tmem87b (LOC107597636,LOC107688162,LOC107585411,LOC107679197,LOC107724612,LOC107733328)


Basic Information

Item Value
gene id tmem87b
gene name LOC107597636,LOC107688162,LOC107585411,LOC107679197,LOC107724612,LOC107733328
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19208840 ~ 19219501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256188.1
ACGTGTCACGCGCTCAGGTGTGCGCGTCTCTGGACAGTAAACATGGCCGACAGCAGCCGCCGGATACTGAACGGCAGCCGTTTGCTCGGTTTTATCCCGTTTCTCCTCGTCGCCTCATCGTTGAATGGAGCTACCGCCGCTCCAGAGATGGGCCTGTGGACTGCCACAGTGCTTAACACGTCAAGACCTTTAATGTTGAGAAAAGCCGTGTATAAGGACACGGACGTTCAACTGAGAGTGACGTCATTTGGTTGTCCGGAGGAAGTGACGTTCTCCATTCAGTGGTTTCTGAAATACTACCCCTGTCACAATGAGTACAACAATATCGAGGAGATGTATGATAAGACGCCACTGAGTCAAGGAAAGAGCCTGGACCCGAACCCTCTCGGACCCGGGGAGTATATTCAGCACAGATACAGGGAGTTATCCTGCCGCAGCGACATGCACATGTTCCCTATGTTCAATAAATCAAAAGCAGAACCAAAAGCTGTGAACCCGGCTCGATTGGAAGGCGAGTTACAGGATGGGAGTTTCGCAAGTTCTTCTGTGGCTGAGGCTGGTTCTTCCAGAACAACGGAACATGTGATCGCTACGACCTGGAAGGACGGGCCCTACCTGCTGGTAGTGCAGATCAACTCAAGCAAACAGGATGCCAACTGGAATTTAACCTTCAGTGTTGTGATGAAGGGAACACATGGCTATCTGTCTGTCACCGAATGGCCTCTCATGATCttttacatGGTGATGTGTGTTGTGTACATCCTGTATGCTCTGCTGTGGTTCGTCTGGGCATCCTGCTACTGGAAAGACCTGCTGAGGATCCAGTTCTGGATTGCAGGAGTCATATTCTTGGGCATGATAGAGAAGGCCGTCTTCTGTGCTGAGTATCAGAACACTAACAACGTGGGCTCAGCGTCTCAGGGTCTGCTGATCTTTGCCGAGCTCATCTCCGCTCTGAAGAGGACTCTGGCCCGTTTGCTCGTCATCATCGTCAGTCTGGGCTACGGCATCGTCAAGCCGCGTTTGGGCACCGTCATGCACCGAGTGGTGGGTCTGGGTGTGCTTTACTTCGCTTTTGCTGCCATTGAGGGCATCCTGAGGATCACCGGGGCTAAAGACTCTGACCTGGCCCTGCTAGCCAACATTCCCCTGGCTCTGCTTGACTCCTCTCTGTGTTGGTGGATATTTGTGAGTCTGGCACAAACCATTAAGACTCTGAAACTCAGAAGAAACCCGGTGAAGCTGTCTTTGTACAGACACTTCACAAACACGCTCATCTTCGCTGTTCTCGCCTCCATTATTTTCATGGTTTGGACGACGAAGAAGTTCCGGTTAGCGGACTGCCAGGCGGACTGGATGGAGTTGTGGGTGGACGACGCTTTCTGGAGGTTCCTCTTTTCCATCATACTGCTGGTCATCATGTTTCTGTGGAGGCCGTCTGCCAACAACCAAAGGTATGCGTTCACGCCGCTTATCGATGACTCGGACGACGAGGAGATCGAAGAGTTCCTGGTGTCTGCCAACATCGCCGATGGGATAAAGCTGAGGGCAGCTAAGACGGAAACCAATGGAACGGTGAAGCCTGCAGCAGCCAATCCGGATGAAGATTTGAAGTGGGTTGAGGAGAATATTCCTACCTCTCTGTCTGATGTaGCTCTTCCTGTTCTTCTCGACTCGGATGAGGAGATCATGACCACCAAGTACGAGATGTCTAAGATGGAGTGAGGTTGAGAAAGCGCTGCAGCCGAAGCAGACCTCCAGCGATCGACCGAACCTCCAGAGACCCTCCAGAGAGTCACAGACACTCGAGACTGTTTCCTTCCTTTGGTCCGGATGGTCGGCGGCTTTTGGGTAAATTGAAGGAATCGCGCTGAAGAGGTGGACGCATCCTAGCTGATCTAGACGCAGTACTACCTGAACTTCGAGGTGTTacctcgcttttttttttttttgaacggACTTTAACGTCATCATCGATCTGTATAAAGAGACGACGGTCTGTGTTTATAAACTTTTGTGATGACAAACCTGTCAAAATTGTGAGCGAGTATTGAAATGGGTGAAACCATTCTTAGCGctggcttttgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactccaTCCTGGAAAAACTTCAAGTTGACCAAAGCGTCTTCTCCATTTCATCCAGTTAGTCTTTGGCTGTACATAAAGTGTTATTTCAGACATTCAGACTAAGTAGAATGTCTGTCGGTGTGTACCAATTGTTTGTGACTTGTGCAGGGAGTAATTTAAATGGGcagaataattaattatatattcagAATCATTTTAGGAGGCTGTTTTGTCTTGAGGAGAGCCCAGCTTAGCCCTTCTCACGTTAAAAGGAGGATTTATTTAGCCACCCCCGCATCTCCTCAGTGCGCTGTGTATGCGGTTATTTATGGAGGACCGTTTTGGCcacaagagtgaaagaaaaataaatggaaaaaaaaagataattgcttttttttattttagaattcaGCTTTTTTCTCACGCTTCTGAGACTTGATTTTATGAGACAACCGAGCGATTTCTGGTTTATGTCTCTAAAttctacaatttttaatttgcagTCATGTtttgtgggggaaaaaacaaacgTAATAGCGACATTTATCTCACAATGCTTACTTTTCCCTTTCAGTTGTAGTTTACACTCATTTTTCTTCTCATAAATGCAAGTTTATGCCTTGTAATTCTGCTGAAgaagtcagaactgtgagatgtGAAGTGTTTGATAAAttaacaataactttttttttttttttttttaatcatggcAGTAACAGAAcgcaaaaagagaaaatgtaaagatttaAAGCAGTGCATACAACTTATGCACAGCTTTAATCTTTGCATTTTCTCTtaattccaagtcttctgaagtaaTATGACTACTTGTGAGGAAAAGAGACCATTTGACCCCTCCGCTGGCCAAACGCTTCACCTCTGGCATCATGAAATCTGGAGGTTTTTGTGAACGAGGTTTGATGAAATCGAATGAAGTTTTGGTCCATTTCTTACAGAAAACTACTGCGCGAGTTGAAATGTAGCACATTTTACGATGCGTTTTTTTTGGAGCTTGAATTTTAATTGTATGCAAAGACGTAGCACGAAGACTTTTCGATTTTCATTTGAAGAAATATAGTTGGGTTTGAAACAACGTTAgagtgtctttatttttttgcgtGAGATcttcctttttaaatgcatttgtatttcttttttgagGCAAAGTGTATGTGTCTTGAATCACTGTGTAGATGCATATACTCGAGCTGAAGCCTTAACtcacttctgtttttttcctcatcaaaTCATTCTGTCCTGGTCATGGTTGGACACTGTCTGCTTAACAGAGCGATCCGTGCTTCAGAAAGCTCTTTTCTTTTATGCGtccttgagacaaaacaaaatccTTCGTCAGATAACTTGAGATCTGTGTATATTATAAAGCGCACTTTACGTGAATGTTATTTCTTTTGGTTATAGGATGGAGCTTAATGCTGACCGTGTCGTTCTGTTTCGTTTCTTcaataaaaatggttttctttgCCTTTCCGTTGGCCTCCTCAAATGTGAGTTCATACTGTGAGTTCAAAAAGCACACTTGATGCCCTGTAGAGCTCAGGTCTGGTCTGTTTTCGGTCTACATGCATGTTTATCCATGTTTCATACATGTTCAGCAATGTGGGTTGCAATAAAAGACTCTTTATTAGTCCA

