vox (vox,LOC107750144,LOC107689360,LOC107580632)



Basic Information


Item Value
gene id vox
gene name vox,LOC107750144,LOC107689360,LOC107580632
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20947987 ~ 20949698 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043256148.1
ctgcccaatatttttgtggaaaccgcgTTATTGTATAAAAGCAACCAACGTGTATTTCGTATGGCATTTTGGGGTCAAATGCAATCATTTATTATGAGAATGAAGTTGAAAATTggtgtaaaatacaaaaaaagttttactaatcatttaagttgtttttttttaagtttcttttctttacgCTTTAAATTTGCGATGTTAAGGACGCAATTTTCGCCATAAATGCGCCACTTGGGATCCAGTTGTTCTGACACTCCATCTGTGTTTGAAGAGGACGCAGACAGCTGGATGAGCCAGAGGTTCTCACAGACAAGCTGGCGCCAGGCTTTCACACAATCACAGGATATGTAAAGACTTCAATAACGACCCATTAGGCCTAATGATTGAGAATCGATCAGGCGTTAACTCCTCCATGCATATGTTAATGTGACGCGGGACGGGCCTATATATATTCAGGCCGCTTCTGGAGACCTGGCACACAGTCTTGGATTGTACTCGGATAGACTCACGTCCTCGGACAAGTAGACAGCAATCATGGTGAAGACGTTTTCTGTGGACTGGCTCGCTCAAAGCTTTCACGATTCGCCTCCTCAAGACGTTCTGGAGCCGGAGAAGAAGACGCACAGGCCACACGTACCGTGCGTCGTTCAACCCAGACCCCCGACATCGTACGACAAGGTTTATTTGCAGCCAAAACCAAAGGTTAACAAAACTGAACAGAAACCAGGCGCCGTTAAAGAGAAGGAGGTCGCAACTCAAAGGAGCTGCTCGTCTCCAAGCTTTTCAGAGAACGGCGGCTATTCGTCGGGTTATGAGAGCGAAGCGGCCTCGTCCGAGTGCGCGTCCGTCGAAGACGGGAACGAGACCGAGAAAGACGCGGCGACGCGAAGAATCCGAACCAAATTCACCCCGGAACAGATCGACAAACTGGAGAAGATCTTCAACAAACACAAATACCTGGACGcgggagagagagtgaaaacAGCCCTGAAACTCAGTCTGTCAGAAACTCagGTCAGAACGTGGTTCCAGAACCGCAGGATGAAGCTGAAGCGGGAAGTTCAGGAGATGCGCGCTGACTATCTGCTGCCTCAGATGGTTCTTCCGCACGTGCTTCCGGTTCAGTACCACTGCTACGACAGACAGCGACTTCCGTTTCCGCCTCACGGCGCGCTGATGCAGCAGATGATGCCGCCGGTTGCTCCTCATCAGCTCATGATGGCCAGGCAGCATTACTACTGAAGACACTACAGAGACTCGTTCCTTTAAAACACTTAGATCACATCCCGTGTGCAATATCTGTacagttaattaaaaagaagagtttatttataaataaagta

Function


symbol description
vox Enables protein heterodimerization activity and protein homodimerization activity. Acts upstream of or within dorsal/ventral pattern formation; regulation of endodermal cell fate specification; and regulation of mesodermal cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including cloacal chamber; embryonic structure; epidermis; hindbrain neural plate; and midbrain neural keel. Orthologous to human VENTX (VENT homeobox).

NR:

description
homeobox protein vent1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043256148.1 True 1343 mRNA 0.48 3 20947987 20949698

Neighbor


gene id symbol gene type direction distance location
vent NA coding downstream 1462 20944584 ~ 20946525 (-)
blnk LOC107750133,LOC107728331,LOC107689749,LOC107689365 coding downstream 261067 20662202 ~ 20686920 (-)
ccnj ccnj,LOC107689370,LOC107565073,LOC107728310,LOC107750147,LOC107689765,LOC107750154 coding downstream 296432 20645694 ~ 20651555 (-)
herc4 LOC107689351,LOC107750134,LOC107689752,LOC107728328 coding downstream 302649 20624977 ~ 20645338 (-)
sirt1 sirt1,LOC107565065,LOC106604510 coding downstream 331575 20607257 ~ 20616412 (-)
LOC122356249 LOC107686530 coding upstream 5769 20955467 ~ 20997713 (-)
LOC122356507 LOC107708201,LOC107658777,LOC107554523 coding upstream 78067 21027765 ~ 21042154 (-)
LOC122356506 LOC107689349,LOC107663567,LOC107750141,LOC107720869,LOC107570923 coding upstream 260120 21209818 ~ 21254638 (-)
LOC122356942 LOC107689348,LOC107663569,LOC107750139,LOC108426858,LOC562831,LOC108262825,LOC107567011,LOC105926138 coding upstream 319652 21269350 ~ 21323003 (-)
trnag-gcc_70 NA coding upstream 464102 21413800 ~ 21413871 (-)
G95623 NA non-coding downstream 21244 20847297 ~ 20926743 (-)
G95549 NA non-coding downstream 118934 20828778 ~ 20829053 (-)
G95535 NA non-coding downstream 269718 20621262 ~ 20678269 (-)
G95537 NA non-coding downstream 327268 20620047 ~ 20620719 (-)
G95524 NA non-coding downstream 427894 20518600 ~ 20520093 (-)
G95635 NA non-coding upstream 26581 20976279 ~ 20976497 (-)
G95640 NA non-coding upstream 46385 20996083 ~ 20996511 (-)
G95641 NA non-coding upstream 49342 20999040 ~ 20999265 (-)
G95642 NA non-coding upstream 51639 21001337 ~ 21001844 (-)
G95643 NA non-coding upstream 52929 21002627 ~ 21003651 (-)
G95526 NA other downstream 376425 20570038 ~ 20571562 (-)
G95511 NA other downstream 451123 20493642 ~ 20496864 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other downstream 455911 20488785 ~ 20492076 (-)
G95520 NA other downstream 461283 20479925 ~ 20486704 (-)
LOC122356211 gng4 other downstream 672601 20264726 ~ 20275386 (-)
G95646 adgra1,LOC107750141,LOC107567015,LOC107663568,LOC106903219,LOC107720869 other upstream 57774 21007472 ~ 21180217 (-)
LOC122357128 NA other upstream 1187690 22137388 ~ 22143970 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other upstream 1202044 22151742 ~ 22156859 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other upstream 1281751 22231449 ~ 22250313 (-)
G95932 NA other upstream 1286406 22236104 ~ 22238570 (-)

Expression



Co-expression Network