCTGTGAGAAATAAACCCTCAagggcagaaagagagagagtgagagagaagacGAAAACGGCAACACGCTGCACCACCCAGAAGCTGACTAACAGTTTGGGTCAAAGCACCTCCGGAACGACAACCACAGAGTGAAGAAAAGAAGGACATTCATCTGCAAAGACACCGGAGCAGGTAAAGGACATTCGAGCTGGATTATCTACAGTGAAGATTGAggaagcatttaaaacagctgctCTCTGAGAATGTAACCCCTGCACCTCTTTTTTGCGAGACTCCAGCGAGACTCCAGCAAGTTTATCGCACATCCGAGGAGATCTAAACTTCCAGAGCGTTCCTCGTTCCTCTTCATAACCGCTGGACTCTATTGCAGAGATGCCTGCCAAAACGCCCATCTACCTGAAATCCAACTACAGtaaaaagggaaagaaatgcCGCCTGAGGGACATTTTATCCCCGGATATGATCAGCCCTCCTCTCGGGGACTTTCGACACACTATCCACATCGGAAAGGGCGGAGAGTGCGATGCCTTCGGTGACATGTCGTTCCTGCAAGGAAATTTTGAGCTTCTACCAGGGAAAGGTGGCCGTATTCGGCCTCAATATGGCATCCATGGGGAGTTCACAAGAGCTAACAGCGCCTCGGATGCGTCTTGTGTTGAAACTCCATCGCCGGTCCTGAAGAACGCAATCTCGCTACCAACTATCGGGGGCAGCCAAGCACTGACTCTGCCTCTGATTTCCACCACCGTATTCCCAGTAACCCAAGATCGCCTGTCTGAGCCATCTACCCCTCCAGCCGGTTCTGAAGATCTGGAAATCCTGCAGATGGAGAACctgctccagtccatcagtgcTTTCAGGTGCGACCCCAGCCCTGTCCCAGAGGAGGATGAACCTTTGATCGAGCGCACTGAGATGTCTGAGAAATCACTTGTAAAGAAGGAGATACACAGCAGTGAAAATGAGCTTGAAACATTTTTGTCCGTCTTTGTTAACGGGAACGCTGATGCCAATGGGAACTTTAACAACGGTAACCATGACGATTCGGTCTTTGAGTACGAACAGGAGATGTTCAGCATTAAGGGAGACTGGGCGGACAGAGACAGCGGTGTTGAAGAAGGTCGTCTATGCGATTCGGACTTTGAAATCTCAAAAAGCAAAAGCCCCTCACAGGAGTCGCTCACTCAAATCACGGGAtcccttttctctctcaaacTTGACTTGGGCCCATCCATTCTGGATGATGTACTCAATATCATGAATAAGCCAGTGTCTTAGGAAGTGATTTTTATTGAGAACTAAAAGGGAATCTATTTGTCTCGAGCCCAAACTTGACATGGCAATACTGACCTGAAGAGGCTGAACTTTCTTTCCCAGAGTAAGTTTTTTGTCTTTAGCTTCGGAGTGTCTTGCACATAAAAGTAATGCGATTGACACACAGCCGTTGTGccttttaagttaaatttaagcATGCATGGATTCTGATGTTGTACACGCAGATCAGATGAGGCATTTTCTGTGTACTGTTGTTCATTCACAACCTCATACAAAAGTCAGTGTGATAACGTGTACATTTCTGCAAACATATACAATGTTCCCATCACAACGTCTTTCACGCACAGATATATTTATACTGACAGTTTCATTAACCACACTACCAAATCTTAAATACCTACAGCATATATGTTTTTACGTTGTGAagctaaatatgaaataaataaataaataaataaataaacaattctcttatttagttta

Function

symbol description
cdc42ep3 Predicted to be involved in Rho protein signal transduction; positive regulation of cellular component biogenesis; and regulation of cell shape. Predicted to be located in endomembrane system. Predicted to be active in cytoplasm; cytoskeleton; and plasma membrane. Is expressed in epidermis; muscle pioneer; pectoral fin musculature; peripheral olfactory organ; and tail bud. Orthologous to human CDC42EP3 (CDC42 effector protein 3).

