slc3a1 (slc3a1,LOC107747531,LOC107666489,LOC107698747,LOC107733775)


Basic Information

Item Value
gene id slc3a1
gene name slc3a1,LOC107747531,LOC107666489,LOC107698747,LOC107733775
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6545507 ~ 6553326 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256147.1
TGATGAAGTGGAATAACTAGTTTgctaattaatgttttatatattggATATATGCTGGACTTTTATACCCAGAGGGGTGTAAGAGTCCTGTGTACAGATGTCCGTAACACTAAAACATTGTAAACTGTCACTTTGTTGCAAGGACAATGCTAAGATGAGTTACCTGACTTTCCACTAATGCGTAGCCAAGGCAGTGTGTGATTGGTCCTGCTAATCTCTGCCACATTCCTCTGGGAGGGGTTTTATTGTGTGTTGAGAGGGATGGAGACAGAATGAGTGTTGTGCACTATGGACTTGTGAATGCCTCTATTTAACAGGGCTCCTGCCGTGTCAGCTCTCACAAGTGTTGTTCCTTGGGACCGAAAGAAGCAAGAAAGATGAGTTCGACCAAAATCACCAACATCGATGCGGTGGAGCTGCAAGAAGGCGTCTCAAACGCAGCCTTTCATGAGGATGATGAGGACGCATCGATCTCTCAGCAGGCCACGAGCGTGCCCATCATCGGGCCGGAGGAGAACGAGTACACTCAGATCAAGCCGTATGCTGGGATGCCCAAAGAGGTCCTGATGTTATACTCCAGCAAAGCTTGCTACCGCATACCACGAGAGATCGTTTTCTGGCTGATCATCATATGCACGCTGGCCCTTATTACCATGACCATTACGATCGTGGCGCTGTCACCTCGATGCATGAGCTGGTGGCAGCTGTCTCCGGTCTATCAGGTTTATCCACGATCATTCAAAGATTCAAATGATGACGGTGTTGGAGATCTCAAAGGAATCAAGGAGAAACTGAGTCATTTTGAGTACCTTAACATTAAAGCGGTCTGGATCAGTCCTTTCTACAAGTCTCCCATGAGGGACTTTGGATATGACGTGGAGGACTTCAGGGAGATCGATCCCATCTTTGGGACCATGGAAGACTTTGACGACCTCCTGGCAAGCATGCATGATAAAGGGCTAAAGCTGATCATGGACTACATCCCGAACCACACCAGCGACAAACACATCTGGTTCCAACATAGCCGTAATGGTACAGAGCCCTATAAAGACTACTACATCTGGGTTAACTGCACACGAGACAAACCTCCAAACAACTGGGTGAGCGTCTTTGGGAATTCCACCTGGGAGTATGATGAGGTGCGACAGCAGTGCTATTTCCATCAGTTCCTCAAGGAGCAGCCTGACCTGAACTTCCGTAACCCTCGAGTCATAGAGGAGATGACGGACATAATCCATTTCTGGCTGAAGAAGGGGGTGGATGGGTTCCGCATGGACGCTGTGAAACACATGCTTGAGGCCACGCATTTGAGAAATGAACCCCAGGTCGACCCAGACCAAGATCCATCGACTGTGGACACGGAGTTTGAGCTGTACCATGACTACACCTACACACAACCGGGCTTGCATGAGATCCTGACGGAGTGGAGGAAAGAGCTGGACGCCTACAGCAGAGAGCCCGGCCGCTACAGGTTCATGGTCACAGAATGTTACGATTATGAAGAAATAGATAAAACCATGAGGTACTACGGCACAAGCTATGTCACTGAAAGCGACTTCCCCTTTAACTTCTATCTCCTGTACCTTCCCGATGGTCTGTCAGGAACACAAGCCAAGCGCTTGGTCAATTTATGGATGTCAAACATGCCAAAGGGAAAATGGCCAAACTGGGTGCTGGGAAACCACGACAAGCCACGTATAGGCTCAAGCGCTGGTAGGGAATATATACGTGTTATGAACATGCTGTTGTTAACGCTGCCTGGAACTCCCACAACATACTACGGAGAAGAGATCCATGGTGAACGAAATGTATCTGTAATTCAGGATCCTTTTGGACAGCATGATCCAagCAACAGTCGTGACCCGCAGCGAACCCCAATGCAGTGGGATGATAAGCTCAATGCTGGTTTTAGCAACAATGAAAGTGGCACATGGCTAGACATTGCTCCAGACTACAGAACCGTCAATGTGGAGCTTCAGCAGGCTGATCCACACTCCACCATCTCACAGTATCGTGCTCTGAGTTTGCTCCGAGGCGCTGAGCTGGCCCTGTCCCGTGGCTGGTTCTGCTTCGTCTGGAGCGATGTCAACGTGTTTGCCTATTTGCGCGAGCTGGACGGGCTCAACAAAGCCTTCCTGGTGATTCTCAACTTCGGCAAGGATGCTACGACAGACTTGTCTTCGGTTACTGAGTTGCCAGAAACTCTTACTGTGCATTTAAGCACAGTGCCAATAAGTCAAGGGACGCTCCCTAAATCTAGCATTTCAACATCTCAAGGGCAAGGACTGCTCCTGGAATATTCCACCAATCAGCGCTCACCGAATCATGTAGCTGAGTGCTATGTTTCTGAGAAAGCCTGCTACTTGCCTGAACTAGATATTTTGTACAATTGTTGAAGATACCAAACGACACAGTTGACAAACAATAAAGGCTATCTTTGTA

