LOC122356952


Basic Information

Item Value
gene id LOC122356952
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17632249 ~ 17672523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252401.1
gagaggggaATAAAGGAGGGGTGGCGGAGACATtgtgattttcttcttcttctttcttatttaattgGTCCTCCGGGATCCGGGGCGAGTCCTCCGTTCGCAGCTGCGCAGCTTTAATTGGCTGGAGATTCCACCAAAACACTATTGGAAAAAGCTGAGAGTTTATACAGTTTAGACCCCGGTCCCTTCTGATAAGCCCACTCGTTACCGAGAGCGCCGCTGGACGAGCTTTACGCGGAGGCTCTCCAGAAGCCCTTTCAGATCTCAGACGCGCATCAGCCAGTGAGATCTGCGCGCGCGTCTCCACACCGACGCGCAACCTCTCCGTCCGCCTCACTCTTCGGAGAGCCATCGACGAGCGCGCATCCGGTAGGAGAGCATCACAGGACAAGAGTTTCGGGCAGAGCTCGCGCCGGACCCCCGCTTTTCCACGATTTCGCCCCTGGATGCGTGCACGCGCGCCGCCTTCGAGACTTTCCCGTCAGTTGAAGTTGCTCGCAAGAATGTGTTGGAATTTCGTCTTTATCTTCTGGACGGAGAGACGTCGGTGCGCTCGCGCTGAACACGCAACAAACTAAACGCCCGGGAACTCCAGCGTTCCGCAGAAAAGTCGTTCTTTTCTAAAGGGGATTATTTCGAAGGGCGGCGATCTTACAGGCTCGAACCCCGCGCGGAGAAAAGGTAATGAGGGATCGCACCTGAAGATGGAGCTTTTctggattttattattttctgtattccATCGCTACGTGCAAACGCAAGGAGTTTACGCTCCTGCGAACGCTCAGATTGTGCATTCTGGGCAGACGTGTGTGGTGAAGGAGGACAACATCAGTGAAAGGATCTACACCATCAGAGAAGGGGACACTTTAGTTCTGCAGTGTCTGGTCAAAGGACACCC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252401.1 True 901 lncRNA 0.54 3 17632249 17672523

Neighbor

gene id symbol gene type direction distance location
LOC122356215 marveld1,LOC107564681,LOC107664302,LOC107736855,LOC107665576 coding downstream 83645 17547414 ~ 17548604 (-)
LOC122356833 mdga1,LOC107679144,LOC107676363,LOC107561756 coding downstream 266400 17212933 ~ 17365849 (-)
fhip2a LOC107568115,LOC107679198,LOC107724610,LOC107734297,LOC107676387,LOC107575459 coding downstream 656760 16964295 ~ 16975489 (-)
ablim1a ablim1a,LOC107676391,LOC107724609 coding downstream 669770 16923937 ~ 16962479 (-)
LOC122356703 eif3s6ip,eif3l,LOC107679167,LOC107676390 coding downstream 800009 16827009 ~ 16832240 (-)
zfand3 zfand3,LOC107566515,LOC107679194,LOC107724624,LOC107734288,LOC107676388,LOC107561772 coding upstream 26414 17698937 ~ 17713567 (-)
trnav-cac_10 NA coding upstream 46584 17719107 ~ 17719179 (-)
trnav-aac_26 NA coding upstream 47111 17719634 ~ 17719706 (-)
btbd9 btbd9,LOC107724625,LOC107566514,LOC107679175,LOC107734308,LOC107667966,LOC107561768 coding upstream 49908 17722431 ~ 17730987 (-)
glo1 glo1,LOC107667967,LOC107734292,LOC107679178,LOC108426138,LOC103022823,LOC104919745 coding upstream 61415 17733938 ~ 17736960 (-)
G94516 NA non-coding downstream 602186 17022103 ~ 17030063 (-)
G94511 NA non-coding downstream 616592 16984506 ~ 17015657 (-)
G94455 mrpl14,LOC107676385,LOC107679189,LOC107734281 non-coding downstream 1037518 16593425 ~ 16594731 (-)
G94453 mlh1 non-coding downstream 1062999 16567915 ~ 16569250 (-)
G94425 NA non-coding downstream 1113423 16515857 ~ 16518826 (-)
G94608 NA non-coding upstream 49205 17721728 ~ 17722300 (-)
G94619 NA non-coding upstream 118361 17790884 ~ 17791890 (-)
LOC122356989 NA non-coding upstream 219514 17892037 ~ 17900115 (-)
LOC122356279 NA non-coding upstream 230674 17903197 ~ 17910716 (-)
G94663 NA non-coding upstream 267880 17940403 ~ 17994249 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 245243 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 1205714 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 1339870 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 1463045 16009687 ~ 16169204 (-)
G94216 NA other downstream 1747027 15877527 ~ 15885222 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 873048 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 1285180 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 1613507 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 2190007 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 2236672 19909195 ~ 19921669 (-)

Expression


Co-expression Network