LOC122356273


Basic Information

Item Value
gene id LOC122356273
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15898871 ~ 15914946 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252301.1
AGGCCCTTAACAAATCACCCAGCCACTTTCCACATCTGCTGCATGTCAGCATCTGCCAGACGCGCTCACCCGTCCCGGACGCTGCTAGCAAGCCTTCATTACGCCTGCTGCTGAACAGcatGTTCAACAGGTGTTAAGTGTCTGGAATGTGTGACTGGAATCGGCAGTAGATCTTGAGGCTGTACTAGTTCACATTCACCAgtggtcagaggtcagagggcCCTTCTGAGCACTAAAACACCTGAGGCACAGCTCCTCTGTCAGAGACGTGGACCAGAGCATGTTTACTCAGGGTCAGCATTGCAGTGAACAACAGAGCAGACAGACATGACACAACGGACCTATGCTGTGCGTGCCGGGACTACTGGAAATAGGCGGTTCTAAAGGATCCGACGAAGCGACCCAGTCTACTGGGAAGACATTTGTGTTTAACCAGGGTTAACCTGAGATAAGAAAGAAGCACCCGCGCAGACCTTCTGGATATCATCAGAGAAGCTTTTTGTTGGACTCCTGAGGAACAGGTCAAGAAGAAAGGGACATATGTGAGACGTTGAAAGAACCAGTAAATTCCAACAGATGTGGGCAGTCTGTGAGAGGAAATCCGACGGTCTGACACAGCAGAAGATCATTTGGCTTTGTCCCTGCATGTTAGGGGCAATGACAGCACTGAGAGTAAATGAATGAGTCAGACACCGAGTTAAAGCTCTGGTTGTTCACCCttaataaactgtaaatatttctctaaaaggaaaaaaagaacgGGGAACAACTTCGGTGCTAAAGGTTTCCTAAACAGTCCTTTCAAATTGAAGCGCATGAAAATGAAGACATTGCAGTTTTAAGAGAAAGATTAGATAATCAGCCCATTTAAATAGTCCATTGGACGGCGTCCAATCACTCCCTATTTTCCACAAAGAATGAGGTCTAATAAGATGCCTCTGCAAGACACCTGAGTAAGTGGAAATAATCCCCCTTTGAGAGCAGCGTGTAAAAACACTCctctaaaaatataacatgcCTAACCTGAGGGGAGACAACAGcgtgagaaacagagagaataaGTGAAAAGCCGACGCACACGCATACACAGAGATGAAAGCAGAAGTCAGTACAGTTTACATCAACCTGAATCTCCTCATTTAGAGAATGTGAGCACAGGCCGCGTGAAGTGACAGTCGATAAAATATaagcagacagagagacagtAATTAGCGTGAGTGATTCTCTAACACAGGCTTTGAGCCGACTGCTACGTTGTGACATTTCTCAAGCCTTGTTTTGTAAAGATGCATCTGGAAGCTGCTGAGAAGGACGTCCCCACCTCTGTGCTCGGAAAATTGACTCCTCCATttagaaacagaaatgtttgcatAATAAATCAGCGCAGGAAGCTTAAGATGTGGCTTAAACTACTTTTACATTCTCTGGAGAGGGTAGTGCTTTCTTGTCCTCGATGCTGGAGTGTTTGCTAATCCATTGCCAAGGTGCTCTGCGCAACTATATTTACTAACAGCTGCGACTTACAAATTGTCCTTTGCATATAGGGATAGATTGGTCTGTACGGACAGATAACAGAAGTCAATCTGCTTTTATAGCCTTTAGTCAAGCCTGTAACCACAGCAACTGATAGAAATAGTAAATATAAGGCCTTTAAGGTCTTTAgggatttaatttttattctcaGCTATTTTGGGTAACTCCTGCTGCTTTCATCCTCCTGAGTATTCATCCAAAAACTCTCCAGTTTGGTTTGTTCTATCATTTAACAGGAATTGAATTGTGTCTTGTTCTTCATTGGAGTCTGCATAATACCCtcttttggttgttttttgaCAACCCAAGAGAATTTTTTAACAGCATAGAATAACTTTTGGTgccatttatatgtaaataatgtgaCAGGCAACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252301.1 True 1910 lncRNA 0.44 3 15898871 15914946

