rps24 (rps24,LOC107673958)


Basic Information

Item Value
gene id rps24
gene name rps24,LOC107673958
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10990562 ~ 10993312 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256223.1
tttatcGTCGCTTTTCATTCAGGCAGTACCTTAATATACCATACCACCGCTCAGGCATATTCTCGGGCACCTACAggtccttctttcttttcctcgtCCCTAAGCGAGCCGACGCCAAGATGAACGAGACAGTCACCGTCAGGACCAGAAAGTTTATGACAAACCGGCTGCTTCAAAGGAAGCAAATGGTTGTAGATGTCCTGCATCCCGGCAAAGCAACAGTCCCCAAAACAGAGATCAGGGAGAAGcttgcaaaaatgtacaaaaccaCCCCGGATGTAGTGTTTGTCTTCGGCTTCAAAACTCAGTTTGGCGGTGGCAAAACAACAGGGTTTGGCATGATCTATGACTCTTTGGACTACGCCAAGAAGAATGAGCCCAAATACAGGCTGCAAAGGCATGGCCTCTATGAGAAGAAAAAGACATCTAGGAAGCAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTTAGAGGCATTAAGAAAGCCTCTGTTGGTGCTGCTGGCAAGAAgAAGTGAAAGGCTTGAGGTTTCAGGAGAAGTAAGACCTTCAGGGAAGACCATCGGGCCTGAAAATGTTCTTGTACGTTGTCatcaaataaattctttaaaaaaagtg
>XM_043256224.1
tttatcGTCGCTTTTCATTCAGGCAGTACCTTAATATACCATACCACCGCTCAGGCATATTCTCGGGCACCTACAggtccttctttcttttcctcgtCCCTAAGCGAGCCGACGCCAAGATGAACGAGACAGTCACCGTCAGGACCAGAAAGTTTATGACAAACCGGCTGCTTCAAAGGAAGCAAATGGTTGTAGATGTCCTGCATCCCGGCAAAGCAACAGTCCCCAAAACAGAGATCAGGGAGAAGcttgcaaaaatgtacaaaaccaCCCCGGATGTAGTGTTTGTCTTCGGCTTCAAAACTCAGTTTGGCGGTGGCAAAACAACAGGGTTTGGCATGATCTATGACTCTTTGGACTACGCCAAGAAGAATGAGCCCAAATACAGGCTGCAAAGGCATGGCCTCTATGAGAAGAAAAAGACATCTAGGAAGCAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTTAGAGGCATTAAGAAAGCCTCTGTTGGTGCTGCTGGCAAGAAgTAAGACCTTCAGGGAAGACCATCGGGCCTGAAAATGTTCTTGTACGTTGTCatcaaataaattctttaaaaaaagtg

Function

symbol description
rps24 Predicted to be a structural constituent of ribosome. Acts upstream of or within definitive hemopoiesis and primitive hemopoiesis. Predicted to be located in ribosome. Human ortholog(s) of this gene implicated in Diamond-blackfan anemia 3. Orthologous to human RPS24 (ribosomal protein S24).

NR:

description
40S ribosomal protein S24 isoform X1

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005730 nucleolus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02974 RP-S24e, RPS24; small subunit ribosomal protein S24e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256223.1 True 618 mRNA 0.46 6 10990562 10993312
XM_043256224.1 False 589 mRNA 0.46 5 10990562 10993312

Neighbor

gene id symbol gene type direction distance location
qrfpra LOC107668764,LOC107673889,LOC107716286,LOC107564357,LOC107564360,LOC107588699 coding upstream 828 10986085 ~ 10989734 (+)
pald1b pald1b,LOC107588630,LOC107707320,LOC107668836,LOC107716354,LOC107673876 coding upstream 8778 10969343 ~ 10981784 (+)
spock2 spock2,LOC107668819,LOC107673954 coding upstream 39294 10924934 ~ 10951268 (+)
dnajb12a dnajb12a,LOC107716349,LOC107668821,LOC107707369,LOC107673930,LOC107585300,LOC107588700,LOC108443064 coding upstream 70891 10915644 ~ 10919671 (+)
cuedc2 cuedc2,LOC107585308,LOC107716345,LOC107673918,LOC107588639,LOC107707447 coding upstream 105052 10881919 ~ 10885510 (+)
zmiz1a zmiz1a,LOC107588626,LOC108443181 coding downstream 40635 11033947 ~ 11146626 (+)
ppifa ppifa,LOC107668776,LOC107588732,LOC107564349,LOC107673899,LOC108442288,LOC108263515 coding downstream 156684 11149996 ~ 11152447 (+)
LOC122356105 LOC107588620,LOC107707271 coding downstream 220187 11213499 ~ 11215087 (+)
cxcl18a.1 LOC107707282 coding downstream 221928 11215240 ~ 11217428 (+)
ercc6 ercc6,LOC107588615,LOC107668807,LOC107757150,LOC107708008,LOC107673869 coding downstream 293738 11287050 ~ 11302394 (+)
G92748 NA non-coding upstream 5917 10984238 ~ 10984645 (+)
G92746 NA non-coding upstream 7283 10982940 ~ 10983279 (+)
G92731 NA non-coding upstream 28866 10959420 ~ 10961696 (+)
G92729 LOC107716350,LOC107673932,LOC107707381,LOC107588636,LOC107585302 non-coding upstream 42643 10820942 ~ 10947919 (+)
LOC122357062 NA non-coding upstream 226871 10753233 ~ 10763691 (+)
LOC122356274 NA non-coding downstream 11598 11004910 ~ 11022056 (+)
G92767 NA non-coding downstream 209342 11202654 ~ 11203684 (+)
G92907 wdfy4,LOC107707224,LOC107757102,LOC107673934 non-coding downstream 374954 11368266 ~ 11368907 (+)
G92923 NA non-coding downstream 420911 11414223 ~ 11462116 (+)
G92952 NA non-coding downstream 515926 11509238 ~ 11509888 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other upstream 21648 10964855 ~ 10968914 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 570136 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 740837 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 1555957 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 1826448 9161517 ~ 9164114 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 220214 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 262282 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 396073 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 578348 11571660 ~ 11592600 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other downstream 610385 11603697 ~ 11604852 (+)

Expression


Co-expression Network