cdkl1 (cdkl1,LOC107705442,LOC107736652,LOC107553215,LOC107602970,LOC107683176,LOC105890986)


Basic Information

Item Value
gene id cdkl1
gene name cdkl1,LOC107705442,LOC107736652,LOC107553215,LOC107602970,LOC107683176,LOC105890986
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14236100 ~ 14243270 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256283.1
tcaagattttttaatattttcttttgtaaaaaatatgtaaacttacattgtgattagtaatatgcatggctaagaactttatttggacatctttaaaggcaattgtctctatatatgtttttttgtgcaccaTCAGATTTACTCATTTTCAAAAAGGCTAGTTGTATCCGTCAGTTATTGTCCTGTCCCAGGGGTGGGGATCGTTGATCCTGGAGGACCTGTATCCCTGCAGATTTTGCTTTAACTCGCATCAAACACACTCCTACCAGCTAATCATGTCTTCAATAGGCCTGTtgcaataatcaatatattgaCTTATCGCACAATATATGTACATGATTTCAATAATCTTTGGTGATGCAATATATTGCccattatatttaacatttaaaaaaaatatatagaaaactCAATTCCATTTGCACCTATGTCTTTTGCAGCTTCTTGTACGTGATGTGGTGTGGTCATGAGGtgctaattaaaatttaaaaaaatcctataaAAGTTTAGTCTGCAGCTGTGGCCTTATACAGAGGTCTGACTGCTAAATAAGGATTGTGTTTTCAGCAATAGTGTGCACCCTTACTTTTCAGagaaaaatgaaatcagcataaAAGTTCTTATCTTTTTCTACTTGTGAATTTACTATAGCTTTCTAAggtatctaatattttattaatttccatgatctattttttttttttaagaattaaatgtttgCTGTCAAGTGTGTAGGCCTTCTTGCATTATTACGCtgtttatatatgattatacattcagtggtgtaaaataataacaataatatctCAAATAAAAGTTGTCAATGTGACAGGCCTAGTCTTTAGGAtgcaattctgtttttttttttttttttcgtgattGGATCTAAACTCAGCGGAGgagtggccctccaggatccCCACCCCTAACCTATCCTAACAATCCAACCATCAatggaaaatgtataaatgtcgatttcaaaactgtttttgtggtccagggtcacatatagcgtacttttttaattttattacaactaCTACCAAAAAGTCTGCGGTGTGTGCTTTAATCAACAGAGGGgctgtttttaatgtgaaataatattatctGGTACATATACGTGCGAGAAAGCGAACCGAAACTTATTTTAACCTTTATTGaggcaagttttttttttttttcccccgacTTCTGCGCGTGCGCTTGTCACCTCACGCTCAGGCACGGTGTTGTGTGCGCGCCTGTGTACaggtggggggaaaaaaactgcgTGACATTTAATTTATGTCATCGGATGCACGGATTTACAGTCCCGCTGCTCTCTCCTCGTAAACGGCTGATCTGAGGTCGGATAGTTTCGCGCTTGCAGCGTGTTGCTGTGCAGATTGAAGCGCGCGCGCGCGGAGCGGAGGCGGCGTCTCCGCTCGGTTTCTATGGCGACCGGCGGCTTGTAAATAGCGTGTTTTCTTCTCCATGCGAACTCAAACACATTCTCACGGTGCGCGGACACACGGCTCTTTCTGTCCGTCAGACTCGCACGACACCACACGGCTCCGGGTATCTGACAAATTTTGATCTCGCGAAGTCGCTATTTGTGCTCGCTTTAATCGAAAAGCAGCTATTTGGATGAGACTTTGGAAGTTTTTCAGATTTCAGTTAACCTCAAGGTGAGGCAGTATCATACGTGTGTTCTGCTGGTGTCGCAGAGATGGAGAAGTACGAGAAGATCAGTAAGATCGGCGAGGGCTCGTACGGGGTCGTGTTCAAGTGCAGGAATAAAGACACCGGACAGATTGTGGCCATCAAGAAGTTTGTGGAGTCTGAGGATGATCCCATCATTAAGAAAATAGCACTGAGAGAAATCCGCATGCTGAAGCAACTGAAACATCCAAACCTGGTGAATCTGATCGAGGTGttcagaagaaagagaaaactgCACCTGGTGTTTGAGTACTGCGACCACACCGTCCTAAATGAGCTGGACAGATACCCAAGAGGCGTTCCAGAGCACATGGTTAAAAGCATCATCTGGCAAACACTTCAGGCTGTGAACTTCTGCCACAaacaaaattgtatCCACAGAGATGTGAAGCCAGAAAATATCCTCATAACCAAACATCAGGTCATCAAACTCTGTGACTTTGGCTTTGCCAGGATCCTCACGGGTCCATGTGATTATTACACGGATTATGTAGCGACGCGGTGGTACCGAGCTCCAGAACTGCTTGTAGGAGACACACAGTACGGCCCACCAGTGGACGTCTGGGCAGTAGGCTGTGTGTTTGCAGAGCTGCTCTCTGGTGCCCCTTTATGGCCAGGCAAATCTGATGTAGACCAGCTGTATCTGATCAGGAAAACTCTGGGTGAGTTGATTCCTCGACACCAGCAGGTGTTCAGCACTAACCAGTTTTTTAGCGGAGTTTGTGTCCCTGAACCACAGGAGATGGAACCTCTTGATCTGAAGTATCCAAATATCTCGTACCAGGCGCTGAGCCTCATGAAGGGTTGTCTGCGGATGGACCCGGCCGAGAGGTTGTCCTGTGAGCAGTTGCTGGAGCTGCCATACTTTGACAGTCTGAGAGAAGAGAGCGAAAGTGTGACACGTGAACTGGACCGCAAGAGACGCACACGCCAGCCGCGCAAACACCTGCCTCCTGGGTATCTGCCTCAGTTGGCCAGCAGTACTGTCTTCCCAGCCgtggaaaacagaaaatactaCAACCTGCGCAAATTCAACTACCATCTACCCAACATATGATGAACATCCACTCATCAGGAACCCGAGAACCGACTGACCACCTCccagctggtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagatagacaaaGGGCTCTGCTCTGCCTGCAAAACAATGATGTCACACTGCCAAAGCAAAGACTCACAGAGGCATTTCTGTAATATGTAAAATgacaacagcaataataatagcgTTAAAACTGAATGCTGTGCTGTGTATAGTTTGATTAGAAACTGACTTCAGTGCTGTAGAAGAGTTTGCTCTGTgggacagatttttttttacctctgtTAGATCCACATAATTGCTTTATATTATAAACCTTAATGTTTGAAGTGTGTATATGTGACTTAAATCATTTCCAGGGGTGTAACCAGACCCAGACAgaatttttcagattttctgtaGATAAAAGACTGGTATTTTGCCGtatggattttaaaaatctgaattcaAGCATGATCAAATtagccaaaatatttattaaatggaaGTGTTTTGGGATGAATAGATCTTGGAACAGAAATAAGCAGAAATCTTTCTGTGTGGGCCTGGACATAACTCTGCATATTGTTTAACATTTAGTACCTTATTATGAACATAATGAACTTTTTGTTGCCTTTAAGAGCGGTGCTATTAATTGAGCCACTGACTTGCACCAAATGCCAAATTCAATGTGatttgcaaatgtgttttttgtgttaaaatagatgtaaaatgaaatagttttggtttgttttcagaCTAAATCATTAAAGATCTTTCTGCGATATA
>XM_043256284.1
tcaagattttttaatattttcttttgtaaaaaatatgtaaacttacattgtgattagtaatatgcatggctaagaactttatttggacatctttaaaggcaattgtctctatatatgtttttttgtgcaccaTCAGATTTACTCATTTTCAAAAAGGCTAGTTGTATCCGTCAGTTATTGTCCTGTCCCAGGGGTGGGGATCGTTGATCCTGGAGGACCTGTATCCCTGCAGATTTTGCTTTAACTCGCATCAAACACACTCCTACCAGCTAATCATGTCTTCAATAGGCCTGTtgcaataatcaatatattgaCTTATCGCACAATATATGTACATGATTTCAATAATCTTTGGTGATGCAATATATTGCccattatatttaacatttaaaaaaaatatatagaaaactCAATTCCATTTGCACCTATGTCTTTTGCAGCTTCTTGTACGTGATGTGGTGTGGTCATGAGGtgctaattaaaatttaaaaaaatcctataaAAGTTTAGTCTGCAGCTGTGGCCTTATACAGAGGTCTGACTGCTAAATAAGGATTGTGTTTTCAGCAATAGTGTGCACCCTTACTTTTCAGagaaaaatgaaatcagcataaAAGTTCTTATCTTTTTCTACTTGTGAATTTACTATAGCTTTCTAAggtatctaatattttattaatttccatgatctattttttttttttaagaattaaatgtttgCTGTCAAGTGTGTAGGCCTTCTTGCATTATTACGCtgtttatatatgattatacattcagtggtgtaaaataataacaataatatctCAAATAAAAGTTGTCAATGTGACAGGCCTAGTCTTTAGGAtgcaattctgtttttttttttttttttcgtgattGGATCTAAACTCAGCGGAGgagtggccctccaggatccCCACCCCTAACCTATCCTAACAATCCAACCATCAatggaaaatgtataaatgtcgatttcaaaactgtttttgtggtccagggtcacatatagcgtacttttttaattttattacaactaCTACCAAAAAGTCTGCGGTGTGTGCTTTAATCAACAGAGGGgctgtttttaatgtgaaataatattatctGGTACATATACGTGCGAGAAAGCGAACCGAAACTTATTTTAACCTTTATTGaggcaagttttttttttttttcccccgacTTCTGCGCGTGCGCTTGTCACCTCACGCTCAGGCACGGTGTTGTGTGCGCGCCTGTGTACaggtggggggaaaaaaactgcgTGACATTTAATTTATGTCATCGGATGCACGGATTTACAGTCCCGCTGCTCTCTCCTCGTAAACGGCTGATCTGAGGTCGGATAGTTTCGCGCTTGCAGCGTGTTGCTGTGCAGATTGAAGCGCGCGCGCGCGGAGCGGAGGCGGCGTCTCCGCTCGGTTTCTATGGCGACCGGCGGCTTGTAAATAGCGTGTTTTCTTCTCCATGCGAACTCAAACACATTCTCACGGTGCGCGGACACACGGCTCTTTCTGTCCGTCAGACTCGCACGACACCACACGGCTCCGGGTATCTGACAAATTTTGATCTCGCGAAGTCGCTATTTGTGCTCGCTTTAATCGAAAAGCAGCTATTTGGATGAGACTTTGGAAGAGATGGAGAAGTACGAGAAGATCAGTAAGATCGGCGAGGGCTCGTACGGGGTCGTGTTCAAGTGCAGGAATAAAGACACCGGACAGATTGTGGCCATCAAGAAGTTTGTGGAGTCTGAGGATGATCCCATCATTAAGAAAATAGCACTGAGAGAAATCCGCATGCTGAAGCAACTGAAACATCCAAACCTGGTGAATCTGATCGAGGTGttcagaagaaagagaaaactgCACCTGGTGTTTGAGTACTGCGACCACACCGTCCTAAATGAGCTGGACAGATACCCAAGAGGCGTTCCAGAGCACATGGTTAAAAGCATCATCTGGCAAACACTTCAGGCTGTGAACTTCTGCCACAaacaaaattgtatCCACAGAGATGTGAAGCCAGAAAATATCCTCATAACCAAACATCAGGTCATCAAACTCTGTGACTTTGGCTTTGCCAGGATCCTCACGGGTCCATGTGATTATTACACGGATTATGTAGCGACGCGGTGGTACCGAGCTCCAGAACTGCTTGTAGGAGACACACAGTACGGCCCACCAGTGGACGTCTGGGCAGTAGGCTGTGTGTTTGCAGAGCTGCTCTCTGGTGCCCCTTTATGGCCAGGCAAATCTGATGTAGACCAGCTGTATCTGATCAGGAAAACTCTGGGTGAGTTGATTCCTCGACACCAGCAGGTGTTCAGCACTAACCAGTTTTTTAGCGGAGTTTGTGTCCCTGAACCACAGGAGATGGAACCTCTTGATCTGAAGTATCCAAATATCTCGTACCAGGCGCTGAGCCTCATGAAGGGTTGTCTGCGGATGGACCCGGCCGAGAGGTTGTCCTGTGAGCAGTTGCTGGAGCTGCCATACTTTGACAGTCTGAGAGAAGAGAGCGAAAGTGTGACACGTGAACTGGACCGCAAGAGACGCACACGCCAGCCGCGCAAACACCTGCCTCCTGGGTATCTGCCTCAGTTGGCCAGCAGTACTGTCTTCCCAGCCgtggaaaacagaaaatactaCAACCTGCGCAAATTCAACTACCATCTACCCAACATATGATGAACATCCACTCATCAGGAACCCGAGAACCGACTGACCACCTCccagctggtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagatagacaaaGGGCTCTGCTCTGCCTGCAAAACAATGATGTCACACTGCCAAAGCAAAGACTCACAGAGGCATTTCTGTAATATGTAAAATgacaacagcaataataatagcgTTAAAACTGAATGCTGTGCTGTGTATAGTTTGATTAGAAACTGACTTCAGTGCTGTAGAAGAGTTTGCTCTGTgggacagatttttttttacctctgtTAGATCCACATAATTGCTTTATATTATAAACCTTAATGTTTGAAGTGTGTATATGTGACTTAAATCATTTCCAGGGGTGTAACCAGACCCAGACAgaatttttcagattttctgtaGATAAAAGACTGGTATTTTGCCGtatggattttaaaaatctgaattcaAGCATGATCAAATtagccaaaatatttattaaatggaaGTGTTTTGGGATGAATAGATCTTGGAACAGAAATAAGCAGAAATCTTTCTGTGTGGGCCTGGACATAACTCTGCATATTGTTTAACATTTAGTACCTTATTATGAACATAATGAACTTTTTGTTGCCTTTAAGAGCGGTGCTATTAATTGAGCCACTGACTTGCACCAAATGCCAAATTCAATGTGatttgcaaatgtgttttttgtgttaaaatagatgtaaaatgaaatagttttggtttgttttcagaCTAAATCATTAAAGATCTTTCTGCGATATA