Neighbor

gene id symbol gene type direction distance location
ankrd2 LOC107586109,LOC107747258 coding upstream 10769 15877514 ~ 15888102 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding upstream 37409 15797433 ~ 15861462 (+)
got1 got1,LOC107665595,LOC107601049,LOC107586067,LOC107702745 coding upstream 125326 15764954 ~ 15773545 (+)
slc25a28 slc25a28,LOC107601050,LOC107747263,LOC107719215,LOC107665596 coding upstream 175128 15714193 ~ 15723743 (+)
golga7bb golga7bb,LOC107728443,LOC107702732,LOC107665585,LOC103368019,LOC108247940 coding upstream 290990 15581868 ~ 15607881 (+)
prkg1a prkg1a,prkg1b,LOC107747254,LOC107665604,LOC107702750,LOC108263833,LOC108443637,LOC107586071,LOC103355670 coding downstream 1886 15916832 ~ 15966825 (+)
dkk1a LOC107601033,LOC107665569,LOC107747256,LOC107719231,LOC107702737,LOC107586111 coding downstream 53809 15968755 ~ 15971312 (+)
polr1b polr1b coding downstream 377815 16292761 ~ 16302095 (+)
LOC122356348 LOC107747251,LOC107549156,LOC107665613,LOC107676394,LOC107719205,LOC107586077 coding downstream 412911 16327857 ~ 16332665 (+)
cdc42ep3 cdc42ep3,LOC107549143,LOC107665567,LOC107676396,LOC107747292,LOC107719229,LOC107586113 coding downstream 466412 16381358 ~ 16390115 (+)
G94176 NA non-coding upstream 110641 15774767 ~ 15788230 (+)
G94175 NA non-coding upstream 124476 15773969 ~ 15774395 (+)
G94174 NA non-coding upstream 134297 15764340 ~ 15764574 (+)
G94173 NA non-coding upstream 136904 15761692 ~ 15761967 (+)
G94163 NA non-coding upstream 188717 15707116 ~ 15710154 (+)
LOC122356350 NA non-coding downstream 446726 16361672 ~ 16381076 (+)
G94361 NA non-coding downstream 626239 16541185 ~ 16542938 (+)
G94365 NA non-coding downstream 642890 16557836 ~ 16558137 (+)
G94397 NA non-coding downstream 826521 16741467 ~ 16796842 (+)
G94481 NA non-coding downstream 971138 16886084 ~ 16925137 (+)
G94186 st3gal7,LOC107665608,LOC107601047,LOC107747259 other upstream 21449 15873444 ~ 15877422 (+)
hps1 hps1,LOC107747297,LOC107665607,LOC107719211,LOC107702747,LOC107586068 other upstream 27055 15864839 ~ 15871816 (+)
LOC122356934 LOC107747267,LOC107665602,LOC107601027 other upstream 580694 15314814 ~ 15318177 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other upstream 584215 15295849 ~ 15314656 (+)
fam135a LOC107747270,LOC107665594,LOC107736843,LOC107664195,LOC107564672 other upstream 623637 15255074 ~ 15275234 (+)
G94324 NA other downstream 600881 16515827 ~ 16518826 (+)
G94378 capn1a,LOC107549131,LOC107676389,LOC107586085,LOC107679188,LOC107734280 other downstream 682835 16597781 ~ 16605383 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other downstream 1645350 17560296 ~ 17575938 (+)
G94760 NA other downstream 2524227 18439173 ~ 18439583 (+)
G94789 LOC107563058 other downstream 2621946 18536892 ~ 18537443 (+)

Expression


Co-expression Network