atl1 (atl1,LOC107705445,LOC107602974,LOC107736665,LOC107682422,LOC107553217)


Basic Information

Item Value
gene id atl1
gene name atl1,LOC107705445,LOC107602974,LOC107736665,LOC107682422,LOC107553217
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14268377 ~ 14276439 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256281.1
AGCGCCACTAGGCGGTCCAATAGCGCGCTGCACATTTGTTTCAGATGAGAATGAGCCTCCATCACTGGCAGCGGATTTCCAGCATCGCATTCGTCTCATGATCGCTGTTTAGAACCGAACCGACCCGAATACTAAACAGAGCACCCGGCGagacatggcacgagacaaaaaggACAGAGACAGCTGGGGGTCTTTCGTGGATAAGAACGTGTATGACTGGAgctcagaggaggaggagacggaCGGACGGGCACGTCCGGTGCAGGTGCTGGTGGTGAAAGATGACCACACGTTTGAGCTGGACGAGGCAGCGCTTAGTAAGATCCTGCTGGCTGAAGAGGTCAGAGACAGAGAGGTGGTGGCCATCTCGGTGGCAGGAGCCTTCCGCAAGGGTAAATCTTTCCTCATGGACTTCATGCTGCGTTACATGTACAGCCAGGCCAGTGATAAGTGGCTTGGGGACCCAGATGAGCCACTGACGGGATTCTCATGGAGAGGGGGCTCTGAGCGGGAGACCACTGGCATTCAGATCTGGAGTGAAGTCTTCTTGGTGGACAAACCAGATGGTAGCAAAGTGGCAGTGCTGCTAATGGACACACAGGGGACCTTTGACAGCCAGTCCACTCTCCGTGACTCAGCTACTGTATTTGCTCTCAGTACTATGATCAGCTCTATGCAGgTATATAACATATCTCAGAATGTTCAGGAAGATGATCTTCAGCATCTTCAGCTTTTCACTGAATACGGTAGACTGGCCAtggaagaaacatttctcaaacCATTTCAGTCAATGATCTTTCTGGTGCGGGACTGGAGCTTTCCATATGAGTTTCCCTACGGACAGGAAGGAGGAATGAAATTTCTGGAGAAAAGGTTAAAGATCTCAGAGAATCAACACGAGGAGCTGCAGAACGTGAGAAAACACATCCATTCCTGCTTCACCAACATCTCCTGTTTCCTCATGCCACACCCGGGACTCAAGGTGGCCACAAACCCACACTTTGACGGCAGATTGAGGGAGATCGATCAAGACTTTATTGATAATCTGCAAGTGCTTGTTCCGTGGTTACTACGCCCCAAAAACCTGGATGTGAAAGAGATAAATGGAAGCAAAATCAGTTGCCGTGGACTTCTGGAGTACTTCAAGGCATATATCAAGATTTACCAGGGAGAGGAGTTGCCACATCCAAAGTCAATGTTACAGGCCACAGCGGAAGCAAATAATCTGGCTGCGGTGGCTGCAGCTAAAGATCTCTACAACAGGAAGAtggaggagGTGAGCGGAGGAGATCGGCCTTTCCTCGCACCGAGCGAGCTGCAGACGCGTCACTTGGCCATCCGCGAGGAGGCGTTGACGTTGTTCCGCAGCGTGAAGAAAATGGGCGGCGAGGAGTTCAGCCGGCGTTACCTGATGCAGCTGGAGGCGGAGATCGACGAGCTGTTTGTCCAGTACATCAAACACAACGACTCCAAGAACATCTTCCACGCGGCACGAACACCCGCGACGCTGTTCGTGGTGATCTTCGTCATGTACGTGGCCGCGGGGATCACGGGGTTCGTGGGTGTTGATATCATCGCCAGCATCTGCAACATGGTGCTGGGCTTTGCTCTCATCACTCTGTGCACCTGGGCGTACATCCGCTACTCGGGAGAATACAGAGAACTGGGCGCCGTCATTGACCAGGTGGCTGGAGCGCTATGGGATCAGgGAAGCACAAATGAGGCTCTGTATAAGCTGTACAGCGTAGCGGCAAACCACAGGCAGCTGTATAATCACGCCTTCCCTGGACACCAGACTGACCAACAGCAGCCCGAACAGGACAAGAAACAAAACTGACCCAACACAGTTCACGCAGATGCACTGTGGACAGTGACAGTGGAGCGTAcagtcagagagagaaagagacgcGGGACTGTTTAACGCTACAACAGAAACATATCACCGCCATCACCCACCACAGCAACATCCTTGCACCTACAGCCCAGGCCCATGGTCAGACGCTGTGGAGAATCAGACTGAAACGATTCGGTCTGACTGTGTTGCTTGTGCCTGCGTTAGAAAATCACAGCATTAGTTCTGACAGTTCACCATTTTGTCATCTCCTCACTGTAAAtactgtttctctctctgacacTCACATGAAAGCGGTCTGTGCTTATTTTGTAATGGATGTCGTACGTTGAGTTCAGTGCTATTTATAAGGGAATAAAATACtacatgtttaaaaaca

