cacul1 (cacul1,LOC107689372,LOC107562395)


Basic Information

Item Value
gene id cacul1
gene name cacul1,LOC107689372,LOC107562395
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20598724 ~ 20606506 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256163.1
TGAATGagtaaatatgtacaaaattaaatacatcaaATTGATTATTCGGTATTTATGCCGACGACGGACTCTTATTTTGCCGTGCGGACTGTTGTTTTGACACGTCCGCCATTAAACGGAAGTCCGTGTCGGATCTCGCTTCGGAttgacaacaaaacaaacaggagcGAAAGCGAAGCGGTAAACATGGGTCGGTCGTCGCTGGGCTGAAGCGGGTTTTTTAGTTGACATGGACTGCTGAAGCTTTCTCAGCGCGGCCGCAGCATGGAGGAGATGGAGGGGATCGAGGATGATAATCATAACTGTCGCGCGGAGCCCGTGAGCGCGTGTCCGCCTGCGCAGGTGTGTGTGGAGCCCGTGAGCGCGTGTCCGCCTGCGCAGGTGTGTGTGGAGCCCGTGAGTGTGTGTCCGCCTGACTCGGACTCCAGCAGTGACTCCTGTGAATCCGACAGCTCGGCCTCCTCTGCCCTGCTGCTCAGCTCCTCCTCCAAGTTCTTGCTGAACGTGATGACAGCAGAAGAATACAGGATGGTCTACTGGCCCAAGCTGGAGCGAGCCATCGAGCATCTGCTCACTCAGAGCCCCATGGAGCACATCTCCATCTCATACGAACAGATCTACAGTCACGTTTATAAGTGTGTGTGCCAACAGCACTCGGAGCTGCTCTACAACGACCTGATGTGGAAGATCACGTCTCATCTGGAACAAGTGTCTTCTGAGCTACAGGCCAGCCCGCCAGAACATTTAATCGAGAACTTCAACCAGGCTCTGACTCGCTACACAGCCGCCCTGCACTGCATCGTTCCCGTCTTCATCTATATGAACAAGTTCTACATCGAGACGAAGCTGAACCGCGACCTTCGGGACGATCTCATGAAGCTCTTCTCCGATCACGTGGCAGAGAAACACGTCAGCGCTCTACTGCCTCTTCTCAAAAAGGCTCATTCCATGCCGTTTCAAGTCAAACCATCGACTATGGCGAGTGTTGTGAAAGGTCTTTACTCCCTCCGGCCAGACTGGGTTCCTCTTGCTCCGGCTCTGTTCTCTAGATTCATTCCTCAGATCGATCCTCCTGCTCTTGAATCTCAGCTCCCGTATTACGCGGATCAAGACAAAAGACTGCAGATGGAGCTTTCTCAGAAGGGCTTctccagGGGTGACCAGTCGAGGAAGAGAGCGAGTGAAGAGTCCTGACGGCCGAGTGGACTTCTACGCTCGAAGCCTGCGTACTTCATTAGAAATCACTTCACGGCAGACTTTATCTGACACAGAGACGCTTCATCTCTTCTCACAGTCCTTTGGGAATTCTCAGTTATTTAGAGAGTTCACTAAACACGAGCATCATCTCTACCTCCTCCGTGAGGTTGCTTCTTTTCTCTCTGGGTTCTGGATTTGTTTTCCAGTATTTATCATATTTCCAGGTTGATTTTATGATGCTGTCATTCGGTGAAATCATCCGGTTTGCTGTGATGGTTGTAGACTGCAGTAACGTGATGTTGGATCCAGAATGCAGGTATTCAGAATCCAGATTCTTAcccaattaaattttttgtatatattaattttaggATCACTACTGTAGTTTTAAACGGTTTTAGTTGACACCGCTTTACCTAACAGTAACGTGCCTTTGGCTGCtcgcctttttcttttttttaatgatatgtaAAAAGTCAAGcatttatgatgatgatgatgattattatgttgattttttttattttttggcgctttagtagaaaaaaaaaaatcacacgtTGAATCTGGAACAGTTTGTGAGAAACAGCACAGATAAAGGACATCTGAAATGCAGGTGTGATATAAAGGGCTGCTAATAATTTATCTGGAATAAACTCATGACACTGAATTACAA

Function

symbol description
cacul1 Predicted to enable ubiquitin protein ligase binding activity. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Orthologous to human CACUL1 (CDK2 associated cullin domain 1).

NR:

description
PREDICTED: CDK2-associated and cullin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256163.1 True 1873 mRNA 0.47 8 20598724 20606506

Neighbor

gene id symbol gene type direction distance location
mypn LOC107689354,LOC107562382,LOC107750149,LOC107565072 coding downstream 2735 20572320 ~ 20595989 (-)
LOC122356970 gpatch11,LOC107689758,LOC107562390,LOC107708600 coding downstream 51732 20542775 ~ 20546992 (-)
eif2ak2 NA coding downstream 56089 20521647 ~ 20542635 (-)
nid1a nid1,LOC107691203,LOC107750138,LOC107689759,LOC107728305,LOC107575665 coding downstream 96076 20347147 ~ 20502648 (-)
lyst lyst,LOC107691204,LOC107728318,LOC107689764,LOC107569426 coding downstream 253042 20275777 ~ 20345682 (-)
sirt1 sirt1,LOC107565065,LOC106604510 coding upstream 751 20607257 ~ 20616412 (-)
herc4 LOC107689351,LOC107750134,LOC107689752,LOC107728328 coding upstream 18471 20624977 ~ 20645338 (-)
ccnj ccnj,LOC107689370,LOC107565073,LOC107728310,LOC107750147,LOC107689765,LOC107750154 coding upstream 39188 20645694 ~ 20651555 (-)
blnk LOC107750133,LOC107728331,LOC107689749,LOC107689365 coding upstream 55696 20662202 ~ 20686920 (-)
vent NA coding upstream 338078 20944584 ~ 20946525 (-)
G95524 NA non-coding downstream 78631 20518600 ~ 20520093 (-)
G95519 NA non-coding downstream 83413 20514773 ~ 20515311 (-)
G95506 NA non-coding downstream 360497 20236678 ~ 20238227 (-)
LOC122356209 NA non-coding downstream 457766 20108191 ~ 20140958 (-)
G95469 NA non-coding downstream 522787 20075371 ~ 20075937 (-)
G95537 NA non-coding upstream 13541 20620047 ~ 20620719 (-)
G95535 NA non-coding upstream 14756 20621262 ~ 20678269 (-)
G95549 NA non-coding upstream 222272 20828778 ~ 20829053 (-)
G95623 NA non-coding upstream 240791 20847297 ~ 20926743 (-)
G95635 NA non-coding upstream 369773 20976279 ~ 20976497 (-)
G95526 NA other downstream 27162 20570038 ~ 20571562 (-)
G95511 NA other downstream 101860 20493642 ~ 20496864 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other downstream 106648 20488785 ~ 20492076 (-)
G95520 NA other downstream 112020 20479925 ~ 20486704 (-)
LOC122356211 gng4 other downstream 323338 20264726 ~ 20275386 (-)
G95646 adgra1,LOC107750141,LOC107567015,LOC107663568,LOC106903219,LOC107720869 other upstream 400966 21007472 ~ 21180217 (-)
LOC122357128 NA other upstream 1530882 22137388 ~ 22143970 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other upstream 1545236 22151742 ~ 22156859 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other upstream 1624943 22231449 ~ 22250313 (-)
G95932 NA other upstream 1629598 22236104 ~ 22238570 (-)

Expression


Co-expression Network