LOC122356898


Basic Information

Item Value
gene id LOC122356898
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10784852 ~ 10787504 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252397.1
atatttgcattattcTTCAGTCTGATAAATTTTCAAACAATTTTTCACTAGTTAATACTTAAATTCCGTTGATTATTGTCAATTTGACTGCACaaatactatttaaactgaactgagctggacaatgatgtctctgaattcaataataaaaagcctttaaatgaaaactgagtGTTTAGTCTTGTCATTATACACTACTGTCACATATTCTCCTATTCAAtatgttaagtgctttgacacaatctgtattgttaaaagcgctatataaataaaggaaGACTAATTTTTGCAGTTTTCCATTACtggttatttttataaataccaGTCTTACCTGATTATGATAATTCATGTTGcagctttttgtatttttatttcccaGCCATACTCTCCGCATTCGGCATCATTCTATCATAGAAAAGGTTGCACATTCTCCTTAACGCACAGGTGAATTGGGTGCACCGCTTCAATCAAGGCTTTACTATTGGGTTTGAGAGTCATCTGAGCCCAGACAACAAAAGCAAACGCTACAGTGAGTGTCTCTACTGTAAGTGGCTTTTGAAGAATTGGCACAGTCATCTGGCGAACACCTCACATCTCTCACAAACAAATGAAGGCCTGGCGCTTCAAAGTGAGATTGATATCTCTCTCTGAACTTCAACCAGAATATTCTGAATATTGAGAGAGGTGCACTCCTCCCACGGGACCGCCGAGGCGCCTCTCTCCTCCCTCGTTCCGCcaaagagggggaaaaagatTGCCCCTGATCTTCCATGTTCATCAATATTCACTCATTCATCGTGAGCCATGGCAGCTGAAATTTGGCCTAGTATTGCTGAATGGATGACCCAGGGATCCACTTTGTTGCCATGAGGTTGTCTGCGATTGAGATTTAGGGTTAGAACAGAACAATACACAATTTTTATGAACTTCAGACTCATCTATATATTTTACCTTGTGACAGAAAACTTTTCAATTTGCTCTGCAAGTTCTTAAGATTACCCATGCATTTAATAAGCCTAGAATAGATGTATCTACCTTGTTCTGCTTTCTGACTGTATGCCAAATATTAAATTGCGTTTTCCCTTTCTGTTTTTACttggaaatatttttcaaataaaataaaggaagcTGATAAAGACGGTTGCCATAAATCAACGCGTATTGCTGAATTCTCACAGAGTATTTAAGCTACTATACTGAAGTATTGATATTAAACTgaatttgcaaaatatatataaaatgtctttgcAGTTGCAATGTGCACACATAGAATGTAATATGCATTGTGCACCATGAAAACACAAATGATCTTGAAcaaattctgtcttttttatgcaaattcttaaaaaaaaacatattttttttacatttactgtaaaacatcCACCAGGAAAATACGTTTTGATGCGAACAAATGCATTGCCAATCAGGTTTGCTTCTCTGTTAGTATCTCCACAGCTGTATGTCTCTATTAGAGCATCTTTCCGAGAACTCCTTAGCCAAATGAAGAGGCAAACAtagatggtgatgatgatgatgatgatgatgatgatgatggtggtcaTAATATAGATCACTGAACCAAGCTCAACCAGCTTAAGACCGAACCACAAAATTCACAATCATACGAATCCCACCTCCAGGTAAACCACCGAATTTTAAATTCCAGGTAATGTGAAAATGACTACGCTGTCACTGTGCAGTGCACTAATAAATCACCACAGTTGCATACA

Function

GO:      GO:0017137

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252397.1 True 1733 lncRNA 0.37 2 10784852 10787504

Neighbor

gene id symbol gene type direction distance location
cdhr1a LOC107588642,LOC107707459,LOC107683738,LOC107585311,LOC107673943,LOC107716342 coding downstream 82755 10669026 ~ 10702097 (-)
rgra rgr,rgra,LOC107588645,LOC107585363,LOC105909826,LOC100696641 coding downstream 125943 10651830 ~ 10658909 (-)
slc18a3a slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 coding downstream 139733 10642559 ~ 10645119 (-)
chata chata,LOC107588646,LOC107683741,LOC107707518,LOC107716339,LOC107673961,LOC107585314 coding downstream 142992 10634965 ~ 10641860 (-)
LOC122356628 LOC107707586,LOC107588654,LOC107688299,LOC107716331,LOC107673895,LOC107585321 coding downstream 435628 10345457 ~ 10349224 (-)
hif1an LOC107707391,LOC107585304,LOC107588638,LOC107668772,LOC107673917 coding upstream 99300 10886804 ~ 10893952 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351,LOC107673931,LOC107585301 coding upstream 110864 10898368 ~ 10905914 (-)
scdb LOC107716350,LOC107707381,LOC107673932,LOC107588636,LOC107585302 coding upstream 118551 10906055 ~ 10911829 (-)
trmt2b trmt2b coding upstream 125546 10913050 ~ 10914756 (-)
tysnd1 LOC107673878,LOC107716300,LOC107708039,LOC107578377 coding upstream 163947 10951451 ~ 10955143 (-)
G92788 NA non-coding downstream 157 10784373 ~ 10784695 (-)
G92784 NA non-coding downstream 9353 10775195 ~ 10775499 (-)
G92779 NA non-coding downstream 21960 10762619 ~ 10762892 (-)
G92662 NA non-coding downstream 173419 10610570 ~ 10611433 (-)
G92639 NA non-coding downstream 209618 10574787 ~ 10575234 (-)
LOC122356733 NA non-coding upstream 82 10787586 ~ 10799864 (-)
G92829 NA non-coding upstream 157700 10945204 ~ 10947731 (-)
G92836 LOC107668836 non-coding upstream 189029 10976533 ~ 10977459 (-)
G92839 LOC107668764,LOC107564357,LOC107716286,LOC107673889,LOC106577227,LOC107703098 non-coding upstream 198798 10986302 ~ 10986520 (-)
G92840 LOC107668764,LOC107716286,LOC107564357,LOC107564360,LOC107673889,LOC106577227 non-coding upstream 200910 10988414 ~ 10988695 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 150286 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 593086 10174413 ~ 10191766 (-)
G92267 NA other downstream 1669301 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2736951 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 2968473 7809849 ~ 7816379 (-)
G92819 NA other upstream 137440 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 413048 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 737899 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 856426 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 983924 11771428 ~ 11799032 (-)

Expression


Co-expression Network