chst3a (chst3a,LOC107708342,LOC107588701,LOC107673894,LOC107683746,LOC107585362,LOC107716304)


Basic Information

Item Value
gene id chst3a
gene name chst3a,LOC107708342,LOC107588701,LOC107673894,LOC107683746,LOC107585362,LOC107716304
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10681748 ~ 10689438 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256246.1
ATATATTTTAGTGATCCCATTGGGGTCATTCGGTGCACTACAGCATCACATCAAGTGTAcgaaatgtagaaaaaatgcacgaaactataaataaataaataaataaaaataagacagtAGCCTGCCTATATCAATCTGTGCATCACACGTTACtacattcaatttaattacTGATTGCCAGCGGTtttatcttaatatatatatataaaaataaatagcccTAAACAGTAATACGCTACGTTACaatctcttaaaaaaaatttcattgtCATTTATGGTTTACTCCGCAGCTTCACGATTTACATGATTTAgaaggtatttttttaaagggacacTAAAATGCGTTGTAATTCGCACAATCGAGGTTTGCCCCATTCATTCAGCAAGTGCACTCCGTGAAGCAACGCGGCGTGTTTTATACCCCTCGGTTTCCCACTGCAAAAAGGGGGATGAAGGAATCCACGTAGGAGTGTCCCAGGGCCCTCCTCAAACAGAAAAGCCCTTGTGAACGCTCACACTGGGGGTTCTTACTTGTTGACCACGTGACGTGTATCCAAGGATAGCCCAAACTTGGGAGACCGCCGAGAAATGGACACGTTTCCAGCACGCTGCACCGGAGAAACGCGCAAATGGAGATACATGAATAAGGGGCTTTCTTCAATGCCGTGAGAATCTGGAAATAACTTTAGGACCCTTCGGTTTCATGAGTTACAGCAAAAATGTCTGTAAAGCTGGAACTTTCTTAACAATGACTGATCTCCTTTTGTTCGTGGAAATAACGGGCTAGCCTATGAAGTGTTATCAAGTAATAACTTAATAGTGTAATTAGCGCTTTCACTCACGCACTTCTTTGGAGTCTTGACATAAACGCAGGGACAATGTGTGCCAGACGCGATCATTCAGGATGCTCCAGATGAACTACTGGAGACCCGTTCAGTCTTTAAGATGAATTGAACCCAGGTTCTGACATGAGATGAACCCAAAACGGTTGGCAGCAGCGACGAATTAGCAGTCTGTGGAGGCATTTCCTAAATCAAAGTTAATTTGAGAATGAGGAACAAGTATGCAGTCATCATTATCTGCATTGTGGCACTTGTCAtcattgaaaaagaaaacaacattatttcaaGggTCTCAGACAAGCTGACACTTCGACGGACCCCTCAgacagagcctccagtgccctaCAATGCTTCCAGCAGTCTGGTAGTAATGGACTACAACAGTTCCTACCCAGAGGACGTGTATGCTGAGAACGCCATTCAGGCTGGTCGAAAGCACATCCTCTTGATGGCTACCACTCGTACAGGATCTTCCTTCGTGGGCGAGTTCTTCAACCAACAAGGCGCCAACATGTTTTACCTCTTTGAGCCGCTGTGGCACGTGGAGAGGATGCTATCGATTGGCTCAAGTGGCACGAATGCCAGCACTTCTGTTTGGGTGTACAGAGATGTCCTGCAGCATCTCTTCTTGTGTAACTTCTCCATGTTGGAGCGCTTTATCAGCCCTCCTCCGCGGGACCACGTCACCCCTTCCCTGTTCCGCAGAGAGTCCAGCAAGGCCCTGTGCGAGGAGCAAGTCTGCTCTCCGGTTGTAAAAGACGTTTTTGAGAGGTACCACTGCAAGACGAGACGATGCGGGCCGCTCAATCTGACCTTGGCTTCCGAGGTCTGCTCAGGAAAACAGCACAGGGTGATCAAAACAGTGAGGGTCCGACAATTAGACACACTTCGTTCTCTAATAGAGGACCGTCGGTTGGATATCAAACTCATTCAGCTGGTTAGAGACCCTCGAGCCATCCTGGCATCAAGGATGGTGGCCTTTGCAAGTAAGTACCAGAACTGGAAAAGCTGGGCAGTCAATGGAGAAATTCCTATAGAGGACGAAGAGGTCAAACGTCTCGAAGGAAACTGTAACAATATCCGCATCTCTGCCGAGTTGGGTTTGAGTCAACCGGAGTGGCTGAAAAACCGTTACATGTTAGTACGTTATGAGGATATCGCCAGGTACCCCATGCTGAAAGCAGCAGAAATGTACAATTTCACAGGGATTCCGATGACCACACAAGCACGGGATTGGAtcctcaaaaacacacacgcgtCGACCGAGGCAAGCGGTGTGTATTCCACCCAAAAAAACTCTTCAGAACAGGTGGAGAAATGGAGGCTTAGCATTCCGTTCAAACTGGCCCAAGTTGTACAGAAAGTTTGTGGACCGACCATGAAACTTTTTGGGTATAGGTTTGTAGACAGTAAACAGACACTATTGAACAGATCTTTTAGTTTGcttgaagaaaaacaatttatttaggCAAGGATTGCATCTATGCATACATTGTTACAGGAAAACCAAGCGTGAAATGTGacaaggttttgtttttatatgtggACTAAAAAATATGCATAGCAGAGACACACTGGCACAATGTAGCACACTGGGATGTTGCTGAAATTATGAGTTATAATGACTGCAGATGCCgtcatatgaaaacaaaatttgaTGAGGATAAAATCATCTGTACTTATAAGATGAGACATGATCTGCCTGTGAATGTGTATAATTGTGTGCGAAACAGTGTTTCCTTTTTCTGAAAAAAGCTAAAAGATGATACAAAAATGGAAGTGAAACTGGTATTTATGTGTTGTGCTGCTGCTAAAATTACTTTTGATCACCATttcaaattgaaattaaatcccAAAAATTGGCTTTTGAGAGTTTGTCATCTCATTATTGTAAGatagaattttttaaatgcatctggaTATTATCAGACATTACCTGAGAACAAACTTGCACTGTGCGATGTGGCAGTCAGTATAAAAGGCAGCTTTTGACAGCCAGCTGTGATCCCAGAGTACAATCATAGCATTATTCTCTAAAAAACTGCAACGTAGAATAGACCTTTGTCCACGCatgttgttaaatgtttaatattataaacgttttttaaacacaaaaatcgAATATGagaagtaaaataataacaacagaaaCGGCAAAATACTGAAGAAAACACCAACACTGACTGTGTAGGCGCAGCAAACGAGGGAAAAAGCAGCACCAGTTTCTTTAGGACCCTTCAGTATTCTTTGGCTGGATTAATGGAactcttttaaaaaagcatagcATTCTTAAAATAGCTGAATAGCATTTAGTTTCAACTAAAGCCCTCATTTCAAAGCTATTTCAAAcatcacaatttatttttagaatggCCGTCTGTGAAATACTATTAGGAAACACACAAGGTCTTTTATCACTGCATGAAATCTACTGACCTTCTGGAAACAGTGATGTCTTTTCCTATCTCAGCACAGATTTACTGAGAACCAGTGATGTTCTCTCTGCACAAATTAAATGACTAATCTTAACTAAATAATTCCATCACCCTCAAACTATTTCCTGGCCACGTAGATACAGGATACAGTAGTATCTTCatgcttttgtgtttcatttccACTGCAAGCAAGAAGTACATCATGCACAATACATTGTACTTCACAGAAAGAGTTGCTTCTCAGAACAATAAgccacaaaaacataaattcatGTTTCTCTTTAATTGTACTGCTGCTATCTGTTTgccacaataaataatttaggaTCCGCTACCGCATTCACTGGCACTGTAAGATAAATGTGCTTTCAAGAATCTAACATCTGTTAAACAAAGAGCGAGAGCGGAGTGTCTGTCTACACGCTGGCATTTCACAAAATATGGGTTTATTATGATCCACCAGTTGCAATGTCCCTTGGAATCAGAATCCCCGATTTAATGAGTCTACGGGGAAATTTTATATTGACAAAAGCTGCCGCTCTGCTTCAGCGTGCTCGCTGTGATCGTCGCATAGCCTTCGTGAAAGCTGATTTCTACAAGCACAAACTGAAAAATCGGTTCTCTGAAGTGTACGATTTTGTGATTTCTGTTGCTAGTTCACGTTAAGGACACATGCAAATGCGTGTTTCGTTGACACAGGACTTTCCTCCCCACCAATCAATATCAAACACATCTCTGATGTCCGTACGTGCCATATGAAAACAAGTGTCACAGTTATTTCTTTTCTAAGTATGTTTTCTTTAAGTCGTTCCTGACTGATTTGGGACTACTGTGAGAGCGTTGTGCAGGCAGGGCAACAGGAAATCAGTCTCGaagtgtatgtgcatgtgttcCACTCTCTCAGGATGTGCCACACCTTCTAAGTGGAGCTCTGTCCACACTAGGGCTCAGACGGCCGTTGAACAGGCCTTTCATACTGTCTTTCCAAAGTTTCCAGTCTCTGAAGCACACAGCGCTGCCTGTTTACGGCTCAGAAGACTGCTGGCCTGCTAGAGCCTGAGCTGACTAATCACATGCAACACAGAGGGATTATTCCACTGACTCCAATTGACTTATTGATGCCATGCAAATAACGTGAGGGGAAAAATAACGTCTGAAACCGGACAAAAAGGTATTTGTGAGGGGAAGGTATTTTTGCTCGTGGAAAATAAAATCTCTTTTGGGATATTTCTGAGTCGTTGCTTAGTCATGCAGTGTTGATGTTTATCTTTAGTGTCTGGTTGAACTCTGCACTGGAAAAGCGCGGGGAAATACGTGGCTTgaccaaagagagagagagagagagagagttctgACTTGTCTGCTTATGCCAATAATTACCatcaacaaacaataaatacaggGCCTGGAAAACCCTCTGAATGGTGAAGAATCTATTCTTCATGATCTCACTACAATAGTTCGCCCCAAAATGA

