gfra4a (gfra4a,gfra4,LOC107693311,LOC107747595,LOC107695017,LOC107568637,LOC107733662)


Basic Information

Item Value
gene id gfra4a
gene name gfra4a,gfra4,LOC107693311,LOC107747595,LOC107695017,LOC107568637,LOC107733662
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5344526 ~ 5431348 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256275.1
CTCTCTGCTGTCAGTAGAGTTGGAGGGCAGAGCGCAGTGCTCTTACGCGTTCGGTGATTTGATGCCAGTGCAGTTCTCATGCGCTCAGGAGTTAGACAGAGAAGCAGCACCGGGCGGAAAAACAGCCGAATTCACTCCCGAACACCGGCACCGCTCTTCAATTAGCGTCTTGAGTGCTAATGAGGTTTTTAACGCAGCATCCAAACTTGGTAATGAAATAGTGCCGTTTCGTGACACTGATTTTGCGCAACTGTTTCCCTCGATCTGTCGCCAGATTTGCTGGGGAATAAAAGATGATTCTCGACGTGCTCTGTTCCTATGAAATGATTTGGATTGCGTCTCGCATTTTTGGAGGAAATCAGCACTGAACGCGGTACGACGTTTTCTGGACAACTTTGGTGCCAGCGGACACGGGCAGTCGCGAAAGTCTTTTACTGCCTCGAGATTGTTGGCTCTAAGCGGGATGGACCTCATCGGGCTCTGCTTGTTCCAGCTGGCAATTTTTGGGGTGCCGCGGCTGGTGTCTGGGGGCCGGTGGGACTGTCTGACTGCGGGGGATTCGTGCTCCAGCGACGAGGCGTGCAGCCCGCGCTTGAGAACGCTGCGGCAGTGTGTCGCAGGCGGCGGAAGCGTGAAGCTGGGTCCGGGGGCGCGCAACCACTGCGAGAACGCCGTGACGGCCCTGCTGTCTAGCCCTCTGCACCGATGCCAGTGCAAAAGGGGcatgaagagagagaagaactGTCTTAGCATCTACTGGAGCCTCAAGCAGTCCGTGCTGCACGGGCTGAGCTTGGTGGAGAATTACCCCTATGAGCCTGTCGAGCGGGGCTTTGATTATGTTCGCCTGGCCTCCATCGCTGCAGAGTCTGAGGTGGGCATGACAACAGTGAACCGTTGTTTGGACGCTGCTAAGGCCTGTAATGTGGATGAGACGTGTCAGAAACTACGCACGGAGTACGTGTCGGCTTGCATCGCCCCGTCGGCGCGAGCCGGGCCCTGCAACCGAGCACGCTGCAGCAAAGCACTGAGAAAGTTCTTCGACCGTGTGCCGCCAGACTACACACACGAGCTGCTCTTCTGTCCGTGCTCCGACACGGCTTGTGCAGAGCGACGGCGCCAGACCATTGTGCCTGCGTGCTCATATGAAGAAAGGGAAAAACTCAATTGCCTGGCACAACTTCGAGTTTGTGAGGCCGACTATGTGTGCAAGTCTCGCTGGGCTCAGTTCCAGCACGACTGCCAACCCTCCGAGCTTACTGCCAGCGGCTGCCAGCAAGAAAATTACGGAGCCTGCCTTGTTGCGTACACCGGCCTGATAGGTAGCATTATCACTCCAAACTACCTAGATAACTCTACATCCAATGTGGGACCATGGTGCTCTTGCGCAGCTAGCGGGAATTTCCGAGATCAGTGCAACCACTTCCTCAGCCACTTCCATGACAACAATTGCTTGAAGAACGCCATCCTGGCTTTCGGAAATGACACAGACCTGAAATCTGCGACCAACCAAGCTCCAGGCTCCAACACAAATACTTACAACCAGATCTTAGTTACCAGCACCGAGACCACCACTACCACCATTGGTTCTGGCGTGGAGACCGAGCAGAACATCCTCCGTCCACAGATGCCCACACAGATGAACGAGAGAGACAGACTGTGGGGCGACTCCACGCTCCCGTCCCCTGATCTCTATGACGCCAGTCCTGCAGCGGCCCACCTGGCCGTGGTAATGTGGCTCCTCCCCTTCCTGCTGCTGGCTCTCTAACTTTGAAATCAAGCAACCAATCAAAGCACCACAGAACTGGGACAGCGTGCGTGTATTCATGAGTTTCGACTTCCACATCACAATAACTTGTTCGGAGAGGACGCAAAAACCGCCAAACTCTCTAAATATATGAATCCCCGCTCCATTCCTCAATGCAACATAGTGATTCATTGTCTGGGTGTTCACGACTGATTTCAAGGGTTTAAATaattgtgtgtctctctctctttctctcttaatTTGAACTGAAGATGGTGCCCGTGTAAGATAAAACCCCTTCTCTTCAAAGCGAGAGACTGAAACATAGTCGACGGGTGGCTGAGTCATGCCTACTCTACAAATTtcgcacaaaaaaagaaagaaaaaaaaactaacataaaTTTCTACCTGTTCATCATCCATAATTGAATATCTATTTTTCCCCAGCTCTCTTGAAAGGATGGTGTTGATGCGTGTGCTGTATATTCACCCGGACAGAAGTGTGTTTTGTGATGTTTGCTCGAAGAAGCTGTAAGAGAAAGGAAACTGATGTGATGCACTAAAAGTGTCTGCCATGAGAGCTCTTTCAGCGGGTTAGAGAtgctctttatttttgtaacgtGGCTGTATTGTTTAGATGTAGGCCATTTCTCCCAGCAGTATCGGAGGGCACGGTTTTCTAAGAAAGTGGCACAGATATGAAGAGTGGAAGGACTTAAGTATCTTGATGAATGCCATGATCACCGAGCAGTTCTTGTATACTTCACCTGTGAATATGGGTGTCTGAAACACTGCATCAAACTGCTTATCGCAAATGGGAAAAGAAGCACAAAATATCCTGTTAAACATGTGAATTCAAGCAGCTTAATCCCATCTCCTTACTCACTGTTCGTCTCTTCCAATCAAAACGAGCACAACAAGGGTCTGTTGATTCTCTCCAATGACTGACGGCAGTTTTCTGCGTCCCCATCCTATGAGCACTCGGCATCTGcagttgtgttgcttttttattctcaaatgtcctgtgatgacaaacaaggtgagtgaaaaataaatgcgtTGACCTCTAACAACCTTCAGAGACTATTGACCAATCAGCGACCTGCATCACAAAACGAGGCAAAGCGTTTCTGTCAAATGGGTGGAAATTGTGGATTTTACTTGttatttcctgaaaaataaaCCTGTCAGATACGGATGTACTGAA
>XM_043256276.1
TCCTCTCTGCTGTCAGTAGAGTTGGAGGGCAGAGCGCAGTGCTCTTACGCGTTCGGTGATTTGATGCCAGTGCAGTTCTCATGCGCTCAGGAGTTAGACAGAGAAGCAGCACCGGGCGGAAAAACAGCCGAATTCACTCCCGAACACCGGCACCGCTCTTCAATTAGCGTCTTGAGTGCTAATGAGGTTTTTAACGCAGCATCCAAACTTGGTAATGAAATAGTGCCGTTTCGTGACACTGATTTTGCGCAACTGTTTCCCTCGATCTGTCGCCAGATTTGCTGGGGAATAAAAGATGATTCTCGACGTGCTCTGTTCCTATGAAATGATTTGGATTGCGTCTCGCATTTTTGGAGGAAATCAGCACTGAACGCGGTACGACGTTTTCTGGACAACTTTGGTGCCAGCGGACACGGGCAGTCGCGAAAGTCTTTTACTGCCTCGAGATTGTTGGCTCTAAGCGGGATGGACCTCATCGGGCTCTGCTTGTTCCAGCTGGCAATTTTTGGGGTGCCGCGGCTGGTGTCTGGGGGCCGGTGGGACTGTCTGACTGCGGGGGATTCGTGCTCCAGCGACGAGGCGTGCAGCCCGCGCTTGAGAACGCTGCGGCAGTGTGTCGCAGGCGGCGGAAGCGTGAAGCTGGGTCCGGGGGCGCGCAACCACTGCGAGAACGCCGTGACGGCCCTGCTGTCTAGCCCTCTGCACCGATGCCAGTGCAAAAGGGGcatgaagagagagaagaactGTCTTAGCATCTACTGGAGCCTCAAGCAGTCCGTGCTGCACGAGTCTGAGGTGGGCATGACAACAGTGAACCGTTGTTTGGACGCTGCTAAGGCCTGTAATGTGGATGAGACGTGTCAGAAACTACGCACGGAGTACGTGTCGGCTTGCATCGCCCCGTCGGCGCGAGCCGGGCCCTGCAACCGAGCACGCTGCAGCAAAGCACTGAGAAAGTTCTTCGACCGTGTGCCGCCAGACTACACACACGAGCTGCTCTTCTGTCCGTGCTCCGACACGGCTTGTGCAGAGCGACGGCGCCAGACCATTGTGCCTGCGTGCTCATATGAAGAAAGGGAAAAACTCAATTGCCTGGCACAACTTCGAGTTTGTGAGGCCGACTATGTGTGCAAGTCTCGCTGGGCTCAGTTCCAGCACGACTGCCAACCCTCCGAGCTTACTGCCAGCGGCTGCCAGCAAGAAAATTACGGAGCCTGCCTTGTTGCGTACACCGGCCTGATAGGTAGCATTATCACTCCAAACTACCTAGATAACTCTACATCCAATGTGGGACCATGGTGCTCTTGCGCAGCTAGCGGGAATTTCCGAGATCAGTGCAACCACTTCCTCAGCCACTTCCATGACAACAATTGCTTGAAGAACGCCATCCTGGCTTTCGGAAATGACACAGACCTGAAATCTGCGACCAACCAAGCTCCAGGCTCCAACACAAATACTTACAACCAGATCTTAGTTACCAGCACCGAGACCACCACTACCACCATTGGTTCTGGCGTGGAGACCGAGCAGAACATCCTCCGTCCACAGATGCCCACACAGATGAACGAGAGAGACAGACTGTGGGGCGACTCCACGCTCCCGTCCCCTGATCTCTATGACGCCAGTCCTGCAGCGGCCCACCTGGCCGTGGTAATGTGGCTCCTCCCCTTCCTGCTGCTGGCTCTCTAACTTTGAAATCAAGCAACCAATCAAAGCACCACAGAACTGGGACAGCGTGCGTGTATTCATGAGTTTCGACTTCCACATCACAATAACTTGTTCGGAGAGGACGCAAAAACCGCCAAACTCTCTAAATATATGAATCCCCGCTCCATTCCTCAATGCAACATAGTGATTCATTGTCTGGGTGTTCACGACTGATTTCAAGGGTTTAAATaattgtgtgtctctctctctttctctcttaatTTGAACTGAAGATGGTGCCCGTGTAAGATAAAACCCCTTCTCTTCAAAGCGAGAGACTGAAACATAGTCGACGGGTGGCTGAGTCATGCCTACTCTACAAATTtcgcacaaaaaaagaaagaaaaaaaaactaacataaaTTTCTACCTGTTCATCATCCATAATTGAATATCTATTTTTCCCCAGCTCTCTTGAAAGGATGGTGTTGATGCGTGTGCTGTATATTCACCCGGACAGAAGTGTGTTTTGTGATGTTTGCTCGAAGAAGCTGTAAGAGAAAGGAAACTGATGTGATGCACTAAAAGTGTCTGCCATGAGAGCTCTTTCAGCGGGTTAGAGAtgctctttatttttgtaacgtGGCTGTATTGTTTAGATGTAGGCCATTTCTCCCAGCAGTATCGGAGGGCACGGTTTTCTAAGAAAGTGGCACAGATATGAAGAGTGGAAGGACTTAAGTATCTTGATGAATGCCATGATCACCGAGCAGTTCTTGTATACTTCACCTGTGAATATGGGTGTCTGAAACACTGCATCAAACTGCTTATCGCAAATGGGAAAAGAAGCACAAAATATCCTGTTAAACATGTGAATTCAAGCAGCTTAATCCCATCTCCTTACTCACTGTTCGTCTCTTCCAATCAAAACGAGCACAACAAGGGTCTGTTGATTCTCTCCAATGACTGACGGCAGTTTTCTGCGTCCCCATCCTATGAGCACTCGGCATCTGcagttgtgttgcttttttattctcaaatgtcctgtgatgacaaacaaggtgagtgaaaaataaatgcgtTGACCTCTAACAACCTTCAGAGACTATTGACCAATCAGCGACCTGCATCACAAAACGAGGCAAAGCGTTTCTGTCAAATGGGTGGAAATTGTGGATTTTACTTGttatttcctgaaaaataaaCCTGTCAGATACGGATGTACTGAA

