calhm1 (calhm1,LOC107726957,LOC107601812)


Basic Information

Item Value
gene id calhm1
gene name calhm1,LOC107726957,LOC107601812
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9412350 ~ 9414196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256237.1
GTGAACCTTTGATCACTTTGAACTCAACTCTGCTCCTGCAGTcttgctctctttttctctctgacaaCACAGGTGAGccgactttttaaaaatggataaGTTTCGAATTATGGTCCAGTTCCTGCAAGCCAACCAAGAGTCTTTCATGAATGGCATCTGTGGGATCATGGCCCTGGCAAGCGCCCAGATGTATTCCTCTTTTGAGTTCACCTGTCCTTGTCTCCCAGACTACAATTACGCGTATGGCATCGGCATCCTTGTCGTTCCGCCAATATGGTTCTTTTTACTTGGATACGTACTTAACAACAACATCTCAGTGTTAACAGAGGAATGGAAGAGACCGGTTGGAAAACGCAGGAAAGACCCGGCGGTCTTGCGCTACATGTTCAGCTCCATGACGCAGCGCGCTCTCATCGCTCCGGCTGTATGGGTAGCAGTGACTTTAATGGATGGCAAAAGCTTCTTGTGCGCTTTCAGCGCCACGACGGATTTATCCGTGTTCTTCAACGAGAGCTACCAAAGCCTATCCAAAAGGGAGGTTTTGAAATTACAAGCAAAGATCCCATGCAAAGACGTATTCGACGGGCATGAGATTATTTCCAGAGAGGCGGCCACTAGATATATTCGCTGTTTGTCACAGgcctGTGGATGGACCTTTTTAATGGTAATAACTATAGCAGCCTTCCTGATAAGGGCGATAAGACCTTGTTTTACACAAGCCGCTTTTCTTAAAACCAAATACTGGTCGCACTACATCGATACAGAGCGCAAATTATTCGACGAAACGTGCAAAGAGCACGCCAAGAGCTTCGCCAAGGTCTGCATACAGCAATACTTCGAGAGCATCAGCGGCGAAATCGTTACGCAGTTCCAGCTGCCCGCGAAGAAAGGGAAAGGCAACAAAGACGAGGACGGGGAAAAGCAGAAAAGCGACGAGGAAAGGCTTCTCGGGATCCGTAAAGAAGACGACATGAATAAAGTCCTGTGGAACTGGCACACGTGTAAACCCGCGCTGTTCCTGAACAAACACGCTGAAAACAGGAGTATGAACGGACACGCCCACTTTGACACTCTCAGCCTCTCGGATGAGCGCTACACTCACACGCCTGtaaaaaacacagctgtggCATACTACTCCAAAGTCTGACTTCACACTTTAATCTTAGTCTGCTATAGCAGTACTCGCTCTCAAGATCCGATTTCTATTTATCGCCTGCCATTTCTTATTTGATGTCCTCCGAGACCCCGTAGTCATTGCATCCAGCCATTATAAAACAATGTTGTTTGTTACTAGAAATAAATGAGAACGTAACAGGA

Function

symbol description
calhm1 Predicted to enable cation channel activity. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CALHM1 (calcium homeostasis modulator 1).

NR:

description
PREDICTED: calcium homeostasis modulator protein 1-like isoform X1

GO: NA

KEGG:

id description
K19738 CALHM1; calcium homeostasis modulator protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256237.1 True 1317 mRNA 0.47 3 9412350 9414196

Neighbor

gene id symbol gene type direction distance location
calhm3 calhm3,LOC107726959,LOC107666391,LOC107743606,LOC107559321,LOC107578949 coding upstream 230 9409751 ~ 9412120 (+)
LOC122356356 gsto2,LOC107726960,LOC107666561,LOC107559318,LOC107601879,LOC107743609 coding upstream 7714 9401987 ~ 9404636 (+)
LOC122356357 gsto1,LOC107601880,LOC107726961,LOC107743610,LOC107559317,LOC107655421,LOC107666511 coding upstream 11996 9397489 ~ 9400354 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding upstream 15303 9390222 ~ 9397047 (+)
ap3m1 LOC107743512,LOC107655430,LOC107726964,LOC107559324,LOC107601875,LOC107666495 coding upstream 69806 9338278 ~ 9342544 (+)
LOC122357057 LOC107726934,LOC107666357,LOC107559322,LOC107601796,LOC107743586,LOC107601813 coding downstream 145 9414341 ~ 9416857 (+)
LOC122356913 LOC107559323,LOC107743586,LOC107666393,LOC107601813,LOC107726938 coding downstream 3963 9418159 ~ 9420475 (+)
si:dkey-51a16.9 si:dkey-51a16.9,LOC107559326,LOC107655434,LOC107743509,LOC107601881,LOC107666536,LOC108426796 coding downstream 8280 9422476 ~ 9428137 (+)
pkd2l1 pkd2l1,LOC107666396,LOC107726939,LOC107743506,LOC107559329,LOC107655425,LOC107601815 coding downstream 22485 9436681 ~ 9443708 (+)
bag3 LOC107726946,LOC107666417,LOC107655437,LOC107743505,LOC107601798 coding downstream 36984 9451180 ~ 9456908 (+)
G92147 NA non-coding upstream 136651 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 267839 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 314445 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 446761 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 515441 8836716 ~ 8896909 (+)
G92313 NA non-coding downstream 36250 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 65225 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 156793 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 178223 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 310200 9724396 ~ 9727967 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 248236 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 323229 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 384441 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 672255 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 729298 8666267 ~ 8683052 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 15982 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 790917 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 1002044 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1550659 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1799330 11213526 ~ 11218175 (+)

Expression


Co-expression Network