NR:

description
cdc42 effector protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256130.1 True 2905 mRNA 0.45 2 16381358 16390115

Neighbor

gene id symbol gene type direction distance location
LOC122356348 LOC107747251,LOC107549156,LOC107665613,LOC107676394,LOC107719205,LOC107586077 coding upstream 48693 16327857 ~ 16332665 (+)
polr1b polr1b coding upstream 79263 16292761 ~ 16302095 (+)
dkk1a LOC107601033,LOC107665569,LOC107747256,LOC107719231,LOC107702737,LOC107586111 coding upstream 410046 15968755 ~ 15971312 (+)
prkg1a prkg1a,prkg1b,LOC107747254,LOC107665604,LOC107702750,LOC108263833,LOC108443637,LOC107586071,LOC103355670 coding upstream 414533 15916832 ~ 15966825 (+)
ankrd2 LOC107586109,LOC107747258 coding upstream 493256 15877514 ~ 15888102 (+)
opn3 opn3,LOC107549142,LOC107665579,LOC107747290,LOC107586115,LOC107719228 coding downstream 32669 16422784 ~ 16432009 (+)
ide ide,LOC107665588,LOC107549153 coding downstream 58619 16448734 ~ 16469493 (+)
cpeb3 cpeb3,LOC107586080,LOC107719219 coding downstream 98762 16488877 ~ 16515704 (+)
mlh1 mlh1 coding downstream 174193 16564308 ~ 16570793 (+)
mrpl14 mrpl14,LOC107676385,LOC107679189,LOC107549148,LOC107734281,LOC107586084 coding downstream 203185 16593300 ~ 16594640 (+)
LOC122356350 NA non-coding upstream 282 16361672 ~ 16381076 (+)
LOC122356273 NA non-coding upstream 466412 15898871 ~ 15914946 (+)
G94176 NA non-coding upstream 593128 15774767 ~ 15788230 (+)
G94175 NA non-coding upstream 606963 15773969 ~ 15774395 (+)
G94174 NA non-coding upstream 616784 15764340 ~ 15764574 (+)
G94361 NA non-coding downstream 151070 16541185 ~ 16542938 (+)
G94365 NA non-coding downstream 167721 16557836 ~ 16558137 (+)
G94397 NA non-coding downstream 351352 16741467 ~ 16796842 (+)
G94481 NA non-coding downstream 495969 16886084 ~ 16925137 (+)
G94484 NA non-coding downstream 536799 16926914 ~ 16938654 (+)
nkx1.2la nkx1-2,nkx1.2la,LOC107601042,LOC107702751,LOC107665606,LOC107586110,LOC107719237 other upstream 476449 15901540 ~ 15904909 (+)
G94186 st3gal7,LOC107665608,LOC107601047,LOC107747259 other upstream 503936 15873444 ~ 15877422 (+)
hps1 hps1,LOC107747297,LOC107665607,LOC107719211,LOC107702747,LOC107586068 other upstream 509542 15864839 ~ 15871816 (+)
LOC122356934 LOC107747267,LOC107665602,LOC107601027 other upstream 1063181 15314814 ~ 15318177 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other upstream 1066702 15295849 ~ 15314656 (+)
G94324 NA other downstream 125712 16515827 ~ 16518826 (+)
G94378 capn1a,LOC107549131,LOC107676389,LOC107586085,LOC107679188,LOC107734280 other downstream 207666 16597781 ~ 16605383 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other downstream 1170181 17560296 ~ 17575938 (+)
G94760 NA other downstream 2049058 18439173 ~ 18439583 (+)
G94789 LOC107563058 other downstream 2146777 18536892 ~ 18537443 (+)

Expression


Co-expression Network