Function

symbol description
gfra4a Predicted to enable signaling receptor activity. Predicted to be involved in nervous system development. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human GFRA4 (GDNF family receptor alpha 4).
gfra4 Predicted to enable glial cell-derived neurotrophic factor receptor activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within negative regulation of ossification. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane.

NR:

description
PREDICTED: GDNF family receptor alpha-4

GO:      GO:0004872

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256275.1 True 2954 mRNA 0.50 8 5344528 5431348
XM_043256276.1 False 2875 mRNA 0.50 7 5344526 5431348

Neighbor

gene id symbol gene type direction distance location
cdc25b LOC107690144,LOC107733779,LOC107582534,LOC107567856,LOC107718443,LOC107678573 coding upstream 85317 5252901 ~ 5259209 (+)
sfxn5a sfxn5a,sfxn5,LOC107567846,LOC107733701,LOC107690191,LOC108262907,LOC100691010 coding upstream 131662 5198874 ~ 5212864 (+)
LOC122356791 LOC107733689,LOC107690150,LOC107582530,LOC107708385,LOC107678491,LOC106918274,LOC103144266 coding upstream 208296 5132489 ~ 5136230 (+)
mrps26 LOC107678578,LOC107690153,LOC107582565,LOC107733693,LOC107708396,LOC107567847 coding upstream 213079 5129847 ~ 5131447 (+)
si:dkey-33c12.3 si:dkey-33c12.3,LOC107582528,LOC107733690,LOC107690152,LOC107567853,LOC107678577 coding upstream 215669 5125547 ~ 5128857 (+)
ky LOC107666377,LOC107747591,LOC107556906,LOC107733664,LOC107695013,LOC107568638 coding downstream 136154 5567502 ~ 5574433 (+)
fgfr3 fgfr3,LOC107733743,LOC107666479,LOC107556915 coding downstream 277173 5708521 ~ 5740890 (+)
nsd2 LOC107747575,LOC107666517,LOC107556918,LOC107733764 coding downstream 363892 5795240 ~ 5807876 (+)
lrit3b lrit3b,LOC107556923,LOC107666384 coding downstream 498849 5930197 ~ 5935584 (+)
LOC122357047 enpep,LOC107747565,LOC107666571,LOC107585235,LOC107667073,LOC107733706 coding downstream 505053 5936401 ~ 5946902 (+)
G90905 NA non-coding upstream 308410 5035359 ~ 5036116 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding upstream 330864 5003410 ~ 5013662 (+)
G90888 NA non-coding upstream 379511 4964702 ~ 4965015 (+)
G90700 NA non-coding upstream 872782 4471065 ~ 4471744 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding upstream 878658 4459639 ~ 4465868 (+)
G90985 NA non-coding downstream 70294 5501642 ~ 5505510 (+)
G90997 NA non-coding downstream 92397 5523745 ~ 5525112 (+)
G91003 LOC107556907,LOC107666376 non-coding downstream 109144 5540492 ~ 5597345 (+)
G91124 NA non-coding downstream 333358 5764706 ~ 5765211 (+)
G91126 NA non-coding downstream 336826 5768174 ~ 5768524 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 73279 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 146122 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 346535 4992153 ~ 4997991 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other upstream 648684 4561648 ~ 4695842 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 990595 4182499 ~ 4353931 (+)
lamtor3 lamtor3 other downstream 519869 5951217 ~ 5952517 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other downstream 551170 5982518 ~ 5986979 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 823255 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 1661796 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 2340212 7771560 ~ 7787307 (+)

Expression


Co-expression Network