Function

symbol description
slc3a1 Predicted to enable catalytic activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cystinuria. Orthologous to human SLC3A1 (solute carrier family 3 member 1).

NR:

description
neutral and basic amino acid transport protein rBAT

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K14210 SLC3A1, RBAT; solute carrier family 3 (neutral and basic amino acid transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256147.1 True 2442 mRNA 0.48 12 6545507 6553326

Neighbor

gene id symbol gene type direction distance location
ppm1ba ppm1ba,LOC107733761,LOC107585253,LOC107747533,LOC107666482,LOC107602505,LOC107698745 coding upstream 2278 6516883 ~ 6543229 (+)
abcg8 abcg8,LOC107666472 coding upstream 93999 6444614 ~ 6451508 (+)
cep170aa LOC107747537,LOC107666471,LOC107587839,LOC107733772 coding upstream 116120 6396742 ~ 6429387 (+)
adss2 adss,LOC107733748,LOC107666526,LOC107698758,LOC107585249,LOC101162945,LOC107747588 coding upstream 302975 6227540 ~ 6242532 (+)
si:ch211-132e22.4 si:ch211-132e22.4 coding upstream 333608 6210396 ~ 6211899 (+)
camkmt si:ch73-54n14.2,camkmt,LOC107602502,LOC107585255,LOC107733780,LOC107698723,LOC107666367 coding downstream 7906 6561232 ~ 6654233 (+)
six3a six3,six3a,LOC107733790,LOC107585256,LOC107711438,LOC107666567 coding downstream 150761 6704087 ~ 6707392 (+)
LOC122356727 LOC107585260,LOC107585259,LOC107733721,LOC107733720,LOC107698744 coding downstream 287271 6840597 ~ 6843540 (+)
LOC122356807 LOC107585259,LOC107733721,LOC107733720,LOC107585260,LOC107683040 coding downstream 291406 6844732 ~ 6848243 (+)
tm9sf3 tm9sf3,LOC107711435,LOC107698740,LOC107666468,LOC102778527 coding downstream 296209 6849535 ~ 6860874 (+)
G91343 NA non-coding upstream 92431 6452744 ~ 6453076 (+)
G91324 NA non-coding upstream 174979 6370210 ~ 6370528 (+)
G91250 gabrb1,LOC106937613 non-coding upstream 543445 5998442 ~ 6002062 (+)
G91172 NA non-coding upstream 588909 5954891 ~ 5956598 (+)
G91180 NA non-coding upstream 617374 5927834 ~ 5928133 (+)
G91492 NA non-coding downstream 140336 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 169954 6723280 ~ 6755554 (+)
G91529 NA non-coding downstream 261684 6815010 ~ 6861516 (+)
G91545 NA non-coding downstream 389241 6942567 ~ 6942795 (+)
G91594 NA non-coding downstream 493615 7046941 ~ 7047247 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other upstream 187490 6254603 ~ 6358017 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other upstream 558528 5982518 ~ 5986979 (+)
lamtor3 lamtor3 other upstream 592990 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 1274260 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 1347103 5177718 ~ 5198404 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 539818 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1218234 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1282854 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 1305372 7858698 ~ 7886690 (+)
G91833 slc37a1 other downstream 1753160 8306486 ~ 8310824 (+)

Expression


Co-expression Network