col17a1b (LOC107667282,LOC107743515)


Basic Information

Item Value
gene id col17a1b
gene name LOC107667282,LOC107743515
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9120348 ~ 9137429 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256250.1
acagaagaaagtcagaaAGAAAACAGCAGAAGTCAGGTAACAGCGTTCATACAGCACAGGTGAAGTTCACAGGCAACTCTTAAGCGGACCTTATCGAAAACCCCTTTCTCTTCAGATTGCCAAGGaccaaagCATGGAATGGATGATTTAAAACGGCAAAGAAACTATTCAGGAGGAAGTTCAGGAGATAGAGGTATCACGGAAACAACAGTCTCTACTAGTAGAATAACATCTTTACCTCCACGAGGCTTCAGTGCATCTTCCAACAAGGGCATGTCAAGCACTTCAGGGTCTTCTGGTTTGGAGAAGAACATTTTGACTCAAAACAACAGCAGTCCTTTTTTCTCATCCTCGTCTGTGGGTGTGAGTGCAGGTGGCTTAGGCTCTGGATCAGGGGAATATTTCTTAGAGGAGACCACAGTGAGCAGGAAGACTGGTGGTGGTGCTGGTGGAGTTTTCGAGAGTGTCTCTGGATCGGGAACAGGGTCGAGGGTGAGATCCACAGATGGCACGAGAAGAACGCAAGACTCCTCTATGTTTGTGGAGAGGAAAAGCAAAACTACTCATTCACGCCGTTATGATGgaaGTTCAAGTGACAACTCATCCCCAGAACTAAAACGAAAGGACTATGGTTCAAGTAGAGGAAGGAGTCAAAGCAGGGAGACGGAAATCAGGACCAGGCTACAGAGTGCATCTCCCTCCACTAGATGGACAGAACTGGACGATGTGAAGAAGCTGCTGAAGGGATCACGATCGGCCAGCGTCAGCCCCACACGAtctccctcctcctcccctCTCCCTATACCCCGCAAGGCCAGCACCTTAGACACCAAGGTCTCCACCAAGCAAGTCGAGCAATATGACACCACTATTCTTGACGCCGACCTGGCCTCATACACGTGGAACAGCTCTACACTGCCCTCTACAGTCTCCACTGGCGCTGCTTACGGCTTCCACAGCAACACAAACAACATGTCAACGGGAGCCACTCTTGTTAACAGCACATCACCATCCTCCTTATCAGTGTATGGCTTTCACAATAATTTAGCTCCTGTGAGCGGAGTTCTGACTTCCAGCGGAGTTAACACACACCCAGgatATGGAGTACAGAAGAATTATTTGACAAGTCCCAGCAGCACTCTCGGTGTTGGCACAGGCGTCTCTACTGCAGgaTATGGAGTGCAGAAGAATTATTCCTCAAGTCCCAACAGCACTCTTGCTGTCAGCACAGGCGTCTCCACCTCAGCTAGTGGTACAAGGACCCTTAATGAGAATGTGTCAAAGAGATACCTGACGCTGGAGAAAGAGAACATTCCAGTGAAGAGAGAAACTGAAGAGCTGATCCTGACCAAAGACAGTGGCAAGCAGTTTACAAACAGCACCCCTAACGGGACAGCAGGGTCGTATTCAGACGTTTCAGTGAAGAAGGAAACTATGATGACCAGCTATTCTGAAAGCGCTCCTGTGAAGTCTAGCTCTGGCACACACTATGGCTCTACATCAGCGTCAACAAAAGATAAAGCTACCTACGCAGAGATTCATAGGGCTAAGGTTGTTGATGACGACGATGGCTGTAATTGTGGAGGGGGTCTTTGTGGATGTGGGCCAGGCTGTTGTTCCTGGTGGAAGTGGCTGCTGGGGTTTTTGCTCAGCCTCCTGCTGCTCCTCGGCCTTCTCTTTGGACTCATTGCTTTATCTGAGGAAGTAAAGAAACTAAAGTCTCGTGTCAGTGTTCTTGAGGGAATATCCTCCTCCATGACAGCCCGCACGAGTCGTCTGTCCTCTTCTATTGATGACACTAGCATGTACAAAGACACTGGAAGTAAAGCGGCATATGTTAATTCACTGGATTCTGCAGTTTATTCAGACAATACTGTCCTTCAGAGAAATGTACAGGAAATACTGAAAGCAGAGATGAGCTCTGAAGCCATGAAAGCCTTTATTGCTTCTTCAGTTAAAGCTGAAAGAGGACTTCCAGGGCCTAAAGGTGACACTGGAACTCCAGGAACCAAGGgaGATAATGGTTTTCCAGGCCTGCCAGGTCCACCAGGAATGCCAGGACATCCAGGAAGAGAAGGGCAAAAAGGAAGTGCAGGTGAACGTGGTCCTGAAGGGCCACCAGGCTTCAGAGGAAGAGATGGTCAGCCTGGAACCCGTGGAGAGCCAGGACCCCCAGGGGCCGGAGAGAAGGGTGAAAGGGGTAATCCTGGTTCTCCTGGCTCTCCTGGTCTTATTGGTCTACCTGGGCCTAAAGGTGCTAGTGGTTTACATGgTGAACAAGGCCCTCAAGGCTTCAGAGGTGAACCTGGCCCTGTTGGTGCTAAAGGTGATAGAGGACTTCCTGGTACACCTGGAAATAAAGGTGATCATGGTGATAGAGGAGAAAGTGGACTGCCAGGTACTCCTGGTGTTTCAGGACGACAAGGCCCACCTGGAGAGAAAGGAGCTAAAGGATCAGCAGGGCCTCAAGGACTTGATGGTGAAAAGGGCCAAAGAGGTGAGCCAGGCTCAATTGGCTTACCAGGAATCAGAGGACCACCTGGACCACCCGGTGATCTTGGGCAACCAGGAACCCAAGGGATTCAAGGACCTCCAGGCCTACCTGGCAATCCTGGTCAGCCTGGAGCTAAAGGTGAGACTGGTGAACCTGGAAGAGTGATCAATGCAGctGGTTCTAGCTCAGTGGCTATACCAGGACCACCTGGAAGCCCTGGTCCTCCTGGCCCACCTGGATCTCCAGGACTCTCAGGACCCATTGGCCCTGCTGGACTTCCTGGTCATCCTgGTCCTAAAGGTGATAAGGGAGATCAAGGAGAACAGGGTATTGCTGTAAGTGCTGGCGAGACTTTGGTTGCAACGCGGGCAGAAAGACAGTATGGTGCTTCACATGTTGGTGTTACTGGACCACCTGGTCCTCCTGGTCCTCCAGGGCCTCCTGGACGTCCAGGCGATTCTAGACCAGGTCCACCGGGACCACCTGGCGAACCAGGTGCACCAGGATATGGCAGACCTGGTGCTAAAGGAGACAAGGGAGAACCTGGAAACTTTGTGCCTAATTCAGGAACATTTTTTGCGGGACCACCTGGACCACCAGGATCTCCAGGGCCTAAGGGAGCAACAGgCGCCCAAGGTCCAAGAGGATACCAAGGGGAACCAGGTCAGCCTGGCCTTCCAGGGAGTCCCGGTAGAGTTATCTCTGAGTACGGTGTGGCTCAGGGTCCACCCGGTCCCCCAGGACCTCCTGGACCACCAGGACGAGATGGAAGTAAAGGGGATCCAGGTGTACCAGGTACATCAACATTCAGAGGAGAATCAAGAGTATCAGGAGCAGTTGCAGTCGGACCCCAAGGGCGGGCTGGTCCCCCAGGACCACCTGGTCCACCCGGTCCTCCTGGTCATTCTAGTGGATCCCATTCTACTGCAGACTATCGTCGTTACATCATGGAGTATATGCAAAGTGACAGCATGAGGCAGCATTTGTCTGGTATTCAGGGACCACCTGGTCCACCTGGGCCTTCAGTGTCTGTAGAGGACGTGGCGTCTCGGGTTATTGCTTACATTCAGCGTTCTGGAATTAGCAGTAACAGTATTAGCCAAGGTCCACAAGGACCTGCAGGACCTCCTGGCCCACCTGGAAGTATAAGTGCTGAATACATCATTTCCCTTTTACAGAGAGAAGATGTGAGGCGTTATGTGactggccctccaggaccacCAGGTTCACCTGGCATTAGTGCTAGTACCTTTAGCGCACAGGAAGTGGCAAACTATGCCATCAGAATGATGAATGagcAAGGGATGACAGGCAGAACTGGAAATCCAGGTCCTCCCGGCCCACCTGGGCAGCCTGGTCAGCCAGGTGCTTCCTACAGTGAAATAACCACTCTGCTTCAGAGGTCAGGGCTTAGTGGAAGCATTGGACGTCCTGGGCCCCCTGGTCCTCAAGGTATACAGGGCCCCCCTGGTCCGCCTGGCACCCCAGGAGTCTCCTCCGCAGTCTCTGGTTACAAACTAGAGGACATCCAGCTCTATCTACAGCAGACTGGTTTTAGGGGACCTCCTGGCGTACCTGGCCCACCGGGACCACAGGGTCCTCCAGGAGACACTAGGGGCCTCGTATCATATTCAGGATCTTCTGCACGAGAACAGATCCGAGCTGAGCTGCAGGACTACCTGAACAGTGACACCATGAGGCGTTATATTCATGGCCCTCCTGGGCCTCCCGGACCGCCTGGTCAGAAGGGTGAACCTGGTGAAGTAAGACATAGTACCAGAAGCCAGTACCGCTATGGCTCTGAGATCAGTGAACCAGTGGACTACTCCAATGTTGCACTTAAAGTCACTGATTACATTAAGAATCAAGGTATACTGCAGGACCTGACAGAGGGATACTGGAGAACACAATCAGGAAGGATCCAAGGACCTGCTGGGCCTCCTGGTCCTCCCGGGCCACCCGGGTACAGCCGTGTGATTGGTGCCTATGGAAATGTGACGGCTGACTTGATGGACTTCTTTAGAACATACGGGACCATCCCAGGGCCTCCTGGCAGGCCAGGACCCAAAGGAGACAGAGGATACCCTGGTCCTAAAGGAGAAAAAGGGGAAATGGGGAGCTCAGGGATACCTGGCCTTCCGGGACAAAGAGGACCAGAGGGACCAAGGGGAGAAAAGGGTGAAAAAGGTGATATCCAGACTGGTAGGTGGAGTCGGACCAACGGTGTGTAAGGGCACACACATTTGCAGCGGCCCACTTTTGTGGATGCACTGATGGTTTAAAGAAACAACAGGTGTTTGTAAGAAGATCAATTTATAAACTAGCCTCTTTTTATGAAGTAACACAGTTCGGAGGCTCGTTTGGGTCCTATTTTATCACAGCATACAGTTTTATAATCAAATGCTTGCAATATTATAATCCATTCATTTCAAACAATTTTCAGCTTTACTAGCATGGGTTTAAGACATCAGTCTTAGTCTTCATTATCTAACAAATTTAATATAGCActtgaaatgtactttttaccCAGTAGTGGGCTTTGTAATTGCCtcgtttttggtttttttttgtattgtatgaATCTCGTCTATGGTGGTTTTGTTGAAAAGTAACATGTTACACAAAAAAGGGATCTTAAACACGAGTTTTTTTAGACCATGTATTGTAATGTGagttataaaaagtaaaaagccactgaatttttaacaaa

