LOC122356721


Basic Information

Item Value
gene id LOC122356721
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4338842 ~ 4347524 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252372.1
TCCAGATAGAGCCAGCAGCAGGGCCGGGGCGGACAGGTGGTGCGCTgctgctttttgttgttgtgtgcaGTTGATGTAGCTGGCTACGAGCAACGTCACGTCTCGAACCTCAACAACACAAGACAGCAGAGAAATACAgGCAGAACGTTGAACGTGGCTGTGTTGCTGCCTATCGCAGGGTCAGAAATCTTTCGGAGTTCATCCAAAGCATCTTGATTTGGAGACGAACAAAgctcttacgggtttggaacgacatgaggTGTACCTTTGTCAGATGTCCTTTCATGACGGGCCGTGTGTCGGGGTGAGTGAAGAGCGGACTAGCGGCTTTGATCTTCAGGACGCTCTGGAGGACCCTCAGCCACTCCTCCAGCAGGTTTGGAGAGTCTGCTTTCAG
>XR_006252373.1
TGCGTCACAGGACATTAAAACTAAACACACGCTCTGAGGAGAAAGCCATCGCTCCCTCTAGTGGTGCGTGTTCGGATCTGACCTGCAGGGGTCCCGGCGGTCCGTACGGCTGCCTCTTCCTCGTCTGTTTGgGCAGAACGTTGAACGTGGCTGTGTTGCTGCCTATCGCAGGGTCAGAAATCTTTCGGAGTTCATCCAAAGCATCTTGATTTGGAGACGAACAAAgctcttacgggtttggaacgacatgaggTGTACCTTTGTCAGATGTCCTTTCATGACGGGCCGTGTGTCGGGGTGAGTGAAGAGCGGACTAGCGGCTTTGATCTTCAGGACGCTCTGGAGGACCCTCAGCCACTCCTCCAGCAGGTTTGGAGAGTCTGCTTTCAG
>XR_006252374.1
CTGAGGAGAAAGCCATCGCTCCCTCTAGTGGTGCGTGTTCGGATCTGACCTGCAGGGGTCCCGGCGGTCCGTACGGCTGCCTCTTCCTCGTCTGTTTGGTGAGCTGGCAGTAGATCTCGTTCTGCAGCTCCGGgGCAGAACGTTGAACGTGGCTGTGTTGCTGCCTATCGCAGGGTCAGAAATCTTTCGGAGTTCATCCAAAGCATCTTGATTTGGAGACGAACAAAgctcttacgggtttggaacgacatgaggTGTACCTTTGTCAGATGTCCTTTCATGACGGGCCGTGTGTCGGGGTGAGTGAAGAGCGGACTAGCGGCTTTGATCTTCAGGACGCTCTGGAGGACCCTCAGCCACTCCTCCAGCAGGTTTGGAGAGTCTGCTTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252372.1 True 397 lncRNA 0.53 3 4338842 4347524
XR_006252373.1 False 390 lncRNA 0.54 3 4338842 4342720
XR_006252374.1 False 392 lncRNA 0.56 3 4338842 4342687

Neighbor

gene id symbol gene type direction distance location
thada thada,LOC107586496,LOC107590015,LOC107707143,LOC107727367,LOC107590014 coding downstream 13367 4245731 ~ 4325475 (-)
LOC122357001 LOC107699293,LOC107586477,LOC107727368,LOC107678540,LOC107707148 coding downstream 94409 4241527 ~ 4244433 (-)
haao haao,LOC107586504,LOC107699283,LOC107727361,LOC107590002,LOC107678607,LOC107707146 coding downstream 271236 4062472 ~ 4067606 (-)
LOC122356122 kcng3,LOC107758134,LOC107590001,LOC107756869,LOC107586474,LOC108273984 coding downstream 316442 4016033 ~ 4022400 (-)
prph2b LOC107739477,LOC107586467,LOC107578331,LOC107590000,LOC107669578,LOC107728796,LOC107696376 coding downstream 574241 3761833 ~ 3764601 (-)
epcam epcam,LOC107707150,LOC107727388,LOC107699297 coding upstream 3760 4351284 ~ 4353751 (-)
ttc7a ttc7a,LOC107586483,LOC107678602 coding upstream 56999 4404523 ~ 4437492 (-)
prop1 LOC107727379,LOC107699286,LOC107586498 coding upstream 94368 4441892 ~ 4446288 (-)
socs5b socs5b,socs5,LOC107727375,LOC107586485,LOC107708402,LOC107699300 coding upstream 114498 4462022 ~ 4471950 (-)
galm galm,LOC107586487,LOC107699302 coding upstream 259700 4607224 ~ 4611108 (-)
G90633 LOC107590022,LOC107586473,LOC107758132,LOC107666233 non-coding downstream 324841 4010173 ~ 4014001 (-)
G90629 LOC107586470,LOC107698167 non-coding downstream 387245 3945108 ~ 3951597 (-)
G90632 NA non-coding downstream 394578 3943873 ~ 3944264 (-)
G90631 NA non-coding downstream 395137 3943460 ~ 3943705 (-)
G90627 LOC107590012 non-coding downstream 401630 3936965 ~ 3937212 (-)
G90750 NA non-coding upstream 42831 4390355 ~ 4413771 (-)
G90802 epas1,LOC107586486,LOC107727363,LOC107699276,LOC107589559,LOC107708405 non-coding upstream 197497 4545021 ~ 4570758 (-)
G90786 NA non-coding upstream 201587 4549111 ~ 4622804 (-)
G90785 NA non-coding upstream 213252 4560776 ~ 4584961 (-)
G90842 NA non-coding upstream 402908 4750432 ~ 4750968 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 283429 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 382887 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 903262 3422753 ~ 3435580 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other downstream 1040293 3281337 ~ 3298549 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other downstream 1093946 2990418 ~ 3244896 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 325442 4672966 ~ 4689168 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other upstream 343358 4690882 ~ 4779732 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 1572978 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 1714161 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1872651 6220175 ~ 6227272 (-)

Expression


Co-expression Network