LOC122356419


Basic Information

Item Value
gene id LOC122356419
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13622766 ~ 13650733 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252321.1
CTTGGCACCGGCGAGGATAGAAAGAACGTTACTATGGCGAAGGACTAATCCATGAAGAATAATTGTGCCATTCCGAAATTACTCGGATACTGAACTTTCACCCTGGTCTAATGGAAACCGCTTTATGTTTTCACATTCACATGTGATTCTTCAGAACACTAAAGAAACACCCTCGGCGGTCCGACTTTTAGTGTTTTGGGCAGCTCTCTGAACCCTGCAAGCAGACAAGCAAATATTTCTGAAGCAATCAAGGGTTTTTGCTGCAAAACCAAATGTGCAGAATTGCTCTGAACAGTTGTGGATCATCCCGATCCCTTGGCCACAAACATCTGAACGCCCTCCAGCCGCAGATGCTCATAGAAAGGCTCATCCAGGATCACGCTGTCAATGAGGCTACAGCCTATGTACAGTGACGGAGTCTCAGGGAGGAGGAACATCGAGAGAAACGTGCTCGCGCAAGATGCGACAGACGCGTTAGAGACTCAACTGTGCAACCACTCACTGTCAAATACAAAAAACCAAACCATGCCTGAAGACAGACAACGCTGAAGAAagttactgtatttatgaaGAACAAtggcattataaaataaatctgagcTGGAACTTTCTGActctgtttaaaacaaaaaggagtCAAAGAGAGAAAGTTAGCAAGAccgagagagtgagagaataGGAGGAGCTCTGGCCCTGGGTCCCTGGGCACAGAAGGTGCTGCAATGCTGCTTTACTAACAGTCTGAATGGGAAGCACCTCTCAgcttcatttccttttttatccCACCCTCTGCCCCCCACTAAAAAAATATCCAGTCTACAACACAAATGCAAGACAGACATGCTCTTCTGTCTCTCATTCTCAGACTTTGAAGCTCCAGTGCAAAAATCCCCTCTACTTCCTGTCCTATTTAGTTTAAATCGTGGTATTCATGTCAGATGCATACCAGCATTCAGCTCCACTCCTTCAGTGTCAAAGTGTTCAGGTCCACGATCAATTCCGCTTCTTTCTCATTTTTAGTTTAAGAATAAATGGCTCTTAAATGTTCTTCTGTCTATGTCTATGCAAgtctataaaatgtatgtaaacatatatatgtcattatttactatttatacattttttattaccacacacaacacacacaaattatttcTTCAGACGTTTTTTGGTGCAGTTGAGGTGCTATATAGCACTGTTACCGTGTAAAGAACCTGTTA
>XR_006252322.1
CTTGGCACCGGCGAGGATAGAAAGAACGTTACTATGGCGAAGGACTAATCCATGAAGAATAATTGTGCCATTCCGAAATTACTCGGATACTGAACTTTCACCCTGGTCTAATGGAAACCGCTTTATGTTTTCACATTCACATGTGATTCTTCAGAACACTAAAGAAACACCCTCGGCGGTCCGACTTTTAGTGTTTTGGGCAGCTCTCTGAACCCTGCAAGCAGACAAGCAAATATTTCTGAAGATCCCTTGGCCACAAACATCTGAACGCCCTCCAGCCGCAGATGCTCATAGAAAGGCTCATCCAGGATCACGCTGTCAATGAGGCTACAGCCTATGTACAGTGACGGAGTCTCAGGGAGGAGGAACATCGAGAGAAACGTGCTCGCGCAAGATGCGACAGACGCGTTAGAGACTCAACTGTGCAACCACTCACTGTCAAATACAAAAAACCAAACCATGCCTGAAGACAGACAACGCTGAAGAAagttactgtatttatgaaGAACAAtggcattataaaataaatctgagcTGGAACTTTCTGActctgtttaaaacaaaaaggagtCAAAGAGAGAAAGTTAGCAAGAccgagagagtgagagaataGGAGGAGCTCTGGCCCTGGGTCCCTGGGCACAGAAGGTGCTGCAATGCTGCTTTACTAACAGTCTGAATGGGAAGCACCTCTCAgcttcatttccttttttatccCACCCTCTGCCCCCCACTAAAAAAATATCCAGTCTACAACACAAATGCAAGACAGACATGCTCTTCTGTCTCTCATTCTCAGACTTTGAAGCTCCAGTGCAAAAATCCCCTCTACTTCCTGTCCTATTTAGTTTAAATCGTGGTATTCATGTCAGATGCATACCAGCATTCAGCTCCACTCCTTCAGTGTCAAAGTGTTCAGGTCCACGATCAATTCCGCTTCTTTCTCATTTTTAGTTTAAGAATAAATGGCTCTTAAATGTTCTTCTGTCTATGTCTATGCAAgtctataaaatgtatgtaaacatatatatgtcattatttactatttatacattttttattaccacacacaacacacacaaattatttcTTCAGACGTTTTTTGGTGCAGTTGAGGTGCTATATAGCACTGTTACCGTGTAAAGAACCTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252321.1 True 1220 lncRNA 0.42 6 13622766 13650733
XR_006252322.1 False 1154 lncRNA 0.42 5 13622766 13650733