Function

NR:

description
PREDICTED: collagen alpha-1(XVII) chain-like isoform X1

GO: NA

KEGG:

id description
K07603 COL17A, BP180; collagen type XVII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256250.1 True 5204 mRNA 0.50 57 9120348 9137429

Neighbor

gene id symbol gene type direction distance location
cfap43 cfap43,LOC107743591,LOC107666552,LOC107601792,LOC107667278,LOC107578899,LOC107683315 coding upstream 4171 9103033 ~ 9116177 (+)
adam8a adam8,LOC107725440,LOC107666510,LOC107743615,LOC107676563 coding upstream 39604 9072842 ~ 9080744 (+)
msx3 msx3,LOC107743518,LOC107552925,LOC107601809,LOC107725487,LOC107666509 coding upstream 51604 9066080 ~ 9068744 (+)
echs1 echs1,LOC107601864,LOC107666378,LOC107676592,LOC107743519,LOC107725439 coding upstream 96662 9021295 ~ 9023686 (+)
lgalslb lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 99465 9013992 ~ 9020883 (+)
si:ch211-223p8.8 LOC107552909,LOC107743613,LOC107552922,LOC107667280 coding downstream 22218 9159647 ~ 9160722 (+)
dusp13a dusp13a,LOC107725429,LOC107666542,LOC107601810,LOC107743611,LOC107552920,LOC107671562,LOC108426746 coding downstream 28949 9166378 ~ 9169605 (+)
LOC122356812 LOC107725429 coding downstream 31850 9169279 ~ 9170253 (+)
ap3m1 LOC107743512,LOC107655430,LOC107726964,LOC107559324,LOC107601875,LOC107666495 coding downstream 200849 9338278 ~ 9342544 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding downstream 252793 9390222 ~ 9397047 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 22443 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 154759 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 223439 8836716 ~ 8896909 (+)
G92048 NA non-coding upstream 329296 8789731 ~ 8791052 (+)
G92047 NA non-coding upstream 331147 8788997 ~ 8789201 (+)
G92111 NA non-coding downstream 2788 9140217 ~ 9144511 (+)
G92147 NA non-coding downstream 126635 9264064 ~ 9275699 (+)
G92313 NA non-coding downstream 313017 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 341992 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 433560 9570989 ~ 9583671 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 31227 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 92439 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 380253 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 437296 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 809524 8306486 ~ 8310824 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 24088 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 292749 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1067684 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 1278811 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1827426 10964855 ~ 10968914 (+)

Expression


Co-expression Network