LOC122356500


Basic Information

Item Value
gene id LOC122356500
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2265878 ~ 2280146 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252345.1
TAACCACCTGAAGACACCCTGTAATGAGAGATCACCCTCACAATGAGTCTCTTCACTCCTCACTGTCGTTCCCTGTTTGTCGTGGAAAAATGAAGACACTAGTTCTAGTTCCTCCTGCCACATCAGACTCTGCTGTATATATGGAGACCCTTCATGTTGTGTGCTTTTCATTATTGTGCATGCAGGTATAATTCAGGCATACGCTAAGCAGAAGTTTCAGGACCGTTCAAAGGATTATCGTGTGGCCGCAATGTGTCACTGGATCGAGTCTGTATCCGGATCAGATGGTGGAGACAACTCTACAGAGCTGAATGTCAGCAGAGACCATGTCAACTAGATGAGCCCCAAAGACAGATCCCCAGTGAAGACCTCATTAACTATACAGCCATTGACACGAAACCACAGCAAAGACCACAATGACAAACACCATGTTGCTTCATCTGGACaggtttttctccattcttgGCTTGCTTAATTTGGGACAATTAATTTTTGGGTGTATTAACGACTTAATTGCAGAGACACTGAAGGGAAGTGAACTGAGTTGGATTGAATTGTTCACTTTACACTTTTCCTTTAATTTTGCAttagtttcttttatttaataatttcaaggTTTCCTCAATTTAAATCAACTGAttgctttttacagtgcataaaaacatttttaataacgtTCTTTACAACCAAACAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252345.1 True 696 lncRNA 0.40 4 2265878 2280146

Neighbor

gene id symbol gene type direction distance location
slit1a slit1,slit1a,LOC107699140,LOC107753728,LOC107705008,LOC107565895 coding downstream 119282 2093475 ~ 2146596 (-)
nvl nvl,LOC107558213 coding downstream 191100 2060300 ~ 2074778 (-)
heatr5b heatr5b,LOC102314180 coding downstream 228767 2012695 ~ 2037111 (-)
efemp1 efemp1,LOC107753722,LOC107742815,LOC107701580 coding downstream 254484 1997355 ~ 2011394 (-)
vit LOC107680287,LOC107565916,LOC107709440 coding downstream 345253 1899037 ~ 1920625 (-)
LOC122356487 LOC107654083,LOC107715618,LOC107727478 coding upstream 159060 2439206 ~ 2457063 (-)
LOC122356433 LOC107680168,LOC107571251,LOC107567524,LOC107563091,LOC107676802,LOC107653882,LOC107756192,LOC107560357,LOC107717306 coding upstream 178734 2458880 ~ 2466266 (-)
gsta.1 LOC107701971,LOC107734005 coding upstream 198437 2478583 ~ 2480329 (-)
LOC122356775 gtpbp2,LOC107751133,LOC107701968,LOC107699157 coding upstream 208281 2488427 ~ 2497421 (-)
LOC122356217 LOC107719934,LOC107699158,LOC107597732 coding upstream 326934 2607080 ~ 2608868 (-)
G90196 NA non-coding downstream 47444 2217890 ~ 2218434 (-)
G90193 NA non-coding downstream 50577 2214537 ~ 2215301 (-)
G90180 NA non-coding downstream 72915 2190911 ~ 2192963 (-)
G90166 NA non-coding downstream 99578 2150317 ~ 2166300 (-)
G90207 NA non-coding upstream 5396 2285542 ~ 2286209 (-)
G90208 NA non-coding upstream 7237 2287383 ~ 2298224 (-)
G90211 NA non-coding upstream 24068 2304214 ~ 2311129 (-)
G90261 NA non-coding upstream 147315 2427461 ~ 2427901 (-)
LOC122356497 NA non-coding upstream 162101 2442247 ~ 2443484 (-)
G90161 tp53bp2,LOC107582030,LOC107705014,LOC107742808 other downstream 20800 2151837 ~ 2245078 (-)
LOC122356758 ccdc88a,LOC107571560,LOC107701441,LOC107570323,LOC107695193 other downstream 573524 1684449 ~ 1692354 (-)
LOC122356439 LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986,LOC107708380 other downstream 708831 1554230 ~ 1557047 (-)
si:dkey-228d14.5 si:dkey-228d14.5,LOC107747455,LOC107582513,LOC107708394,LOC107589525,LOC107678589,LOC107690177 other downstream 977596 1212870 ~ 1288282 (-)
lrmda c13h10orf11,cunh10orf11,c3h10orf11,cssa18h10orf11,LOC107747465,LOC107678567,LOC107708444,LOC105909757,LOC103041229,LOC107582503 other downstream 1334873 687409 ~ 931005 (-)
G90304 NA other upstream 304050 2584196 ~ 2585331 (-)
G90311 polh other upstream 346182 2626328 ~ 2627157 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other upstream 710272 2990418 ~ 3244896 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other upstream 1001191 3281337 ~ 3298549 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other upstream 1142607 3422753 ~ 3435580 (-)

Expression


Co-expression Network