slc66a3 (pqlc3,LOC107706924,LOC107681540,LOC107675554,LOC107757120)


Basic Information

Item Value
gene id slc66a3
gene name pqlc3,LOC107706924,LOC107681540,LOC107675554,LOC107757120
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12180247 ~ 12183265 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256341.1
GCAATGAGCTACGGGCGCTGCGGAGGGTCAAATCTCGCGCGGCGCGCTGATGTGTGCGGAAGTGCCGCTGATTCCGATGCTAACATCTGGAGCCGTTTTCTTGCCAAGATCCCACGAGCGGATCACAGAGAGGGATCAACAGAGATGGAGGGCAATTTGACGCTGCATTTGGCGAATTTCAGCACTCTGTTCGTGTGCATGGTGCTGAAGTTCCCGCAGATCTTCGTGCTGATGCGAGCCAGAGCCACTTCTGGAGTCAGTCTGAACAGTCTGCTGCTCGAGCTGCTCGGGTTTATAGTGTTCATGTCCTACCAGATGTATTATGACTACCCACCGCTCACATACCTGGAGTATCCCATCCTCATTGCACAAGATGTCATTGTGCTCCTGTTAATCCTGCACTACAACAGGAACATGAAACACAGCCTCATATACGCAGCACTGTTCGTGGGTGGATGGCAGCTGCTTACGGTACAGAAGTGGGTGATTGATCTGGCCATGAGTTTGTGCACTTTCATTAGTGCTGGCAGCAAACTGGCACAGCTTCAGTGTCTGTGGCGCTCAAAGGACTCCGGGCAGGTCAGCGCTCTCACCTGGGCTCTGGCCACATATACGTGCCTGGCACGGATCTTCACCACCGTCATCACCACCGGAGACACGCAAGTTCTCATACGGTTTGTGGTCATGAGCGTTCTGAACATGTGGGTCACAGTCACTGTCGTCTACTACAAACCTCGTGCAGTGAAACAGGATTAAGAGGATGCAGCTTTCTGCATACGGTTTATCTCATTGTTTGCTGTTggagttttgttttctttgtagaACTAAACTAGATTTAGGTCAGGTGCTATTTGAGAGTAGCGCTTTCTATATtgcaattaaaaccaaaaatcgTATCATAATGCTCCGGTTTTCCCAGTTGACGTATATTAGACCATTTTTAGCTAGTTTTACACTATTTATGGTCAGCTTAAAGTTTTCCACACGTTTATTTAGCTTCTTTGCAAGCACTGGTATTTTCTTCAGAACATGCAGATCTCTTATGTATTAGAATGTGTGTCCGTGGGATTAAATCTCATTTTCCCATGAAGTAAAACGGATACGAATGTTGTAGACTCACAAATGATGAATTGCATTTGATATAAGTACATATCAGAAATCGGACCAAATATGTGATGCGTTATAAAGCAGTAAAAACATTCCTATCCTTCACTGATTCCAACACTTTCTTATAATTCCTGGTAGTTTTCTCGCCTGTAACTCTCTGCATTTGTACATGTTCAGATATACTGTTTTTAAAGTTGTTATActgtaacaaatatttttttgagcaattttcAAGCTGAAGAGctgttaaaattgtttaatatcaGGTTGCTGAACAGGCCGTTTACTGTAGTTCACGAAGGGGTGATGTTTACAATACGCTGAAATATGCACTATTTTTATACTAAGCTTCATCTATATTGATCTGTATTATACATAATGAACACGTGGTTATCATTAATGCAAAACTAATCAACTATAGGACTCTGAAGTGTTCTAGTACAAGATTAtaacttgaaaataaatgatttcaatGACTATTAGGTCTAAAGCACAACTGAATGTTTTTGTGAGTACTTAATAGAGGTTcctttgtattttataaatcaataaacattcCTTTTGTGTGACAATGTG

Function

symbol description
pqlc3 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; lower jaw molar; olfactory epithelium; and upper jaw molar. Orthologous to human SLC66A3 (solute carrier family 66 member 3).

NR:

description
PQ loop repeat-containing protein 3 precursor

GO: NA

KEGG:

id description
K23680 PQLC3, SLC66A3; solute carrier family 66, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256341.1 True 1683 mRNA 0.42 7 12180247 12183265

Neighbor

gene id symbol gene type direction distance location
sobpa sobpa,LOC107706905,LOC107681548,LOC107757118,LOC107585480,LOC107588585,LOC107675556 coding upstream 7904 12144638 ~ 12172343 (+)
mtres1 LOC107706999,LOC107757125,LOC107588589,LOC107681546,LOC107675559,LOC107585479 coding upstream 75581 12101973 ~ 12104666 (+)
rdh14a rdh14a,rdh14,LOC107757127,LOC107675576,LOC107585474,LOC107668816 coding upstream 148351 12029451 ~ 12031896 (+)
LOC122357022 nt5c1ba,LOC107668815,LOC107707024,LOC107588591,LOC107585516 coding upstream 151088 12024402 ~ 12029159 (+)
LOC122357024 NA coding upstream 155956 12022560 ~ 12024291 (+)
arg2 arg2,LOC107675544 coding downstream 95291 12278556 ~ 12285045 (+)
rdh12 rdh12,rdh11,LOC107705384,LOC107585486,LOC107588583,LOC107724212,LOC107675518,LOC108439707 coding downstream 110940 12294205 ~ 12298725 (+)
si:ch211-10a23.2 si:ch211-10a23.2,LOC107654931,LOC107724523,LOC107675536,LOC107588580,LOC107585488 coding downstream 140779 12324044 ~ 12327519 (+)
ndufaf1 ndufaf1,LOC107655011,LOC107705394,LOC107588570 coding downstream 208494 12391759 ~ 12395946 (+)
oip5 oip5,LOC107655012,LOC107705396,LOC107588571 coding downstream 216399 12399664 ~ 12401608 (+)
G93182 NA non-coding upstream 1781 12121939 ~ 12178466 (+)
G93169 LOC107588588,LOC107706947,LOC107681544,LOC107757121 non-coding upstream 72763 12104733 ~ 12107484 (+)
G93167 NA non-coding upstream 79892 12099606 ~ 12100355 (+)
G93166 LOC107681535,LOC107706968,LOC107588687,LOC107675558 non-coding upstream 81021 12098694 ~ 12099226 (+)
G93153 kcns3a,LOC107681537,LOC107588718,LOC107757122,LOC107708176,LOC107585531,LOC107675527 non-coding upstream 100345 12077637 ~ 12079902 (+)
G93190 rock2,LOC107588686,LOC107681539,LOC107707968 non-coding downstream 2803 12186068 ~ 12189038 (+)
G93200 NA non-coding downstream 19477 12202742 ~ 12267066 (+)
G93222 NA non-coding downstream 179800 12363065 ~ 12374131 (+)
G93219 NA non-coding downstream 196444 12379709 ~ 12380851 (+)
G93267 NA non-coding downstream 202042 12385307 ~ 12385618 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other upstream 575395 11603697 ~ 11604852 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other upstream 587647 11571660 ~ 11592600 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other upstream 766732 11389385 ~ 11413515 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other upstream 917627 11255594 ~ 11262620 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 962072 11213526 ~ 11218175 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 248654 12431919 ~ 12436643 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 319120 12502385 ~ 12535071 (+)
G93296 rrbp1 other downstream 388366 12571631 ~ 12575212 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other downstream 403621 12586886 ~ 12588998 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other downstream 951208 13134473 ~ 13158440 (+)

Expression


Co-expression Network