Function

symbol description
chst3a Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and chondroitin 6-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and chondroitin sulfate biosynthetic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in head; pectoral fin; pharyngeal arch cartilage; and somite. Human ortholog(s) of this gene implicated in osteochondrodysplasia and spondyloepiphyseal dysplasia with congenital joint dislocations. Orthologous to human CHST3 (carbohydrate sulfotransferase 3).

NR:

description
PREDICTED: carbohydrate sulfotransferase 3-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01020 CHST3; chondroitin 6-sulfotransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256246.1 True 4752 mRNA 0.42 3 10681748 10689438

Neighbor

gene id symbol gene type direction distance location
lrit2 lrit2,LOC107707486 coding upstream 12859 10663971 ~ 10668889 (+)
lrit1a lrit1a,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643,LOC108442250 coding upstream 17988 10659603 ~ 10663760 (+)
ogdhl ogdhl,LOC107683740,LOC107707496,LOC108442924,LOC108263326 coding upstream 48505 10613939 ~ 10633243 (+)
parga parg,LOC107716337,LOC107673942,LOC107585315,LOC107708050,LOC107683745 coding upstream 70257 10584381 ~ 10611491 (+)
myofl LOC107707528,LOC107588650,LOC107673938,LOC107688302,LOC107716336 coding upstream 97927 10560676 ~ 10583821 (+)
pax2a pax2a,pax2,LOC101463634,LOC107707401,LOC107668824,LOC107588637,LOC107716343,LOC107585307 coding downstream 106644 10796082 ~ 10828360 (+)
cuedc2 cuedc2,LOC107585308,LOC107716345,LOC107673918,LOC107588639,LOC107707447 coding downstream 192481 10881919 ~ 10885510 (+)
dnajb12a dnajb12a,LOC107716349,LOC107668821,LOC107707369,LOC107673930,LOC107585300,LOC107588700,LOC108443064 coding downstream 226206 10915644 ~ 10919671 (+)
spock2 spock2,LOC107668819,LOC107673954 coding downstream 235496 10924934 ~ 10951268 (+)
pald1b pald1b,LOC107588630,LOC107707320,LOC107668836,LOC107716354,LOC107673876 coding downstream 279905 10969343 ~ 10981784 (+)
G92671 slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 non-coding upstream 36511 10642556 ~ 10645237 (+)
G92563 NA non-coding upstream 371972 10309237 ~ 10309776 (+)
G92552 NA non-coding upstream 405570 10275584 ~ 10276178 (+)
G92524 NA non-coding upstream 516092 10164559 ~ 10165656 (+)
G92513 NA non-coding upstream 610965 10068488 ~ 10070783 (+)
LOC122357062 NA non-coding downstream 63795 10753233 ~ 10763691 (+)
G92729 LOC107716350,LOC107673932,LOC107707381,LOC107588636,LOC107585302 non-coding downstream 131504 10820942 ~ 10947919 (+)
G92731 NA non-coding downstream 269982 10959420 ~ 10961696 (+)
G92746 NA non-coding downstream 293502 10982940 ~ 10983279 (+)
G92748 NA non-coding downstream 294800 10984238 ~ 10984645 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 261322 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 432023 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 1247143 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 1517634 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 1592627 9080848 ~ 9089121 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 275417 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 524088 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 566156 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 699947 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 882222 11571660 ~ 11592600 (+)

Expression


Co-expression Network