Neighbor

gene id symbol gene type direction distance location
memo1 memo1,LOC107654980,LOC107705412 coding downstream 42670 13570790 ~ 13580096 (-)
LOC122356824 LOC107705409,LOC107600568,LOC107654911,LOC107683712 coding downstream 217223 13390572 ~ 13405543 (-)
btbd3b btbd3b,LOC107654989,LOC107705408,LOC107585513,LOC107739865,LOC107679136,LOC107600567 coding downstream 338144 13275699 ~ 13284622 (-)
sptlc3 sptlc3,LOC107654988,LOC107600566,LOC107662809,LOC107739864,LOC107705357 coding downstream 418534 13181337 ~ 13204232 (-)
ism1 ism1,LOC107654990,LOC107739863,LOC107705406,LOC107662810 coding downstream 443313 13166439 ~ 13179453 (-)
erlec1 erlec1,LOC107654972,LOC107679899 coding upstream 28554 13679287 ~ 13684104 (-)
LOC122356826 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 coding upstream 77009 13727742 ~ 13735822 (-)
LOC122356402 mycla,LOC107680680,LOC107739875,LOC107553198,LOC107576479,LOC107654967 coding upstream 88916 13739649 ~ 13743024 (-)
LOC122356831 erlec1,LOC107654972,LOC107679899 coding upstream 196108 13846841 ~ 13852454 (-)
LOC122356415 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 coding upstream 208097 13858830 ~ 13884172 (-)
G93513 NA non-coding downstream 274881 13347401 ~ 13347885 (-)
LOC122356420 NA non-coding downstream 349625 13271278 ~ 13273141 (-)
LOC122356418 NA non-coding downstream 398230 13208410 ~ 13224536 (-)
G93472 NA non-coding downstream 460039 13162489 ~ 13162727 (-)
G93471 NA non-coding downstream 460396 13162145 ~ 13162370 (-)
G93583 NA non-coding upstream 3646 13654379 ~ 13655349 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding upstream 11017 13661750 ~ 13663911 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding upstream 15076 13665809 ~ 13666260 (-)
G93855 NA non-coding upstream 35214 13685947 ~ 13688626 (-)
G93879 NA non-coding upstream 110313 13761046 ~ 13930294 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other downstream 54741 13564422 ~ 13568025 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other downstream 63932 13520413 ~ 13558834 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other downstream 297715 13309952 ~ 13325051 (-)
LOC122356414 NA other downstream 1025464 12557077 ~ 12597302 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other downstream 1191988 12429197 ~ 12430778 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other upstream 42293 13693026 ~ 13718314 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 247525 13898258 ~ 13904702 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other upstream 259606 13910339 ~ 13911837 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other upstream 428799 14079532 ~ 14082790 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other upstream 509590 14160323 ~ 14164414 (-)

Expression


Co-expression Network