calhm3 (calhm3,LOC107726959,LOC107666391,LOC107743606,LOC107559321,LOC107578949)


Basic Information

Item Value
gene id calhm3
gene name calhm3,LOC107726959,LOC107666391,LOC107743606,LOC107559321,LOC107578949
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9409751 ~ 9412120 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256238.1
GTTTTAGCTAGTTTTAAAGGCAGGTGTTCGTGCGCGCATTTGGGTGTGGCTAAAGGAAGCAGGTGCGCGCGCCCTACAGGTGAACCCGTCACACTTCAGCACGCAGAGCTCGAGAGATGCTTGATATCCGTGAAACGTTCATTTACACGTGATCCATACAGTAATTACTatttttaggttaaattaaCCATTTCTAAACTaggtttttattctttttcgtCTTTTTGGCAGACTTGAACGGCGCAGATTTGAACGGCGTATTTGGCGGTCAGATATCAGATAAGTAGCCTCTTATCTGCAGCCTTTTATAGCGATAACCTAAACTAATAAATGGATCGTTTAAAGTTGGTTCTGCAGTATTTCCAGTCGAATTCTGAGTCCATCTCCAATGGTATCTGTATAGTATTGTCACTGATAAGCGTCAAGTTGTATACAAGTTTTGATTTCAACTGTCCCTGTTTACCGCAATACAATAAGATGTACGCACTAGGGGTCATGTTCGTTCCTCCAGTTATTTTGTTCCTTTTGGGAGTGTTAGTTAATCGCCATACTGGGGTGCTGATGGAGGAGTGGGTTAGACCCCTGGGCAGGAGGACAAAAAATCCAGCAGTGGTAAAGTTTTTGCTGTCATCAATGTTGCAACGGTCCCTTCTCGCCCCCATGGTCTGGATCCTGATGACACTCTTGGATGGAAAATGTTTCATCTGCGCATTTAGTATGAACGTAGACCCTAAATATTTTACAGGAATACCAAACAGCACTGGCCTGGAATTGATCAAGATCATGGCTAAGGTGCCTTGCAAAGAAGACGTCATCTTCAAGAACAGCAGTTTTCGGAAAGCTGTCTCACGCTACGTGCGTTGTTACTCTCAGGCAATAGGCTGGTCaatcctcctcttcttcatttTTTTGGGCACTGTTGGTCGTGTCCTAAAGCCTTGCTTCAATCACGCCACTTTTCTGCAGACACGCTACTGGAGCAACTACCTGGACATCGAGCAGAAGCTCTTCGATGAGACCTGTGTCCTTCATGCCAGAGATTTTGCCAGAAAATGCGTGGTGCAGTTCTTTGAAAGCATGCGAGAGGATGTGACTGTGAGGATGCCACTCTCAAGCGCATTCAGACCCAGCACGATCCGTAATGAGtatgaagaggaggaagaagaggagcgTCTGCATGGTATAACCAGGCATGATCAGGTGGACCACTTGCTGCAAACCTGGTATGAGTGCAAACCAGAACTGGACGTGACCAGGATGGCCTATAAGCCCAAAGTGTGTATCACGTGGGAAGATATTAATGGAAAGGCATTGTTCTCTGAAGTGTAAAGctgttggggaaaaaaaagtcataaaataaaaaatacctcttaaattagaattattgtcagttgtgaaatattaataaagatgTTGAAAAAATGTTGCCCctagaaatgtaataatttgagAACTAATTGACTATTTAACGTTATTTCAGTTAATCTTAAAAAGCTTGCATGTTGGTGGAATggatatataataattatgtataatttctGTCTTCATCAATATTGCAATGGGATTCCGGTGCAGTGATGCCTGAATGCAGAATGTTTCCTCTTCATAGAATGTAGAACCCAAACATTTTTCAATTGTAATGTTCAGAAAGCCTTGTTTTAACCTTCCTCGAGCGCCTGCATGCTTGTTCGTTTGAATATGCTGGGATttagtttgtgtatttttgcatGTCTCTTTCCACACACATTACACAACAACCTCATGGACAAGGCTTGGATGCAAATTACTACAGAACCCTGGCAACACCTGAagaaatttgttttatatgaatttgtatatatattgtgtgtgtatataaatatatctattaacaatattgattaataaaaca

Function

symbol description
calhm3 Predicted to enable cation channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CALHM3 (calcium homeostasis modulator 3).

NR:

description
calcium homeostasis modulator protein 3

GO: NA

KEGG:

id description
K19740 CALHM3; calcium homeostasis modulator protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256238.1 True 1891 mRNA 0.41 3 9409751 9412120

Neighbor

gene id symbol gene type direction distance location
LOC122356356 gsto2,LOC107726960,LOC107666561,LOC107559318,LOC107601879,LOC107743609 coding upstream 5115 9401987 ~ 9404636 (+)
LOC122356357 gsto1,LOC107601880,LOC107726961,LOC107743610,LOC107559317,LOC107655421,LOC107666511 coding upstream 9397 9397489 ~ 9400354 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding upstream 12704 9390222 ~ 9397047 (+)
ap3m1 LOC107743512,LOC107655430,LOC107726964,LOC107559324,LOC107601875,LOC107666495 coding upstream 67207 9338278 ~ 9342544 (+)
LOC122356812 LOC107725429 coding upstream 239498 9169279 ~ 9170253 (+)
calhm1 calhm1,LOC107726957,LOC107601812 coding downstream 230 9412350 ~ 9414196 (+)
LOC122357057 LOC107726934,LOC107666357,LOC107559322,LOC107601796,LOC107743586,LOC107601813 coding downstream 2221 9414341 ~ 9416857 (+)
LOC122356913 LOC107559323,LOC107743586,LOC107666393,LOC107601813,LOC107726938 coding downstream 6039 9418159 ~ 9420475 (+)
si:dkey-51a16.9 si:dkey-51a16.9,LOC107559326,LOC107655434,LOC107743509,LOC107601881,LOC107666536,LOC108426796 coding downstream 10356 9422476 ~ 9428137 (+)
pkd2l1 pkd2l1,LOC107666396,LOC107726939,LOC107743506,LOC107559329,LOC107655425,LOC107601815 coding downstream 24561 9436681 ~ 9443708 (+)
G92147 NA non-coding upstream 134052 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 265240 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 311846 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 444162 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 512842 8836716 ~ 8896909 (+)
G92313 NA non-coding downstream 38326 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 67301 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 158869 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 180299 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 312276 9724396 ~ 9727967 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 245637 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 320630 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 381842 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 669656 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 726699 8666267 ~ 8683052 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 18058 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 792993 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 1004120 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1552735 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1801406 11213526 ~ 11218175 (+)

Expression


Co-expression Network