LOC122356496


Basic Information

Item Value
gene id LOC122356496
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2010196 ~ 2012985 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252341.1
atttaaaaaaataaggccAGGTTGTAAAGTCAACGTCCAGCAGTATATACTTTAGCAAGATTCTGGAACACTCCCTTCACAGCATTTCCTCAGTTTCTGTGTCTGTACTCTGAGCTGCGGGGAAGGAGCGGATGTCAACAAGTCTACAATGAAGGTGACTGATTTCCCATTTGGATTTGATGTAATAAAGAAACCTGCAATTAAGGTTTTGTGATGCATGATGCAAAGCACAAGCAATGTTTTTACTAACAGCCTCATCCTGTGTTTGCTCAACTAGGTTTTGGGTTACATTCTGGAAAAAAACCTTATAATATAAAACCCCTTTACTGTTGAAAAAGGgttatataattacatgcatttgAATGTATTCATCACATACATACACCTGTAATATCcaagcaaaaaatataaaaagtttaacTCCAAAAAGAACTAGTTTTAAACCCTAAGAGCagcccaaaaaaaaacaggcaaccaaatccaaaaaaatgtagcttaatcaaacaaacacaagaacGGGCCATAATCAAACATACAATACCTGGAAACACAGGAAACGCAGCTCAGCTAATGAGACTTATCAGCGAGGGAATGAACGGCCTGCTCATTTGGACATGCAAACAGGACATGAAGCACAGGTGATGGAAATGAGAGCGTGAGAACAAACACTGACTCCTGACACTGAAAACTATTTACTGCGTTCTCCTCTCTCCCCCTCCACCGCTGCCTCCAAAATGGGTCaatctgaaaatgcagctttcacTCTGTATGAAAACAGCGGTATTCTGAAATGATGACGCATATTACACAACTTCAGGATAAGCCTCAAAGAACCAAACAACAAGACTTGAAGAATAAGGCTTTTCTCTTCTTCCAAGGAAAACTGCACTGCTCCATAGTAGACCCCTAGCAATGGGACATCATTCCCAGAATGCAGTCAGAGCAACGCACTGCAGCAAGCCGTCAACACAGCAGAATGACCTCCCTCCTGAACTTACCCATGTTATCCAAGctgtcttgtgtttttctttctttagttGCAAAGAAATGACCTTTTTTGAGGAAAAATTCCAGGATTTTTCACCGTTTAGTGACTTCTATGGTGGCCAATGCCTACTTGGATGATTCACTCAGAGGCATTGAAAGATCATCTTGAGCGTCTGCGGAGGGTGCTTTTGGAGCTCCAGAGGGCTGCTCTCACTGACAACCCCCTCAAATGCCATCTTGCCATGTCGGAAGGGGCCTCATCTGGTCCCAAAAGAAGGTGGAAGCGGTGTAGAAGGCTTAGATACCTCACAAAAACCCAGGTACAGgctttcttggggttggcgggTTACTATCGCTTCTTTAGGCCCAACTTCTCATCGTTAGCTGCCTCCCTGAAAGATCTGACCAGGAAGGGGTAGCCAGAGAAGATCGGTGGatgacgagcgtcccgagggATCATCAGCATCGCCCTGGTAGTTCACGAGGAGCACCTGGCTGCCGTACCCATCAGAAGCTGATTGGTCACAGATGCTGCTCCTCATCAAGAACCCTACAAAAGCCCAGAAGACACACCGGTGAATGAGCAATGCCTCCACTACTGACTGCAGCTAATGTTTTCTGTCTTGTTTCCAGcagacagcagcgtgtgaccAATCCGCCTGATTCACTACAGCACCGGGACacagtttggactcttttcacctgtttatttctttgttaaTAAATCAACCCTCCGGGGATTTTCACTGAGCTCTACTTgtcgtgtgattcttcacccaGTCACACCTTTTTCAGGTATATAAAGGACCCAGAATTTACTCTGCATTTTCAGGACAAAGCTCAAACCATGAAGTCCAAGGAACTTCCCTTTGATCTCAGAAATTGAGGCAAGTTATAGATGGGCATACAATTATTTTCAAGATTTAGAACCCAGTGGTCATTCTGAAAGATATCTAAAAGTCTTTAGCAGAGATGAAAGAACCtgttggacaaaaaaaaacattaggcgTTTATGGCAGAGTGGCCTgacatataaaaagtatataacaACTTGCTTAGAGTTTGCTAAACTGCAACACTACCATCTCAGTTGGAAGTTTGCGGGGGTTCatcatttaaaagattaaaaggaaAAGGAAGCAGAATTTCCCCAGGCATATCAAATGTTTGAGATTATATGCACTTCTGGTTGGATGCTAATTCAGTACTTTTTCCTCTTTCACTAGCCACTTTAAACCGGTTAGTTTACTGCTCAAGCTCATCAAAAAACATGCAGTCTGTTATGGaaagtttttgaaatattaatacattatttgtgGAAAGACAAAGGTTATGTATCATACGGTTTTACTTTAGGAATACACAGCAAAATACAGACACTGcgatgaaatgattaaaaagctCAAACGAAACctaaaatatacaacatacCTACAGactgcaaaacattaaaaacttctGATAAGTTCTGTATACACTGACATCCACAGCACAAGTCAAGTAGTTTACACCTTCAATAATCTAGACAGTAGTTTAAAACAATGCTCATCAGTTACCAAAATCACAAGCACAATCTTTGAAAAAGttgatttaaattataattaaaaaacaaacaaacaca

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252341.1 True 2608 lncRNA 0.41 2 2010196 2012985

Neighbor

gene id symbol gene type direction distance location
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding upstream 145838 1860931 ~ 1864358 (+)
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding upstream 192104 1815818 ~ 1818092 (+)
LOC122356760 pim3,LOC107732271 coding upstream 239970 1768733 ~ 1770226 (+)
prorsd1 LOC107701441,LOC107571560 coding upstream 325017 1683250 ~ 1685179 (+)
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 632243 1357268 ~ 1377953 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 26497 2039482 ~ 2046270 (+)
degs1 degs1,LOC107753721,LOC107699139,LOC107742811,LOC108412154 coding downstream 42004 2054989 ~ 2059566 (+)
wu:fc17b08 LOC107705013,LOC107565911,LOC107699137,LOC107742810,LOC107753730,LOC107753729 coding downstream 63188 2076173 ~ 2094028 (+)
LOC122356476 LOC107582116,LOC107753727,LOC107699114,LOC101886535,LOC107558210,LOC107709369 coding downstream 153635 2166620 ~ 2175433 (+)
LOC122356458 NA coding downstream 173273 2186258 ~ 2195187 (+)
G90031 NA non-coding upstream 223 2008967 ~ 2009973 (+)
G90024 NA non-coding upstream 96478 1912360 ~ 1913718 (+)
G90023 NA non-coding upstream 97894 1911993 ~ 1912302 (+)
G90022 NA non-coding upstream 99954 1910009 ~ 1910242 (+)
G90021 NA non-coding upstream 100203 1909595 ~ 1909993 (+)
G90034 heatr5b non-coding downstream 4198 2017183 ~ 2034567 (+)
G90041 heatr5b non-coding downstream 22352 2035337 ~ 2035837 (+)
G90088 NA non-coding downstream 39050 2052035 ~ 2052305 (+)
G90089 NA non-coding downstream 40612 2053597 ~ 2053846 (+)
G90094 NA non-coding downstream 62567 2075552 ~ 2075828 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other upstream 12886 1989872 ~ 1997310 (+)
G90010 LOC107676803 other upstream 137605 1872184 ~ 1872591 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other upstream 168088 1840335 ~ 1842108 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other upstream 396866 1581358 ~ 1613330 (+)
G89846 NA other upstream 540061 1469405 ~ 1470135 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 140437 2153422 ~ 2166028 (+)
cutc cutc other downstream 163024 2176009 ~ 2180829 (+)
LOC122356772 pim3,LOC107732271 other downstream 251761 2264746 ~ 2284807 (+)
G90230 NA other downstream 456960 2469945 ~ 2470381 (+)
LOC122356072 znf318,LOC107739464,LOC107564219,LOC107728066 other downstream 969574 2982559 ~ 3010641 (+)

Expression


Co-expression Network