LOC122356226


Basic Information

Item Value
gene id LOC122356226
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3246263 ~ 3247132 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252296.1
ACCCTTAGTATGTGTAAAAGTTTTGCTATCTTGTCAAAAGCACCTGGTGTTGAGCTACTTGTTTCCTTATTCTGTTTCCAGCAGAAACCATTCCTTTTTCCCCAAAgGAGCCAGAAAGATCCAGGCTCAGAGAAGAGAAATGGTGTGGAGTTCATGCTTCAAGGACATATGCGTTCACAACTGTGGCCAGAAAATGTCAGGCTTGGCCTCCATAGTTTTTATTACACTGTACTCTGTATTGATGACTTTtctttccagttttttttttttaaggaactaATGTAGTTCACATTGCTACCACGCTACTTTAGCATCTGCAGATAGTTGGTGTAATTGCACATGTTCTGTGCTAGCTCAAATAAATCACAGCAACCCTTTCTGTCTTTGCTTTTTACTCATATGCTTATTACCGCTGGTGTTAGACTTGTGCAGTTCTCTTTTTACGTTTTGCACACATTGGGCCTCGTTCATAAAACAGGAGCAGAATGCGTTTCTGTGTATATCGTCCATAAAACGTTTCTATTATGCCACACTGAGTGAAGCAGTTTGCCTCAAGCTTGGTTTTATGAAcgttatatatgttataaagtTCATTACGTTGGTGTTTTATGAATGAGGCATACCGCACTGTATTTGCATGTGCATCAAATACGAATGTAAGTAACATTACTAGTATTTATTATAAGTATTAAACTAATATGTTGTACCTGCTTACAGTAAACTCTTGAAATGacattaaacttgttttatctGTATTTGCATTA

Function

GO:

id name namespace
GO:1902562 H4 histone acetyltransferase complex cellular_component
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component
GO:0032777 Piccolo NuA4 histone acetyltransferase complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252296.1 True 764 lncRNA 0.37 2 3246263 3247132

Neighbor

gene id symbol gene type direction distance location
znf318 znf318,LOC107739464,LOC107564219,LOC107728066 coding upstream 154 3235043 ~ 3246109 (+)
LOC122356787 LOC107739478,LOC107564218 coding upstream 14840 3229113 ~ 3231423 (+)
LOC122356783 LOC107655626,LOC107728064,LOC107564218,LOC107739478,LOC107706823 coding upstream 18514 3209792 ~ 3227749 (+)
LOC122356067 ppp2r5d,LOC107559765,LOC107696374,LOC106605890 coding upstream 195596 3022616 ~ 3050667 (+)
LOC122356304 LOC107739478,LOC107564218,LOC107728064,LOC107655626,LOC107559768 coding upstream 267014 2971146 ~ 2979249 (+)
tjap1 tjap1,LOC107728071,LOC107559778 coding downstream 73297 3320429 ~ 3398358 (+)
ncoa4 LOC107739471,LOC107669570,LOC107696383,LOC107728073 coding downstream 170402 3417534 ~ 3426736 (+)
LOC122356604 LOC107739472,LOC107565599,LOC107669574 coding downstream 187391 3434523 ~ 3440314 (+)
LOC122356793 LOC107669554,LOC107696371,LOC107578696 coding downstream 466701 3713833 ~ 3717294 (+)
si:ch73-193i2.2 LOC107728794,LOC107590009,LOC107696375,LOC107739482 coding downstream 470164 3717296 ~ 3729468 (+)
G90319 tuba4l,LOC107655627,LOC107559781,LOC107564211,LOC107706828,LOC107669576 non-coding upstream 42244 2857325 ~ 3204019 (+)
G90326 cul9,LOC107736443,LOC107564217,LOC107669557,LOC107683065 non-coding upstream 44776 3199847 ~ 3201487 (+)
LOC122356074 NA non-coding upstream 225372 3020068 ~ 3020891 (+)
G90339 NA non-coding upstream 229043 3016794 ~ 3017220 (+)
LOC122356240 NA non-coding upstream 364577 2865807 ~ 2881686 (+)
G90365 NA non-coding downstream 68531 3315663 ~ 3315908 (+)
G90373 lrrc73,LOC107696385,LOC107728077,LOC107739469 non-coding downstream 154832 3401964 ~ 3403754 (+)
G90378 NA non-coding downstream 203041 3450173 ~ 3450485 (+)
G90381 NA non-coding downstream 222315 3469447 ~ 3489791 (+)
G90388 NA non-coding downstream 254936 3502068 ~ 3543652 (+)
LOC122356782 NA other upstream 36510 3207411 ~ 3209753 (+)
G90324 cul9,LOC107564217,LOC107669557,LOC107559769,LOC107655624,LOC107706827 other upstream 54150 3187826 ~ 3192113 (+)
G90349 NA other upstream 66330 3179427 ~ 3179933 (+)
LOC122356072 znf318,LOC107739464,LOC107564219,LOC107728066 other upstream 235622 2982559 ~ 3010641 (+)
G90230 NA other upstream 775882 2469945 ~ 2470381 (+)
G90343 ppp2r5d,LOC107696374,LOC107559765 other downstream 24193 3271325 ~ 3274372 (+)
G90348 dnph1 other downstream 30705 3277837 ~ 3280997 (+)
G90377 NA other downstream 202269 3449401 ~ 3450017 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other downstream 373274 3620406 ~ 3713763 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other downstream 561921 3809053 ~ 3832550 (+)

Expression


Co-expression Network