LOC122356492


Basic Information

Item Value
gene id LOC122356492
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2052031 ~ 2054891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252336.1
GAGCTTCATCCAGAGCTCATCCAGAGCTTCATCCAGAGCTTCACCCAGAGCTTCATCCAGAGCTTCATCCAGAGCTTCACCGCTGACTTTCTTTCACAGCCTTTCAGCTGCAGGAAATAGACGAAAGCATGGAGTCTCTCTTGGCTGTTGTGACCAGTGGGCTCCTGGCTGTGGATGAACATTCATTCCTGCAAACCACGGAGTGGTGTCTGGTACATGCTGCGGAGATGAGGAATAGGAGTTTTGGATTGTATTTGGGGAAAACAGGGAATTAACCCGAGATACTGTAGTAACAACAGTTCCCAAACCCTGAACTCATTCTTCCACCTTCTCTCATCGTCAGTCCAACTCAAAGGACCTCAACTGATGAATCACCACAGTCATATCAAGCACAAAATGGGTTAATATGTACTTTTCTTCAAGACCATGTTGcgtgattcatttaaacaatctcatctgaaagggaaactcctacaaatgcCTATGCAATAAAATCAGAGGCCAAAA
>XR_006252337.1
GAGCTTCATCCAGAGCTCATCCAGAGCTTCATCCAGAGCTTCACCCAGAGCTTCATCCAGAGCTTCATCCAGAGCTTCACCGCTGACTTTCTTTCACAGCCTTTCAGCTGCAGGAAATAGACGAAAGCATGGAGTCTCTCTTGGCTGTTGTGACCAGTGGGCTCCTGGCTGTGGATGAACATTCATTCCTGCAAACCACGGAGTGGTGTCTGGTACATGCTGCGGAGATGAGGAATAGGAGTTTTGGATTGTATTTGGGGAAAACAGGGAATTAACCCGAGATACTGTAGTAACAACAGTAAGTGTAAGATTAAGTTCCCAAACCCTGAACTCATTCTTCCACCTTCTCTCATCGTCAGTCCAACTCAAAGGACCTCAACTGATGAATCACCACAGTCATATCAAGCACAAAATGGGTTAATATGTACTTTTCTTCAAGACCATGTTGcgtgattcatttaaacaatctcatctgaaagggaaactcctacaaatgcCTATGCAATAAAATCAGAGGCCAAAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0098687 chromosomal region cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005694 chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252336.1 False 507 lncRNA 0.45 3 2052031 2054891
XR_006252337.1 True 523 lncRNA 0.45 3 2052031 2054891

Neighbor

gene id symbol gene type direction distance location
heatr5b heatr5b,LOC102314180 coding downstream 14920 2012695 ~ 2037111 (-)
efemp1 efemp1,LOC107753722,LOC107742815,LOC107701580 coding downstream 40637 1997355 ~ 2011394 (-)
vit LOC107680287,LOC107565916,LOC107709440 coding downstream 131406 1899037 ~ 1920625 (-)
si:ch1073-291c23.2 NA coding downstream 174321 1873619 ~ 1877710 (-)
ddx21 ddx21,LOC107680284,LOC107709417,LOC107693788,LOC107725010,LOC107565900 coding downstream 180754 1864531 ~ 1871277 (-)
nvl nvl,LOC107558213 coding upstream 5409 2060300 ~ 2074778 (-)
slit1a slit1,slit1a,LOC107699140,LOC107753728,LOC107705008,LOC107565895 coding upstream 38584 2093475 ~ 2146596 (-)
LOC122356487 LOC107654083,LOC107715618,LOC107727478 coding upstream 384315 2439206 ~ 2457063 (-)
LOC122356433 LOC107680168,LOC107571251,LOC107567524,LOC107563091,LOC107676802,LOC107653882,LOC107756192,LOC107560357,LOC107717306 coding upstream 403989 2458880 ~ 2466266 (-)
gsta.1 LOC107701971,LOC107734005 coding upstream 423692 2478583 ~ 2480329 (-)
G90078 NA non-coding downstream 144493 1907316 ~ 1907538 (-)
G90076 NA non-coding downstream 164422 1887406 ~ 1887609 (-)
G90074 NA non-coding downstream 180299 1871381 ~ 1871732 (-)
G90064 NA non-coding downstream 272502 1778464 ~ 1779529 (-)
LOC122356490 NA non-coding downstream 276104 1770312 ~ 1775927 (-)
G90166 NA non-coding upstream 95426 2150317 ~ 2166300 (-)
G90168 NA non-coding upstream 97696 2152587 ~ 2155188 (-)
G90180 NA non-coding upstream 136020 2190911 ~ 2192963 (-)
G90193 NA non-coding upstream 159646 2214537 ~ 2215301 (-)
G90196 NA non-coding upstream 162999 2217890 ~ 2218434 (-)
LOC122356758 ccdc88a,LOC107571560,LOC107701441,LOC107570323,LOC107695193 other downstream 359677 1684449 ~ 1692354 (-)
LOC122356439 LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986,LOC107708380 other downstream 494984 1554230 ~ 1557047 (-)
si:dkey-228d14.5 si:dkey-228d14.5,LOC107747455,LOC107582513,LOC107708394,LOC107589525,LOC107678589,LOC107690177 other downstream 763749 1212870 ~ 1288282 (-)
lrmda c13h10orf11,cunh10orf11,c3h10orf11,cssa18h10orf11,LOC107747465,LOC107678567,LOC107708444,LOC105909757,LOC103041229,LOC107582503 other downstream 1121026 687409 ~ 931005 (-)
LOC122356753 LOC107708390,LOC107678530,LOC107589588,LOC107698143 other downstream 1812672 223958 ~ 239359 (-)
G90161 tp53bp2,LOC107582030,LOC107705014,LOC107742808 other upstream 96946 2151837 ~ 2245078 (-)
G90304 NA other upstream 529305 2584196 ~ 2585331 (-)
G90311 polh other upstream 571437 2626328 ~ 2627157 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other upstream 935527 2990418 ~ 3244896 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other upstream 1226446 3281337 ~ 3298549 (-)

Expression


Co-expression Network