LOC122356489


Basic Information

Item Value
gene id LOC122356489
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1861471 ~ 1862276 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252327.1
ACGGGTCTCTGTGATCACAGCACCGCTAACCAGGAGAGATCACCCGGGGAGATTAAGATTATCAAAAGGACAGCGatacaaacaaatcaaacagaCGGGAAGCGGTTCATATCATGTGTTTCTCGATAATGGAAACGTAATCGCAAAGTTTTCCATTTTCAAATAGATCTTTTTTTCGTCGTCAGaaacaAGCTCTGTGATAAAATCAAAAGCcagaggaaacaaaaccccatccatacagaagggagaaaaaaaaccttggggtcagttctcctctgaccggacgcccagttttaaacacagctgtgtcagacagtgtaaatgacttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgaatgaataaaggttaaataaatatgcatacattgCAAAGGCTTTGAACACTTATGCATATGCTGGCATACTGTATAGTTTGTTACAgttattaacaattattattattattattatatgtacactgaagtcactgaatgtctttttatttgataaaaaatatcgAAATTAGATGATGCTTTtccaaaagatttatttttgactaCATGATCTtgaagagaaacacaaaacctTCACATTCAACATCCCAGTCGGACTAGACATGTTGTcctattttgaaaaaaaacttgCTAAAACTGTGtggtatattaaaaataaatgtgcttttattttaatata

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252327.1 True 703 lncRNA 0.35 2 1861471 1862276

Neighbor

gene id symbol gene type direction distance location
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding upstream 43379 1815818 ~ 1818092 (+)
LOC122356760 pim3,LOC107732271 coding upstream 91245 1768733 ~ 1770226 (+)
prorsd1 LOC107701441,LOC107571560 coding upstream 176292 1683250 ~ 1685179 (+)
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 483518 1357268 ~ 1377953 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding upstream 533686 1299234 ~ 1327785 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 177206 2039482 ~ 2046270 (+)
degs1 degs1,LOC107753721,LOC107699139,LOC107742811,LOC108412154 coding downstream 192713 2054989 ~ 2059566 (+)
wu:fc17b08 LOC107705013,LOC107565911,LOC107699137,LOC107742810,LOC107753730,LOC107753729 coding downstream 213897 2076173 ~ 2094028 (+)
LOC122356476 LOC107582116,LOC107753727,LOC107699114,LOC101886535,LOC107558210,LOC107709369 coding downstream 304344 2166620 ~ 2175433 (+)
LOC122356458 NA coding downstream 323982 2186258 ~ 2195187 (+)
G89997 NA non-coding upstream 21812 1837979 ~ 1839659 (+)
G89957 NA non-coding upstream 133320 1701578 ~ 1728151 (+)
G89981 ccdc88a,LOC107570323 non-coding upstream 145587 1711945 ~ 1715884 (+)
G89974 NA non-coding upstream 168350 1692435 ~ 1693121 (+)
G89973 ccdc88a,LOC107570323,LOC107695193 non-coding upstream 169060 1690146 ~ 1692411 (+)
G90006 NA non-coding downstream 3871 1866147 ~ 1869613 (+)
G90009 NA non-coding downstream 9414 1871690 ~ 1871892 (+)
G90011 NA non-coding downstream 10939 1873215 ~ 1873444 (+)
G90013 NA non-coding downstream 12425 1874701 ~ 1877196 (+)
G90015 LOC107709440,LOC107565916,LOC107680287 non-coding downstream 39340 1901616 ~ 1901893 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other upstream 19363 1840335 ~ 1842108 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other upstream 248141 1581358 ~ 1613330 (+)
G89846 NA other upstream 391336 1469405 ~ 1470135 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 515608 1342096 ~ 1345863 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 721276 1139159 ~ 1140195 (+)
G90010 LOC107676803 other downstream 9908 1872184 ~ 1872591 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other downstream 127596 1989872 ~ 1997310 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 291146 2153422 ~ 2166028 (+)
cutc cutc other downstream 313733 2176009 ~ 2180829 (+)
LOC122356772 pim3,LOC107732271 other downstream 402470 2264746 ~ 2284807 (+)

Expression


Co-expression Network