Function

symbol description
atl1 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within axon guidance; determination of dorsal identity; and negative regulation of BMP signaling pathway. Located in late endosome. Is expressed in brain; primary motor neurons; and spinal cord neural tube. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D and hereditary spastic paraplegia 3A. Orthologous to human ATL1 (atlastin GTPase 1).

NR:

description
PREDICTED: atlastin-1

GO:

id name namespace
GO:0048263 determination of dorsal identity biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005770 late endosome cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17339 ATL; atlastin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256281.1 True 2231 mRNA 0.51 14 14268377 14276439

Neighbor

gene id symbol gene type direction distance location
dmac2l atp5s,LOC107705443,LOC107602971,LOC107654946,LOC107736634,LOC107553216 coding upstream 32344 14232374 ~ 14236033 (+)
LOC122356518 LOC107705440,LOC107654948,LOC107736540,LOC107682154,LOC100538248 coding upstream 58992 14200850 ~ 14209385 (+)
cnih1 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 72125 14191182 ~ 14196252 (+)
LOC122356869 ttc9,LOC107602957,LOC107553202,LOC107654962,LOC107739879 coding upstream 252507 14012249 ~ 14015870 (+)
si:ch211-67f13.7 LOC107602918 coding upstream 331508 13930623 ~ 13936869 (+)
tmx1 tmx1,LOC107654918,LOC107602932,LOC107736746,LOC107683560,LOC107705366 coding downstream 63452 14339891 ~ 14344861 (+)
esr2b LOC107736782,LOC107683586 coding downstream 101155 14377594 ~ 14393187 (+)
gphb5 gphb5,LOC104954562 coding downstream 208627 14485066 ~ 14487500 (+)
phf3 LOC107665590,LOC107726593,LOC107602981,LOC107736851,LOC107683665,LOC107553234 coding downstream 343726 14620165 ~ 14630849 (+)
zgc:171579 zgc:171579,LOC107665586,LOC107568696,LOC107736860,LOC107747305,LOC107579559,LOC107664312 coding downstream 563343 14839782 ~ 14842432 (+)
G93736 NA non-coding upstream 18855 14248765 ~ 14249522 (+)
G93733 NA non-coding upstream 22835 14243408 ~ 14245542 (+)
G93723 NA non-coding upstream 40666 14224983 ~ 14227711 (+)
G93592 NA non-coding upstream 107057 14031382 ~ 14161320 (+)
G93685 LOC107553176,LOC107654957,LOC107705429,LOC107602958 non-coding upstream 177145 14090525 ~ 14091232 (+)
G93743 NA non-coding downstream 176 14276615 ~ 14276875 (+)
G93745 sav1,LOC107705447,LOC107654943,LOC107736858,LOC107602931,LOC107682971,LOC107553191 non-coding downstream 6330 14282769 ~ 14284777 (+)
G93755 NA non-coding downstream 30557 14306996 ~ 14308382 (+)
G93766 LOC107705365,LOC107736713,LOC107553220,LOC107683494,LOC107602921 non-coding downstream 42341 14318780 ~ 14322084 (+)
G93818 NA non-coding downstream 255583 14532022 ~ 14532317 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other upstream 79384 14185315 ~ 14188993 (+)
G93613 NA other upstream 358774 13739607 ~ 13909603 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other upstream 507643 13749135 ~ 13760734 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 1109937 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 1679379 12586886 ~ 12588998 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 77676 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 830019 15106458 ~ 15226722 (+)
fam135a LOC107747270,LOC107665594,LOC107736843,LOC107664195,LOC107564672 other downstream 978635 15255074 ~ 15275234 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other downstream 1019410 15295849 ~ 15314656 (+)
LOC122356934 LOC107747267,LOC107665602,LOC107601027 other downstream 1038375 15314814 ~ 15318177 (+)

Expression


Co-expression Network