Function

symbol description
cdkl1 Enables protein kinase activity. Acts upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including hypochord; nervous system; pleuroperitoneal region; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CDKL1 (cyclin dependent kinase like 1).

NR:

description
cyclin-dependent kinase-like 1 isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256283.1 True 3541 mRNA 0.42 10 14236100 14243270
XM_043256284.1 False 3476 mRNA 0.42 10 14236100 14243270

Neighbor

gene id symbol gene type direction distance location
l2hgdh l2hgdh,LOC107682613,LOC107736610,LOC107705441,LOC107654945 coding downstream 3778 14227198 ~ 14232322 (-)
sos2 LOC107654947,LOC107602966,LOC107736529,LOC107683816,LOC107553213 coding downstream 11974 14209375 ~ 14224126 (-)
cdkn3 cdkn3 coding downstream 35321 14192514 ~ 14200779 (-)
lgals3a lgals3a,LOC107736502,LOC107683071,LOC107705436,LOC107602963,LOC107553209,LOC107654953 coding downstream 51607 14178150 ~ 14184493 (-)
LOC122356234 synj2bp,LOC107705435,LOC107654920,LOC107736856,LOC107553210,LOC107580248 coding downstream 59226 14172637 ~ 14176874 (-)
map4k5 map4k5,LOC107602968,LOC107705444,LOC107736580 coding upstream 132 14243402 ~ 14267479 (-)
sav1 sav1,LOC107705447,LOC107654943,LOC107736858,LOC107602931,LOC107682971,LOC107553191 coding upstream 34126 14277396 ~ 14285372 (-)
nin LOC107602976,LOC107654941,LOC107705448,LOC107736676 coding upstream 42499 14285769 ~ 14305538 (-)
pygl pygl,LOC107736703,LOC107683467,LOC107602977,LOC107553219,LOC106611459 coding upstream 63760 14307030 ~ 14314868 (-)
trim9 trim9,LOC107553220,LOC107654940,LOC107683494 coding upstream 71960 14315230 ~ 14333812 (-)
G93905 NA non-coding downstream 46196 14187539 ~ 14189904 (-)
G93879 NA non-coding downstream 305806 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 547474 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 569840 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 572189 13661750 ~ 13663911 (-)
G94003 NA non-coding upstream 629162 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 737726 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 1036137 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 1361417 15604687 ~ 15605713 (-)
G94145 NA non-coding upstream 1397005 15640275 ~ 15640633 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 71686 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 153310 14079532 ~ 14082790 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 324263 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 331398 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 517786 13693026 ~ 13718314 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 781562 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 984062 15227332 ~ 15253357 (-)
G94128 NA other upstream 1321347 15564617 ~ 15583917 (-)
G94147 NA other upstream 1398761 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 1443000 15686270 ~ 15720816 (-)

Expression


Co-expression Network