Function

NR:

description
transmembrane protein 87A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256188.1 True 3787 mRNA 0.45 20 19208840 19219501

Neighbor

gene id symbol gene type direction distance location
mertka mertk,mertka,LOC107724611,LOC107733327,LOC107585446 coding upstream 845 19171364 ~ 19207995 (+)
acoxl acoxl,LOC107724570 coding upstream 109804 19060979 ~ 19099036 (+)
anapc1 anapc1,LOC107733344 coding upstream 312868 18838624 ~ 18895972 (+)
fbxo5 LOC107679190,LOC107724586,LOC107655774,LOC107733324,LOC107578492,LOC107578230,LOC107585449 coding upstream 389286 18816163 ~ 18819554 (+)
mtrf1l mtrf1l,LOC107733345,LOC107724593,LOC107585450 coding upstream 392723 18812271 ~ 18816117 (+)
zmp:0000001006 NA coding downstream 28098 19247599 ~ 19249389 (+)
LOC122357010 LOC107754576,LOC107679191,LOC107733337,LOC107585410,LOC107688298,LOC107597633 coding downstream 30030 19249531 ~ 19258363 (+)
msh6 msh6,LOC107725009,LOC107588437 coding downstream 275428 19494929 ~ 19505429 (+)
LOC122356808 sipa1l2,LOC107667119,LOC102793238 coding downstream 470249 19689750 ~ 19805608 (+)
LOC122356779 egln1a,LOC107690805,LOC107728333,LOC107730384,LOC107557733,LOC107667047,LOC107564238 coding downstream 760290 19979791 ~ 19995620 (+)
G94974 NA non-coding upstream 96555 19111822 ~ 19112285 (+)
G94967 NA non-coding upstream 101052 19107390 ~ 19107788 (+)
G94913 NA non-coding upstream 252646 18900618 ~ 18956194 (+)
G94914 NA non-coding upstream 294876 18912898 ~ 18913964 (+)
G94883 NA non-coding upstream 379301 18829316 ~ 18829539 (+)
G95020 NA non-coding downstream 144081 19363582 ~ 19364429 (+)
G95045 NA non-coding downstream 191494 19410995 ~ 19428953 (+)
G95046 NA non-coding downstream 206137 19425638 ~ 19427985 (+)
G95075 NA non-coding downstream 249340 19468841 ~ 19469080 (+)
G95120 NA non-coding downstream 460144 19679645 ~ 19680681 (+)
lhcgr lhcgr,LOC107688869,LOC107679161,LOC107733338 other upstream 38813 19156282 ~ 19170027 (+)
G94776 NA other upstream 577122 18545352 ~ 18631718 (+)
G94789 LOC107563058 other upstream 671397 18536892 ~ 18537443 (+)
G94760 NA other upstream 769257 18439173 ~ 18439583 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other upstream 1632902 17560296 ~ 17575938 (+)
foxn2a foxn2,LOC107588458,LOC107679166,LOC107725033,LOC107667132,LOC107572676,LOC107733332,LOC108441706 other downstream 336097 19555598 ~ 19590284 (+)
LOC122356529 LOC107667070,LOC107589360,LOC107719701,LOC107676301,LOC107733333,LOC107725060,LOC107570100 other downstream 398511 19618012 ~ 19667441 (+)
G95223 NA other downstream 728029 19947530 ~ 20004002 (+)
G95239 irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 other downstream 857784 20077285 ~ 20102120 (+)
G95327 NA other downstream 1146724 20366225 ~ 20494176 (+)

Expression


Co-expression Network